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@ -3,7 +3,7 @@
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;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
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;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
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;;; Copyright © 2016, 2020 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016, 2020, 2021 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2016, 2020 Marius Bakke <mbakke@fastmail.com>
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;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com>
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@ -571,6 +571,40 @@ input and output BAMs must adhere to the PacBio BAM format specification.
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Non-PacBio BAMs will cause exceptions to be thrown.")
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(license license:bsd-3)))
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(define-public pbgzip
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(let ((commit "2b09f97b5f20b6d83c63a5c6b408d152e3982974"))
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(package
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(name "pbgzip")
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(version (git-version "0.0.0" "0" commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/nh13/pbgzip")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1mlmq0v96irbz71bgw5zcc43g1x32zwnxx21a5p1f1ch4cikw1yd"))))
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(build-system gnu-build-system)
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(native-inputs
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`(("autoconf" ,autoconf)
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("automake" ,automake)))
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(inputs
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`(("zlib" ,zlib)))
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(home-page "https://github.com/nh13/pbgzip")
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(synopsis "Parallel Block GZIP")
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(description "This package implements parallel block gzip. For many
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formats, in particular genomics data formats, data are compressed in
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fixed-length blocks such that they can be easily indexed based on a (genomic)
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coordinate order, since typically each block is sorted according to this order.
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This allows for each block to be individually compressed (deflated), or more
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importantly, decompressed (inflated), with the latter enabling random retrieval
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of data in large files (gigabytes to terabytes). @code{pbgzip} is not limited
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to any particular format, but certain features are tailored to genomics data
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formats when enabled. Parallel decompression is somewhat faster, but the true
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speedup comes during compression.")
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(license license:expat))))
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(define-public blasr-libcpp
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(package
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(name "blasr-libcpp")
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Reference in New Issue