From efefb2be3a3992dacbe8a1c9ed210fb4a80331ab Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 5 Jun 2021 01:47:08 +0200 Subject: [PATCH] gnu: Add r-trajectoryutils. * gnu/packages/bioconductor.scm (r-trajectoryutils): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 56906bddbd..dab37d59de 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4157,6 +4157,36 @@ purposes. The package also contains legacy support for early single-end, ungapped alignment formats.") (license license:artistic2.0))) +(define-public r-trajectoryutils + (package + (name "r-trajectoryutils") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "TrajectoryUtils" version)) + (sha256 + (base32 + "1b7mg3ypp1ay98cav47h9vn692lx0n9b5b0hpansgnkr5prb823b")))) + (properties + `((upstream-name . "TrajectoryUtils"))) + (build-system r-build-system) + (propagated-inputs + `(("r-igraph" ,r-igraph) + ("r-matrix" ,r-matrix) + ("r-s4vectors" ,r-s4vectors) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/TrajectoryUtils") + (synopsis "Single-cell trajectory analysis utilities") + (description + "This package implements low-level utilities for single-cell trajectory +analysis, primarily intended for re-use inside higher-level packages. It +includes a function to create a cluster-level minimum spanning tree and data +structures to hold pseudotime inference results.") + (license license:gpl3))) + (define-public r-slingshot (package (name "r-slingshot")