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gnu: r-motifbreakr: Update to 2.2.0.

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* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.2.0.
[propagated-inputs]: Add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
This commit is contained in:
Ricardo Wurmus 2020-06-13 00:51:07 +02:00
parent da6a75fe00
commit e65783e032
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1 changed files with 17 additions and 14 deletions
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gnu/packages/bioconductor.scm
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@ -4236,32 +4236,35 @@ frequency matrices from nine public sources, for multiple organisms.")
(define-public r-motifbreakr (define-public r-motifbreakr
(package (package
(name "r-motifbreakr") (name "r-motifbreakr")
(version "2.0.0") (version "2.2.0")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "motifbreakR" version)) (uri (bioconductor-uri "motifbreakR" version))
(sha256 (sha256
(base32 "190z8gj393qdpq5wz7gph96k0l8c1j9wd0p0llscysvk5kr1hf9n")))) (base32 "09czgmyjcycsvyvadpjddwwvqvxzd0ba3zhczh4mqc09gwa6vhlm"))))
(properties `((upstream-name . "motifbreakR"))) (properties `((upstream-name . "motifbreakR")))
(build-system r-build-system) (build-system r-build-system)
(propagated-inputs (propagated-inputs
`(("r-grimport" ,r-grimport) `(("r-biocgenerics" ,r-biocgenerics)
("r-stringr" ,r-stringr) ("r-biocparallel" ,r-biocparallel)
("r-biocgenerics" ,r-biocgenerics)
("r-s4vectors" ,r-s4vectors)
("r-iranges" ,r-iranges)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-biostrings" ,r-biostrings) ("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome) ("r-bsgenome" ,r-bsgenome)
("r-rtracklayer" ,r-rtracklayer) ("r-genomeinfodb" ,r-genomeinfodb)
("r-variantannotation" ,r-variantannotation) ("r-genomicranges" ,r-genomicranges)
("r-biocparallel" ,r-biocparallel) ("r-grimport" ,r-grimport)
("r-motifstack" ,r-motifstack)
("r-gviz" ,r-gviz) ("r-gviz" ,r-gviz)
("r-iranges" ,r-iranges)
("r-matrixstats" ,r-matrixstats) ("r-matrixstats" ,r-matrixstats)
("r-motifdb" ,r-motifdb)
("r-motifstack" ,r-motifstack)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-tfmpvalue" ,r-tfmpvalue) ("r-tfmpvalue" ,r-tfmpvalue)
("r-motifdb" ,r-motifdb))) ("r-variantannotation" ,r-variantannotation)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://www.bioconductor.org/packages/motifbreakR/") (home-page "https://www.bioconductor.org/packages/motifbreakR/")
(synopsis "Predicting disruptiveness of single nucleotide polymorphisms") (synopsis "Predicting disruptiveness of single nucleotide polymorphisms")
(description "This package allows biologists to judge in the first place (description "This package allows biologists to judge in the first place