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gnu: r-go-db: Move to (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-go-db): Move from here...
* gnu/packages/bioconductor.scm (r-go-db): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'annotation.
master
zimoun 2021-05-21 22:25:43 +02:00 committed by Ricardo Wurmus
parent 14fb30e5f6
commit f3b50aa4fd
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GPG Key ID: 197A5888235FACAC
2 changed files with 22 additions and 24 deletions

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@ -436,6 +436,28 @@ in Biostrings objects.")
ID and species. It is used by functions in the GenomeInfoDb package.")
(license license:artistic2.0)))
(define-public r-go-db
(package
(name "r-go-db")
(version "3.7.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GO.db" version 'annotation))
(sha256
(base32
"0i3wcf5h3n0dawzc1hy0kv74f06j80c47n4p3g3fmrcxlhi3jpa5"))))
(properties
`((upstream-name . "GO.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://bioconductor.org/packages/GO.db")
(synopsis "Annotation maps describing the entire Gene Ontology")
(description
"The purpose of this GO.db annotation package is to provide detailed
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
(define-public r-homo-sapiens
(package
(name "r-homo-sapiens")

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@ -7952,30 +7952,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-go-db
(package
(name "r-go-db")
(version "3.7.0")
(source (origin
(method url-fetch)
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/GO.db_"
version ".tar.gz"))
(sha256
(base32
"0i3wcf5h3n0dawzc1hy0kv74f06j80c47n4p3g3fmrcxlhi3jpa5"))))
(properties
`((upstream-name . "GO.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://bioconductor.org/packages/GO.db")
(synopsis "Annotation maps describing the entire Gene Ontology")
(description
"The purpose of this GO.db annotation package is to provide detailed
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
(define-public r-spp
(package
(name "r-spp")