gnu: Add r-xcms.
* gnu/packages/bioconductor.scm (r-xcms): New variable.
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		|  | @ -4004,3 +4004,39 @@ genes.") | ||||||
| data mainly through the use of wavelet transforms.  It supports peak detection | data mainly through the use of wavelet transforms.  It supports peak detection | ||||||
| based on @dfn{Continuous Wavelet Transform} (CWT).") | based on @dfn{Continuous Wavelet Transform} (CWT).") | ||||||
|     (license license:lgpl2.0+))) |     (license license:lgpl2.0+))) | ||||||
|  | 
 | ||||||
|  | (define-public r-xcms | ||||||
|  |   (package | ||||||
|  |     (name "r-xcms") | ||||||
|  |     (version "3.4.4") | ||||||
|  |     (source | ||||||
|  |      (origin | ||||||
|  |        (method url-fetch) | ||||||
|  |        (uri (bioconductor-uri "xcms" version)) | ||||||
|  |        (sha256 | ||||||
|  |         (base32 | ||||||
|  |          "073f25m7y8z4560k93d99fv72pr7nrgrp054zssi7jhas4l3ddww")))) | ||||||
|  |     (build-system r-build-system) | ||||||
|  |     (propagated-inputs | ||||||
|  |      `(("r-biobase" ,r-biobase) | ||||||
|  |        ("r-biocgenerics" ,r-biocgenerics) | ||||||
|  |        ("r-biocparallel" ,r-biocparallel) | ||||||
|  |        ("r-lattice" ,r-lattice) | ||||||
|  |        ("r-massspecwavelet" ,r-massspecwavelet) | ||||||
|  |        ("r-msnbase" ,r-msnbase) | ||||||
|  |        ("r-multtest" ,r-multtest) | ||||||
|  |        ("r-mzr" ,r-mzr) | ||||||
|  |        ("r-plyr" ,r-plyr) | ||||||
|  |        ("r-protgenerics" ,r-protgenerics) | ||||||
|  |        ("r-rann" ,r-rann) | ||||||
|  |        ("r-rcolorbrewer" ,r-rcolorbrewer) | ||||||
|  |        ("r-robustbase" ,r-robustbase) | ||||||
|  |        ("r-s4vectors" ,r-s4vectors))) | ||||||
|  |     (home-page "https://bioconductor.org/packages/xcms/") | ||||||
|  |     (synopsis "LC/MS and GC/MS mass spectrometry data analysis") | ||||||
|  |     (description | ||||||
|  |      "This package provides a framework for processing and visualization of | ||||||
|  | chromatographically separated and single-spectra mass spectral data.  It | ||||||
|  | imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files.  It preprocesses | ||||||
|  | data for high-throughput, untargeted analyte profiling.") | ||||||
|  |     (license license:gpl2+))) | ||||||
|  |  | ||||||
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