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gnu: r-genelendatabase: Move from "annotation" to "experiment" section. 

* gnu/packages/bioconductor.scm (r-genelendatabase): Move variable.
master
Ricardo Wurmus 2020-12-17 11:38:24 +01:00
parent 30a4bd3bb3
commit e5610fd9f4
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1 changed files with 24 additions and 24 deletions
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48
gnu/packages/bioconductor.scm
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@ -569,30 +569,6 @@ as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.")
"This package exposes an annotation database generated from Ensembl.") "This package exposes an annotation database generated from Ensembl.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-genelendatabase
(package
(name "r-genelendatabase")
(version "1.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "geneLenDataBase" version 'experiment))
(sha256
(base32
"03gm4pvsfascx7kjg0jycpf4f572mja68wwmwigs390vbmawyb4a"))))
(properties
`((upstream-name . "geneLenDataBase")))
(build-system r-build-system)
(propagated-inputs
`(("r-rtracklayer" ,r-rtracklayer)
("r-genomicfeatures" ,r-genomicfeatures)))
(home-page "https://bioconductor.org/packages/geneLenDataBase/")
(synopsis "Lengths of mRNA transcripts for a number of genomes")
(description
"This package provides the lengths of mRNA transcripts for a number of
genomes and gene ID formats, largely based on the UCSC table browser.")
(license license:lgpl2.0+)))
(define-public r-txdb-hsapiens-ucsc-hg19-knowngene (define-public r-txdb-hsapiens-ucsc-hg19-knowngene
(package (package
(name "r-txdb-hsapiens-ucsc-hg19-knowngene") (name "r-txdb-hsapiens-ucsc-hg19-knowngene")
@ -1025,6 +1001,30 @@ All datasets are restricted to protein coding genes.")
from Illumina 450k methylation arrays.") from Illumina 450k methylation arrays.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-genelendatabase
(package
(name "r-genelendatabase")
(version "1.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "geneLenDataBase" version 'experiment))
(sha256
(base32
"03gm4pvsfascx7kjg0jycpf4f572mja68wwmwigs390vbmawyb4a"))))
(properties
`((upstream-name . "geneLenDataBase")))
(build-system r-build-system)
(propagated-inputs
`(("r-rtracklayer" ,r-rtracklayer)
("r-genomicfeatures" ,r-genomicfeatures)))
(home-page "https://bioconductor.org/packages/geneLenDataBase/")
(synopsis "Lengths of mRNA transcripts for a number of genomes")
(description
"This package provides the lengths of mRNA transcripts for a number of
genomes and gene ID formats, largely based on the UCSC table browser.")
(license license:lgpl2.0+)))
(define-public r-hsmmsinglecell (define-public r-hsmmsinglecell
(package (package
(name "r-hsmmsinglecell") (name "r-hsmmsinglecell")