gnu: fastahack: Build and install shared library and headers.
* gnu/packages/bioinformatics.scm (fastahack)[arguments]: Add phase to build PIE objects. Add custom phase to build dynamic library. Adjust custom 'install phase to install shared library and headers.
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					 1 changed files with 20 additions and 2 deletions
				
			
		|  | @ -15582,10 +15582,28 @@ neural networks.") | |||
|        #:phases | ||||
|        (modify-phases %standard-phases | ||||
|          (delete 'configure) ; There is no configure phase. | ||||
|            (add-after 'unpack 'patch-source | ||||
|              (lambda _ | ||||
|                (substitute* "Makefile" | ||||
|                  (("-c ") "-c -fPIC ")) | ||||
|                #t)) | ||||
|          (add-after 'build 'build-dynamic | ||||
|            (lambda _ | ||||
|              (invoke "g++" | ||||
|                      "-shared" "-o" "libfastahack.so" | ||||
|                      "Fasta.o" "FastaHack.o" "split.o" "disorder.o"))) | ||||
|          (replace 'install | ||||
|            (lambda* (#:key outputs #:allow-other-keys) | ||||
|              (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) | ||||
|                (install-file "fastahack" bin)) | ||||
|              (let* ((out (assoc-ref outputs "out")) | ||||
|                     (lib (string-append out "/lib")) | ||||
|                     (bin (string-append out "/bin"))) | ||||
|                (mkdir-p (string-append out "/include/fastahack")) | ||||
|                (for-each | ||||
|                  (lambda (file) | ||||
|                    (install-file file (string-append out "/include/fastahack"))) | ||||
|                  (find-files "." "\\.h$")) | ||||
|                (install-file "fastahack" bin) | ||||
|                (install-file "libfastahack.so" lib)) | ||||
|              #t))))) | ||||
|     (home-page "https://github.com/ekg/fastahack") | ||||
|     (synopsis "Indexing and sequence extraction from FASTA files") | ||||
|  |  | |||
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