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gnu: r-xvector: Move to (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-xvector): Move from here...
* gnu/packages/bioconductor.scm (r-xvector): ...to here.
master
zimoun 2021-03-15 19:08:56 +01:00 committed by Ricardo Wurmus
parent 821e643921
commit e56b3db82e
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GPG Key ID: 197A5888235FACAC
2 changed files with 36 additions and 36 deletions

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@ -2108,6 +2108,42 @@ annotation infrastructure.")
coding changes and predict coding outcomes.")
(license license:artistic2.0)))
(define-public r-xvector
(package
(name "r-xvector")
(version "0.30.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "XVector" version))
(sha256
(base32
"1pqljikg4f6jb7wgm5537zwgq5b013nyz1agjrwfq2cljb0ym6lq"))))
(properties
`((upstream-name . "XVector")))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'use-system-zlib
(lambda _
(substitute* "DESCRIPTION"
(("zlibbioc, ") ""))
(substitute* "NAMESPACE"
(("import\\(zlibbioc\\)") ""))
#t)))))
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-iranges" ,r-iranges)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://bioconductor.org/packages/XVector")
(synopsis "Representation and manpulation of external sequences")
(description
"This package provides memory efficient S4 classes for storing sequences
\"externally\" (behind an R external pointer, or on disk).")
(license license:artistic2.0)))
(define-public r-geneplotter
(package
(name "r-geneplotter")

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@ -7691,42 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-xvector
(package
(name "r-xvector")
(version "0.30.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "XVector" version))
(sha256
(base32
"1pqljikg4f6jb7wgm5537zwgq5b013nyz1agjrwfq2cljb0ym6lq"))))
(properties
`((upstream-name . "XVector")))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'use-system-zlib
(lambda _
(substitute* "DESCRIPTION"
(("zlibbioc, ") ""))
(substitute* "NAMESPACE"
(("import\\(zlibbioc\\)") ""))
#t)))))
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-iranges" ,r-iranges)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://bioconductor.org/packages/XVector")
(synopsis "Representation and manpulation of external sequences")
(description
"This package provides memory efficient S4 classes for storing sequences
\"externally\" (behind an R external pointer, or on disk).")
(license license:artistic2.0)))
(define-public r-genomicranges
(package
(name "r-genomicranges")