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gnu: preseq: Remove references to %outputs and %build-inputs. 

* gnu/packages/bioinformatics.scm (preseq)[arguments]: Replace references to
%outputs and %build-inputs by using a gexp.
master
Ricardo Wurmus 2021-12-04 18:39:35 +01:00
parent 8a446f5e41
commit f33e490334
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GPG Key ID: 197A5888235FACAC
1 changed files with 9 additions and 10 deletions
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19
gnu/packages/bioinformatics.scm
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@ -6883,16 +6883,15 @@ structures, classes for genomic regions, mapped sequencing reads, etc.")
(modify-phases %standard-phases (modify-phases %standard-phases
(delete 'configure)) (delete 'configure))
#:make-flags #:make-flags
(list (string-append "PREFIX=" ,#~(list (string-append "PREFIX=" #$output)
(assoc-ref %outputs "out")) (string-append "LIBBAM="
(string-append "LIBBAM=" #$(this-package-input "samtools")
(assoc-ref %build-inputs "samtools") "/lib/libbam.a")
"/lib/libbam.a") (string-append "SMITHLAB_CPP="
(string-append "SMITHLAB_CPP=" #$(this-package-input "smithlab-cpp")
(assoc-ref %build-inputs "smithlab-cpp") "/lib")
"/lib") "PROGS=preseq"
"PROGS=preseq" "INCLUDEDIRS=$(SMITHLAB_CPP)/../include/smithlab-cpp $(SAMTOOLS_DIR)")))
"INCLUDEDIRS=$(SMITHLAB_CPP)/../include/smithlab-cpp $(SAMTOOLS_DIR)")))
(inputs (inputs
`(("gsl" ,gsl) `(("gsl" ,gsl)
("samtools" ,samtools-0.1) ("samtools" ,samtools-0.1)