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gnu: Add r-adacgh2.

* gnu/packages/bioconductor.scm (r-adacgh2): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
Mădălin Ionel Patrașcu 2023-02-02 03:26:57 +01:00 committed by Ricardo Wurmus
parent d451470b5d
commit e7b4b691da
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@ -1826,6 +1826,48 @@ expression level and gene-specific dispersion, that might facilitate the gene
ranking by fold-change and visualization.")
(license license:gpl3+)))
(define-public r-adacgh2
(package
(name "r-adacgh2")
(version "2.38.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ADaCGH2" version))
(sha256
(base32 "0g9x3lnr56035wq9ijdcri4sz5pwj8184yxm415gmsxrii9xvpfd"))))
(properties `((upstream-name . "ADaCGH2")))
(build-system r-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'python3-compatibility
(lambda _
(substitute* "inst/imagemap-example/toMap.py"
(("print nameMap") "print(nameMap)")))))))
(inputs (list python-wrapper))
(propagated-inputs
(list r-acgh
r-bit
r-cluster
r-dnacopy
r-ff
r-glad
r-snapcgh
r-tilingarray
r-waveslim))
(home-page "https://github.com/rdiaz02/adacgh2")
(synopsis "Big data analysis from aCGH experiments")
(description
"This package analyzes and creates plots of array @acronym{CGH,
comparative genomic hybridization} data. Also, it allows usage of
@acronym{CBS, Circular Binary Segementation}, wavelet-based smoothing, HMM,
BioHMM, GLAD, CGHseg. Most computations are parallelized (either via forking
or with clusters, including MPI and sockets clusters) and use @code{ff} for
storing data.")
(license license:gpl3+)))
(define-public r-adam
(package
(name "r-adam")