gnu: Add miniasm.
* gnu/packages/bioinformatics.scm (miniasm): New variable.
This commit is contained in:
		
							parent
							
								
									e174231863
								
							
						
					
					
						commit
						eca648b65b
					
				
					 1 changed files with 36 additions and 0 deletions
				
			
		|  | @ -13312,6 +13312,42 @@ cases include: | |||
| @end enumerate\n") | ||||
|     (license license:expat))) | ||||
| 
 | ||||
| (define-public miniasm | ||||
|   (package | ||||
|    (name "miniasm") | ||||
|    (version "0.3") | ||||
|    (source (origin | ||||
|             (method url-fetch) | ||||
|             (uri (string-append | ||||
|                   "https://github.com/lh3/miniasm/archive/v" | ||||
|                   version ".tar.gz")) | ||||
|             (file-name (string-append name "-" version ".tar.gz")) | ||||
|             (sha256 | ||||
|                (base32 | ||||
|                 "0g89pa98dvh34idv7w1zv12bsbyr3a11c4qb1cdcz68gyda88s4v")))) | ||||
|    (build-system gnu-build-system) | ||||
|    (inputs | ||||
|     `(("zlib" ,zlib))) | ||||
|    (arguments | ||||
|     `(#:tests? #f ; There are no tests. | ||||
|       #:phases | ||||
|       (modify-phases %standard-phases | ||||
|         (delete 'configure) | ||||
|         (replace 'install | ||||
|           (lambda* (#:key inputs outputs #:allow-other-keys) | ||||
|             (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) | ||||
|               (install-file "miniasm" bin) | ||||
|               (install-file "minidot" bin))))))) | ||||
|    (home-page "https://github.com/lh3/miniasm") | ||||
|    (synopsis "Ultrafast de novo assembly for long noisy reads") | ||||
|    (description "Miniasm is a very fast OLC-based de novo assembler for noisy | ||||
| long reads.  It takes all-vs-all read self-mappings (typically by minimap) as | ||||
| input and outputs an assembly graph in the GFA format.  Different from | ||||
| mainstream assemblers, miniasm does not have a consensus step.  It simply | ||||
| concatenates pieces of read sequences to generate the final unitig sequences. | ||||
| Thus the per-base error rate is similar to the raw input reads.") | ||||
|    (license license:expat))) | ||||
| 
 | ||||
| (define-public r-circus | ||||
|   (package | ||||
|     (name "r-circus") | ||||
|  |  | |||
		Reference in a new issue