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gnu: python-scanpy: Update to 1.4.6.

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* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
This commit is contained in:
Efraim Flashner 2020-04-26 13:22:35 +03:00
parent 2b829898c7
commit ee8de73814
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1 changed files with 5 additions and 3 deletions
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@ -13365,14 +13365,14 @@ in RNA-seq data.")
(define-public python-scanpy (define-public python-scanpy
(package (package
(name "python-scanpy") (name "python-scanpy")
(version "1.4.5.1") (version "1.4.6")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "scanpy" version)) (uri (pypi-uri "scanpy" version))
(sha256 (sha256
(base32 (base32
"14kh1ji70xxhmri5q8sgcibsidhr6f221wxrcw8a5xvibj5da17j")))) "0s2b6cvaigx4wzw3850qb93sjwwxbzh22kpbp498zklc5rjpbz4l"))))
(build-system python-build-system) (build-system python-build-system)
(arguments (arguments
`(#:phases `(#:phases
@ -13382,6 +13382,7 @@ in RNA-seq data.")
;; These tests require Internet access. ;; These tests require Internet access.
(delete-file-recursively "scanpy/tests/notebooks") (delete-file-recursively "scanpy/tests/notebooks")
(delete-file "scanpy/tests/test_clustering.py") (delete-file "scanpy/tests/test_clustering.py")
(delete-file "scanpy/tests/test_datasets.py")
;; TODO: I can't get the plotting tests to work, even with Xvfb. ;; TODO: I can't get the plotting tests to work, even with Xvfb.
(delete-file "scanpy/tests/test_plotting.py") (delete-file "scanpy/tests/test_plotting.py")
@ -13398,8 +13399,8 @@ in RNA-seq data.")
("python-h5py" ,python-h5py) ("python-h5py" ,python-h5py)
("python-igraph" ,python-igraph) ("python-igraph" ,python-igraph)
("python-joblib" ,python-joblib) ("python-joblib" ,python-joblib)
("python-louvain" ,python-louvain)
("python-legacy-api-wrap" ,python-legacy-api-wrap) ("python-legacy-api-wrap" ,python-legacy-api-wrap)
("python-louvain" ,python-louvain)
("python-matplotlib" ,python-matplotlib) ("python-matplotlib" ,python-matplotlib)
("python-natsort" ,python-natsort) ("python-natsort" ,python-natsort)
("python-networkx" ,python-networkx) ("python-networkx" ,python-networkx)
@ -13412,6 +13413,7 @@ in RNA-seq data.")
("python-seaborn" ,python-seaborn) ("python-seaborn" ,python-seaborn)
("python-statsmodels" ,python-statsmodels) ("python-statsmodels" ,python-statsmodels)
("python-tables" ,python-tables) ("python-tables" ,python-tables)
("python-tqdm" ,python-tqdm)
("python-umap-learn" ,python-umap-learn))) ("python-umap-learn" ,python-umap-learn)))
(native-inputs (native-inputs
`(("python-pytest" ,python-pytest) `(("python-pytest" ,python-pytest)