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gnu: r-cellid: Move out of experiments section.

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* gnu/packages/bioconductor.scm (r-cellid): Move from experiments section to
packages section.
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Ricardo Wurmus 2023-07-19 15:05:09 +02:00
parent efec1a8453
commit e74e9f6240
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1 changed files with 45 additions and 45 deletions
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gnu/packages/bioconductor.scm
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@ -1436,51 +1436,6 @@ curated cell type labels, for use in procedures like automated annotation of
single-cell data or deconvolution of bulk RNA-seq.")
(license license:gpl3)))
(define-public r-cellid
(package
(name "r-cellid")
(version "1.8.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "CelliD" version))
(sha256
(base32
"0vigvqjrlqbi5kviaj8qvyq3v8afgbc5pjrz7zmx2ckf4hdp0g03"))))
(properties `((upstream-name . "CelliD")))
(build-system r-build-system)
(propagated-inputs
(list r-data-table
r-biocparallel
r-fastmatch
r-fgsea
r-ggplot2
r-glue
r-irlba
r-matrix
r-matrixstats
r-pbapply
r-rcpp
r-rcpparmadillo
r-reticulate
r-rtsne
r-seurat
r-stringr
r-tictoc
r-singlecellexperiment
r-summarizedexperiment
r-umap))
(native-inputs (list r-knitr r-scater))
(home-page "https://bioconductor.org/packages/CelliD")
(synopsis
"Single cell gene signature extraction using multiple correspondence analysis")
(description
"CelliD is a clustering-free method for extracting per-cell gene
signatures from scRNA-seq. CelliD allows unbiased cell identity recognition
across different donors, tissues-of-origin, model organisms and single-cell
omics protocols. The package can also be used to explore functional pathways
enrichment in single cell data.")
(license license:gpl3)))
(define-public r-champdata
(package
(name "r-champdata")
@ -4220,6 +4175,51 @@ scRNA-seq data. A flexible beta-binomial error model that accounts for
stochastic dropout events as well as systematic allelic imbalance is used.")
(license license:gpl3)))
(define-public r-cellid
(package
(name "r-cellid")
(version "1.8.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "CelliD" version))
(sha256
(base32
"0vigvqjrlqbi5kviaj8qvyq3v8afgbc5pjrz7zmx2ckf4hdp0g03"))))
(properties `((upstream-name . "CelliD")))
(build-system r-build-system)
(propagated-inputs
(list r-data-table
r-biocparallel
r-fastmatch
r-fgsea
r-ggplot2
r-glue
r-irlba
r-matrix
r-matrixstats
r-pbapply
r-rcpp
r-rcpparmadillo
r-reticulate
r-rtsne
r-seurat
r-stringr
r-tictoc
r-singlecellexperiment
r-summarizedexperiment
r-umap))
(native-inputs (list r-knitr r-scater))
(home-page "https://bioconductor.org/packages/CelliD")
(synopsis
"Single cell gene signature extraction using multiple correspondence analysis")
(description
"CelliD is a clustering-free method for extracting per-cell gene
signatures from scRNA-seq. CelliD allows unbiased cell identity recognition
across different donors, tissues-of-origin, model organisms and single-cell
omics protocols. The package can also be used to explore functional pathways
enrichment in single cell data.")
(license license:gpl3)))
(define-public r-coverageview
(package
(name "r-coverageview")