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gnu: Add python-genomic-regions. 

* gnu/packages/bioinformatics.scm (python-genomic-regions): New variable.

Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
master
Ricardo Wurmus 2022-12-02 17:20:54 +01:00
parent 9ddc4e5b03
commit ee069ec651
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@ -57,6 +57,7 @@
#:use-module (guix build-system meson) #:use-module (guix build-system meson)
#:use-module (guix build-system ocaml) #:use-module (guix build-system ocaml)
#:use-module (guix build-system perl) #:use-module (guix build-system perl)
#:use-module (guix build-system pyproject)
#:use-module (guix build-system python) #:use-module (guix build-system python)
#:use-module (guix build-system qt) #:use-module (guix build-system qt)
#:use-module (guix build-system r) #:use-module (guix build-system r)
@ -10601,6 +10602,37 @@ traditional read alignments) and massively-parallel stochastic collapsed
variational inference.") variational inference.")
(license license:gpl3+))) (license license:gpl3+)))
(define-public python-genomic-regions
(package
(name "python-genomic-regions")
(version "0.0.10")
(source (origin
(method url-fetch)
(uri (pypi-uri "genomic_regions" version))
(sha256
(base32
"0hz811iyd1prml1r90qyzimmwyjwycwkjqw4vnl12bxy61rfzjz5"))))
(build-system pyproject-build-system)
(propagated-inputs
(list python-future
python-intervaltree
python-numpy
python-pandas
python-pybedtools
python-pybigwig
python-pytest
python-msgpack-numpy
python-cython
python-msgpack
python-pysam))
(home-page "https://pypi.org/project/genomic-regions/")
(synopsis "Consistently handle genomic regions")
(description "This package aims to simplify working with genomic region /
interval data by providing a common interface that lets you access a wide
selection of file types and formats for handling genomic region data---all
using the same syntax.")
(license license:expat)))
(define-public python-loompy (define-public python-loompy
(package (package
(name "python-loompy") (name "python-loompy")