gnu: r-xvector: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-xvector): Move from here... * gnu/packages/bioconductor.scm (r-xvector): ...to here.master
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@ -2108,6 +2108,42 @@ annotation infrastructure.")
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coding changes and predict coding outcomes.")
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(license license:artistic2.0)))
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(define-public r-xvector
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(package
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(name "r-xvector")
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(version "0.30.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "XVector" version))
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(sha256
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(base32
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"1pqljikg4f6jb7wgm5537zwgq5b013nyz1agjrwfq2cljb0ym6lq"))))
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(properties
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`((upstream-name . "XVector")))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'use-system-zlib
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(lambda _
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(substitute* "DESCRIPTION"
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(("zlibbioc, ") ""))
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(substitute* "NAMESPACE"
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(("import\\(zlibbioc\\)") ""))
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#t)))))
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(inputs
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`(("zlib" ,zlib)))
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-iranges" ,r-iranges)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://bioconductor.org/packages/XVector")
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(synopsis "Representation and manpulation of external sequences")
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(description
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"This package provides memory efficient S4 classes for storing sequences
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\"externally\" (behind an R external pointer, or on disk).")
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(license license:artistic2.0)))
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(define-public r-geneplotter
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(package
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(name "r-geneplotter")
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@ -7691,42 +7691,6 @@ including VCF header and contents in RDF and JSON.")
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(home-page "https://github.com/vcflib/bio-vcf")
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(license license:expat)))
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(define-public r-xvector
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(package
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(name "r-xvector")
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(version "0.30.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "XVector" version))
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(sha256
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(base32
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"1pqljikg4f6jb7wgm5537zwgq5b013nyz1agjrwfq2cljb0ym6lq"))))
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(properties
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`((upstream-name . "XVector")))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'use-system-zlib
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(lambda _
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(substitute* "DESCRIPTION"
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(("zlibbioc, ") ""))
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(substitute* "NAMESPACE"
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(("import\\(zlibbioc\\)") ""))
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#t)))))
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(inputs
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`(("zlib" ,zlib)))
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-iranges" ,r-iranges)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://bioconductor.org/packages/XVector")
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(synopsis "Representation and manpulation of external sequences")
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(description
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"This package provides memory efficient S4 classes for storing sequences
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\"externally\" (behind an R external pointer, or on disk).")
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(license license:artistic2.0)))
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(define-public r-genomicranges
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(package
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(name "r-genomicranges")
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