gnu: r-xvector: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-xvector): Move from here... * gnu/packages/bioconductor.scm (r-xvector): ...to here.
This commit is contained in:
parent
821e643921
commit
e56b3db82e
2 changed files with 36 additions and 36 deletions
|
@ -2108,6 +2108,42 @@ annotation infrastructure.")
|
||||||
coding changes and predict coding outcomes.")
|
coding changes and predict coding outcomes.")
|
||||||
(license license:artistic2.0)))
|
(license license:artistic2.0)))
|
||||||
|
|
||||||
|
(define-public r-xvector
|
||||||
|
(package
|
||||||
|
(name "r-xvector")
|
||||||
|
(version "0.30.0")
|
||||||
|
(source (origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "XVector" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"1pqljikg4f6jb7wgm5537zwgq5b013nyz1agjrwfq2cljb0ym6lq"))))
|
||||||
|
(properties
|
||||||
|
`((upstream-name . "XVector")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(arguments
|
||||||
|
`(#:phases
|
||||||
|
(modify-phases %standard-phases
|
||||||
|
(add-after 'unpack 'use-system-zlib
|
||||||
|
(lambda _
|
||||||
|
(substitute* "DESCRIPTION"
|
||||||
|
(("zlibbioc, ") ""))
|
||||||
|
(substitute* "NAMESPACE"
|
||||||
|
(("import\\(zlibbioc\\)") ""))
|
||||||
|
#t)))))
|
||||||
|
(inputs
|
||||||
|
`(("zlib" ,zlib)))
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-biocgenerics" ,r-biocgenerics)
|
||||||
|
("r-iranges" ,r-iranges)
|
||||||
|
("r-s4vectors" ,r-s4vectors)))
|
||||||
|
(home-page "https://bioconductor.org/packages/XVector")
|
||||||
|
(synopsis "Representation and manpulation of external sequences")
|
||||||
|
(description
|
||||||
|
"This package provides memory efficient S4 classes for storing sequences
|
||||||
|
\"externally\" (behind an R external pointer, or on disk).")
|
||||||
|
(license license:artistic2.0)))
|
||||||
|
|
||||||
(define-public r-geneplotter
|
(define-public r-geneplotter
|
||||||
(package
|
(package
|
||||||
(name "r-geneplotter")
|
(name "r-geneplotter")
|
||||||
|
|
|
@ -7691,42 +7691,6 @@ including VCF header and contents in RDF and JSON.")
|
||||||
(home-page "https://github.com/vcflib/bio-vcf")
|
(home-page "https://github.com/vcflib/bio-vcf")
|
||||||
(license license:expat)))
|
(license license:expat)))
|
||||||
|
|
||||||
(define-public r-xvector
|
|
||||||
(package
|
|
||||||
(name "r-xvector")
|
|
||||||
(version "0.30.0")
|
|
||||||
(source (origin
|
|
||||||
(method url-fetch)
|
|
||||||
(uri (bioconductor-uri "XVector" version))
|
|
||||||
(sha256
|
|
||||||
(base32
|
|
||||||
"1pqljikg4f6jb7wgm5537zwgq5b013nyz1agjrwfq2cljb0ym6lq"))))
|
|
||||||
(properties
|
|
||||||
`((upstream-name . "XVector")))
|
|
||||||
(build-system r-build-system)
|
|
||||||
(arguments
|
|
||||||
`(#:phases
|
|
||||||
(modify-phases %standard-phases
|
|
||||||
(add-after 'unpack 'use-system-zlib
|
|
||||||
(lambda _
|
|
||||||
(substitute* "DESCRIPTION"
|
|
||||||
(("zlibbioc, ") ""))
|
|
||||||
(substitute* "NAMESPACE"
|
|
||||||
(("import\\(zlibbioc\\)") ""))
|
|
||||||
#t)))))
|
|
||||||
(inputs
|
|
||||||
`(("zlib" ,zlib)))
|
|
||||||
(propagated-inputs
|
|
||||||
`(("r-biocgenerics" ,r-biocgenerics)
|
|
||||||
("r-iranges" ,r-iranges)
|
|
||||||
("r-s4vectors" ,r-s4vectors)))
|
|
||||||
(home-page "https://bioconductor.org/packages/XVector")
|
|
||||||
(synopsis "Representation and manpulation of external sequences")
|
|
||||||
(description
|
|
||||||
"This package provides memory efficient S4 classes for storing sequences
|
|
||||||
\"externally\" (behind an R external pointer, or on disk).")
|
|
||||||
(license license:artistic2.0)))
|
|
||||||
|
|
||||||
(define-public r-genomicranges
|
(define-public r-genomicranges
|
||||||
(package
|
(package
|
||||||
(name "r-genomicranges")
|
(name "r-genomicranges")
|
||||||
|
|
Reference in a new issue