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gnu: Add r-piano.

* gnu/packages/bioconductor.scm (r-piano): New variable.

Change-Id: I1bc2387563510c47614748423a3b510adc0486aa
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Mădălin Ionel Patrașcu 2023-10-31 11:57:27 +01:00 committed by Ricardo Wurmus
parent a8680f59e3
commit e8cd556a7c
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@ -9109,6 +9109,43 @@ isotypes. This R package enables the identification and classification of such
domain isotypes from pfam data.")
(license license:expat)))
(define-public r-piano
(package
(name "r-piano")
(version "2.16.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "piano" version))
(sha256
(base32 "0rm9afgq4n7yinmx09b0xd17wgzhbswm80vcjmmwxr6fv1741xfy"))))
(properties `((upstream-name . "piano")))
(build-system r-build-system)
(propagated-inputs
(list r-biobase
r-biocgenerics
r-dt
r-fgsea
r-gplots
r-htmlwidgets
r-igraph
r-marray
r-relations
r-scales
r-shiny
r-shinydashboard
r-shinyjs
r-visnetwork))
(native-inputs (list r-knitr))
(home-page "https://varemo.github.io/piano/")
(synopsis "Platform for integrative analysis of omics data")
(description
"Piano performs gene set analysis using various statistical methods, from
different gene level statistics and a wide range of gene-set collections. The
package contains functions for combining the results of multiple runs of gene
set analyses.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on a Bioconductor package:
;; r-aroma-light, r-dnacopy..
(define-public r-pscbs