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gnu: python-scikit-image: Update to 0.22.0. 

* gnu/packages/python-science.scm (python-scikit-image): Update to 0.22.0.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-expression; remove custom 'build phase; simplify 'check
phase; enable all tests.
[propagated-inputs]: Add python-lazy-loader.
[native-inputs]: Add meson-python, python-numpydoc, python-packaging, and
python-wheel.

Change-Id: I00ede026a7941eae36157106f753a21fb64099c3
master
Ricardo Wurmus 2024-01-08 08:26:51 +01:00
parent 32edfc4a85
commit e2c76bdd83
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 28 additions and 23 deletions
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@ -263,31 +263,31 @@ logic, also known as grey logic.")
(define-public python-scikit-image (define-public python-scikit-image
(package (package
(name "python-scikit-image") (name "python-scikit-image")
(version "0.19.3") (version "0.22.0")
(source (source
(origin (origin
(method url-fetch) (method git-fetch)
(uri (pypi-uri "scikit-image" version)) (uri (git-reference
(url "https://github.com/scikit-image/scikit-image")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256 (sha256
(base32 "0l645smf7w1kail70z8d9r3xmvz7qh6g7n3d2bpacbbnw5ykdd94")))) (base32 "10fzyq2w1ldvfkmj374l375yrx33xrlw39xc9kmk8fxfi77jpykd"))))
(build-system python-build-system) (build-system pyproject-build-system)
(arguments (arguments
`(#:phases (list
(modify-phases %standard-phases #:phases
(add-before 'build 'change-home-dir #~(modify-phases %standard-phases
(lambda _ (add-before 'build 'change-home-dir
;; Change from /homeless-shelter to /tmp for write permission. (lambda _
(setenv "HOME" "/tmp") ;; Change from /homeless-shelter to /tmp for write permission.
#t)) (setenv "HOME" "/tmp")))
(replace 'build (replace 'check
(lambda _ (lambda* (#:key tests? test-flags #:allow-other-keys)
(invoke "make"))) (when tests?
(replace 'check (with-directory-excursion "/tmp"
(lambda _ (apply invoke "pytest" "-v" "--doctest-modules"
;; The following tests require online data. (append test-flags (list #$output))))))))))
(invoke "python" "-m" "pytest" "skimage" "--doctest-modules" "-k"
(string-append "not test_ndim"
" and not test_skin")))))))
;; See requirements/ for the list of build and run time requirements. ;; See requirements/ for the list of build and run time requirements.
;; NOTE: scikit-image has an optional dependency on python-pooch, however ;; NOTE: scikit-image has an optional dependency on python-pooch, however
;; propagating it would enable many more tests that require online data. ;; propagating it would enable many more tests that require online data.
@ -295,6 +295,7 @@ logic, also known as grey logic.")
(list python-cloudpickle (list python-cloudpickle
python-dask python-dask
python-imageio python-imageio
python-lazy-loader
python-matplotlib python-matplotlib
python-networkx python-networkx
python-numpy python-numpy
@ -304,9 +305,13 @@ logic, also known as grey logic.")
python-scipy python-scipy
python-tifffile)) python-tifffile))
(native-inputs (native-inputs
(list python-cython (list meson-python
python-cython
python-numpydoc
python-packaging
python-pytest python-pytest
python-pytest-localserver)) python-pytest-localserver
python-wheel))
(home-page "https://scikit-image.org/") (home-page "https://scikit-image.org/")
(synopsis "Image processing in Python") (synopsis "Image processing in Python")
(description (description