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gnu: r-harmony: Update to 1.2.0.

* gnu/packages/cran.scm (r-harmony): Update to 1.2.0.
[source]: Remove snippet.
[home-page]: Update to canonical CRAN URL.
[propagated-inputs]: Remove r-irlba and r-tidyr; add r-rhpcblasctl.
[native-inputs]: Remove autoconf; add r-knitr.

Change-Id: I3c554bbb29ccc2b8a24d2d46e362b7d7cae56c1c
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
master
nafkhamdc 2024-02-15 15:40:19 +00:00 committed by Ricardo Wurmus
parent 95f3db6910
commit e3586aa61d
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 19 additions and 31 deletions

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@ -26954,44 +26954,32 @@ dataset-specific factors.")
(define-public r-harmony
(package
(name "r-harmony")
(version "0.1")
(version "1.2.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/immunogenomics/harmony")
(commit version)))
(file-name (git-file-name name version))
(method url-fetch)
(uri (cran-uri "harmony" version))
(sha256
(base32
"05r401q09rbr6fqhb9mbd95082cjdi3nag1cv6zn96xkr0f6imq9"))
(modules '((guix build utils)))
(snippet
'(begin
(for-each delete-file '("config.status" "configure"))
#t))))
(base32 "1df7bb9ba3m0c44fhmh8cs4hlkh4fffjwm8rz7l87lf5pdy7sg56"))))
(properties `((upstream-name . "harmony")))
(build-system r-build-system)
(propagated-inputs
(list r-cowplot
r-dplyr
r-ggplot2
r-irlba
r-matrix
r-rcpp
r-rcpparmadillo
r-rcppprogress
r-rlang
r-tibble
r-tidyr))
(native-inputs
(list autoconf))
(home-page "https://github.com/immunogenomics/harmony")
(propagated-inputs (list r-cowplot
r-dplyr
r-ggplot2
r-matrix
r-rcpp
r-rcpparmadillo
r-rcppprogress
r-rhpcblasctl
r-rlang
r-tibble))
(native-inputs (list r-knitr))
(home-page "https://cran.r-project.org/web/packages/harmony/index.html")
(synopsis "Integration of single cell sequencing data")
(description
"This package provides an implementation of the Harmony algorithm for
single cell integration, described in Korsunsky et al
@url{doi.org/10.1101/461954}. The package includes a standalone Harmony
function and interfaces to external frameworks.")
single cell integration. This package includes a standalone Harmony function
and interfaces to external frameworks.")
(license license:gpl3)))
(define-public r-covr