gnu: Add r-adacgh2.
* gnu/packages/bioconductor.scm (r-adacgh2): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
parent
d451470b5d
commit
e7b4b691da
1 changed files with 42 additions and 0 deletions
|
@ -1826,6 +1826,48 @@ expression level and gene-specific dispersion, that might facilitate the gene
|
|||
ranking by fold-change and visualization.")
|
||||
(license license:gpl3+)))
|
||||
|
||||
(define-public r-adacgh2
|
||||
(package
|
||||
(name "r-adacgh2")
|
||||
(version "2.38.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "ADaCGH2" version))
|
||||
(sha256
|
||||
(base32 "0g9x3lnr56035wq9ijdcri4sz5pwj8184yxm415gmsxrii9xvpfd"))))
|
||||
(properties `((upstream-name . "ADaCGH2")))
|
||||
(build-system r-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:phases
|
||||
'(modify-phases %standard-phases
|
||||
(add-after 'unpack 'python3-compatibility
|
||||
(lambda _
|
||||
(substitute* "inst/imagemap-example/toMap.py"
|
||||
(("print nameMap") "print(nameMap)")))))))
|
||||
(inputs (list python-wrapper))
|
||||
(propagated-inputs
|
||||
(list r-acgh
|
||||
r-bit
|
||||
r-cluster
|
||||
r-dnacopy
|
||||
r-ff
|
||||
r-glad
|
||||
r-snapcgh
|
||||
r-tilingarray
|
||||
r-waveslim))
|
||||
(home-page "https://github.com/rdiaz02/adacgh2")
|
||||
(synopsis "Big data analysis from aCGH experiments")
|
||||
(description
|
||||
"This package analyzes and creates plots of array @acronym{CGH,
|
||||
comparative genomic hybridization} data. Also, it allows usage of
|
||||
@acronym{CBS, Circular Binary Segementation}, wavelet-based smoothing, HMM,
|
||||
BioHMM, GLAD, CGHseg. Most computations are parallelized (either via forking
|
||||
or with clusters, including MPI and sockets clusters) and use @code{ff} for
|
||||
storing data.")
|
||||
(license license:gpl3+)))
|
||||
|
||||
(define-public r-adam
|
||||
(package
|
||||
(name "r-adam")
|
||||
|
|
Reference in a new issue