gnu: Add r-allelicimbalance.
* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable.master
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@ -3510,3 +3510,44 @@ other molecular biology information available as flat file database (plain
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text files).")
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text files).")
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;; Any version of the GPL.
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;; Any version of the GPL.
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(license (list license:gpl2+))))
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(license (list license:gpl2+))))
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(define-public r-allelicimbalance
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(package
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(name "r-allelicimbalance")
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(version "1.20.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "AllelicImbalance" version))
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(sha256
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(base32
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"03524lj6aw9cskbpxzjmi9g708x6p94mf26yz4j941g1d0mc3z91"))))
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(properties
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`((upstream-name . "AllelicImbalance")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-gridextra" ,r-gridextra)
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("r-gviz" ,r-gviz)
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("r-iranges" ,r-iranges)
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("r-lattice" ,r-lattice)
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("r-latticeextra" ,r-latticeextra)
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("r-nlme" ,r-nlme)
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("r-rsamtools" ,r-rsamtools)
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("r-s4vectors" ,r-s4vectors)
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("r-seqinr" ,r-seqinr)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-variantannotation" ,r-variantannotation)))
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(home-page "https://github.com/pappewaio/AllelicImbalance")
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(synopsis "Investigate allele-specific expression")
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(description
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"This package provides a framework for allele-specific expression
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investigation using RNA-seq data.")
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(license license:gpl3)))
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