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gnu: methyldackel: Update to 0.5.1.

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* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.5.1.
[arguments]: Link with libbigwig.
[inputs]: Add curl and libbigwig; replace htslib with htslib-1.9.
This commit is contained in:
Ricardo Wurmus 2020-11-15 23:27:31 +01:00
parent f11c9a8919
commit e1fa3ea9fe
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GPG key ID: 197A5888235FACAC
1 changed files with 6 additions and 3 deletions
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gnu/packages/bioinformatics.scm
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@ -15437,7 +15437,7 @@ patterns.")
(define-public methyldackel (define-public methyldackel
(package (package
(name "methyldackel") (name "methyldackel")
(version "0.4.0") (version "0.5.1")
(source (origin (source (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
@ -15446,7 +15446,7 @@ patterns.")
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"10gh8k0ca92kywnrw5pkacq3g6r8s976s12k8jhp8g3g49q9a97g")))) "1sfhf2ap75qxpnmy1ifgmxqs18rq8mah9mcgkby73vc6h0sw99ws"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:test-target "test" `(#:test-target "test"
@ -15459,11 +15459,14 @@ patterns.")
(replace 'configure (replace 'configure
(lambda* (#:key outputs #:allow-other-keys) (lambda* (#:key outputs #:allow-other-keys)
(substitute* "Makefile" (substitute* "Makefile"
(("-lhts ") "-lhts -lBigWig ")
(("install MethylDackel \\$\\(prefix\\)" match) (("install MethylDackel \\$\\(prefix\\)" match)
(string-append "install -d $(prefix); " match))) (string-append "install -d $(prefix); " match)))
#t))))) #t)))))
(inputs (inputs
`(("htslib" ,htslib) `(("curl" ,curl) ; XXX: needed by libbigwig
("htslib" ,htslib-1.9)
("libbigwig" ,libbigwig)
("zlib" ,zlib))) ("zlib" ,zlib)))
;; Needed for tests ;; Needed for tests
(native-inputs (native-inputs