Merge branch 'master' into core-updates

Makefile.am

@@ -201,6 +201,7 @@ MODULES =					\
   guix/scripts/hash.scm				\
   guix/scripts/pack.scm				\
   guix/scripts/pull.scm				\
+  guix/scripts/processes.scm			\
   guix/scripts/substitute.scm			\
   guix/scripts/authenticate.scm			\
   guix/scripts/refresh.scm			\
@@ -279,10 +280,10 @@ dist_noinst_DATA = guix/tests.scm guix/tests/http.scm
 # Auxiliary files for packages.
 AUX_FILES =						\
   gnu/packages/aux-files/emacs/guix-emacs.el		\
-  gnu/packages/aux-files/linux-libre/4.18-arm.conf	\
+  gnu/packages/aux-files/linux-libre/4.19-arm.conf	\
-  gnu/packages/aux-files/linux-libre/4.18-arm64.conf	\
+  gnu/packages/aux-files/linux-libre/4.19-arm64.conf	\
-  gnu/packages/aux-files/linux-libre/4.18-i686.conf	\
+  gnu/packages/aux-files/linux-libre/4.19-i686.conf	\
-  gnu/packages/aux-files/linux-libre/4.18-x86_64.conf	\
+  gnu/packages/aux-files/linux-libre/4.19-x86_64.conf	\
   gnu/packages/aux-files/linux-libre/4.14-arm.conf	\
   gnu/packages/aux-files/linux-libre/4.14-i686.conf	\
   gnu/packages/aux-files/linux-libre/4.14-x86_64.conf	\
@@ -343,6 +344,7 @@ SCM_TESTS =					\
   tests/ui.scm					\
   tests/status.scm				\
   tests/records.scm				\
+  tests/processes.scm				\
   tests/upstream.scm				\
   tests/combinators.scm				\
   tests/discovery.scm				\

doc/contributing.de.texi

@@ -0,0 +1,537 @@
+@node Mitwirken
+@chapter Mitwirken
+
+Dieses Projekt basiert auf Kooperation, daher benötigen wir Ihre Hilfe, um
+es wachsen zu lassen! Bitte kontaktieren Sie uns auf
+@email{guix-devel@@gnu.org} und @code{#guix} im Freenode-IRC-Netzwerk. Wir
+freuen uns auf Ihre Ideen, Fehlerberichte, Patches und alles, was hilfreich
+für das Projekt ist. Besonders willkommen ist Hilfe bei der Erstellung von
+Paketen (@pxref{Paketrichtlinien}).
+
+@cindex Verhaltensregeln, für Mitwirkende
+@cindex Verhaltenskodex für Mitwirkende
+Wir möchten eine angenehme, freundliche und von Belästigungen freie Umgebung
+bereitstellen, so dass jeder Beiträge nach seinen Fähigkeiten leisten
+kann. Zu diesem Zweck verwendet unser Projekt einen »Verhaltenskodex für
+Mitwirkende«, der von @url{http://contributor-covenant.org/} übernommen
+wurde. Eine übersetzte Fassung finden Sie auf
+@url{https://www.contributor-covenant.org/de/version/1/4/code-of-conduct}
+sowie eine mitgelieferte, englische Fassung in der Datei
+@file{CODE-OF-CONDUCT} im Quellbaum.
+
+Von Mitwirkenden wird nicht erwartet, dass sie in Patches oder in der
+Online-Kommunikation ihre echten Namen preisgeben. Sie können einen
+beliebigen Namen oder ein Pseudonym ihrer Wahl verwenden.
+
+@menu
+* Erstellung aus dem Git::   Das Neueste und Beste.
+* Guix vor der Installation ausführen::  Hacker-Tricks.
+* Perfekt eingerichtet::     Die richtigen Werkzeuge.
+* Code-Stil::                Wie Mitwirkende hygienisch arbeiten.
+* Einreichen von Patches::   Teilen Sie Ihre Arbeit.
+@end menu
+
+@node Erstellung aus dem Git
+@section Erstellung aus dem Git
+
+Wenn Sie an Guix selbst hacken wollen, ist es empfehlenswert, dass Sie die
+neueste Version aus dem Git-Softwarebestand verwenden:
+
+@example
+git clone https://git.savannah.gnu.org/git/guix.git
+@end example
+
+Wenn Sie Guix aus einem Checkout erstellen, sind außer den bereits in den
+Installationsanweisungen genannten Paketen weitere nötig
+(@pxref{Voraussetzungen}).
+
+@itemize
+@item @url{http://gnu.org/software/autoconf/, GNU Autoconf};
+@item @url{http://gnu.org/software/automake/, GNU Automake};
+@item @url{http://gnu.org/software/gettext/, GNU Gettext};
+@item @url{http://gnu.org/software/texinfo/, GNU Texinfo};
+@item @url{http://www.graphviz.org/, Graphviz};
+@item @url{http://www.gnu.org/software/help2man/, GNU Help2man (optional)}.
+@end itemize
+
+Der einfachste Weg, eine Entwicklungsumgebung für Guix einzurichten, ist
+natürlich, Guix zu benutzen! Der folgende Befehl startet eine neue Shell, in
+der alle Abhängigkeiten und Umgebungsvariablen bereits eingerichtet sind, um
+an Guix zu arbeiten:
+
+@example
+guix environment guix
+@end example
+
+In @xref{Aufruf von guix environment} finden Sie weitere Informationen zu
+diesem Befehl. Zusätzliche Abhängigkeiten können mit @option{--ad-hoc}
+hinzugefügt werden:
+
+@example
+guix environment guix --ad-hoc help2man git strace
+@end example
+
+Führen Sie @command{./bootstrap} aus, um die Infrastruktur des
+Erstellungssystems mit Autoconf und Automake zu erstellen. Möglicherweise
+erhalten Sie eine Fehlermeldung wie diese:
+
+@example
+configure.ac:46: error: possibly undefined macro: PKG_CHECK_MODULES
+@end example
+
+@noindent
+Das bedeutet wahrscheinlich, dass Autoconf @file{pkg.m4} nicht finden
+konnte, welches von pkg-config bereitgestellt wird. Stellen Sie sicher, dass
+@file{pkg.m4} verfügbar ist. Gleiches gilt für den von Guile
+bereitgestellten Makrosatz @file{guile.m4}. Wenn Sie beispielsweise Automake
+in @file{/usr/local} installiert haben, würde in @file{/usr/share} nicht
+nach @file{.m4}-Dateien geschaut. In einem solchen Fall müssen Sie folgenden
+Befehl aufrufen:
+
+@example
+export ACLOCAL_PATH=/usr/share/aclocal
+@end example
+
+In @xref{Macro Search Path,,, automake, The GNU Automake Manual} finden Sie
+weitere Informationen.
+
+Dann führen Sie wie gewohnt @command{./configure} aus. Achten Sie darauf,
+@code{--localstatedir=@var{Verzeichnis}} zu übergeben, wobei
+@var{Verzeichnis} der von Ihrer aktuellen Installation verwendete
+@code{localstatedir}-Wert ist (weitere Informationen auf @pxref{Der Store}).
+
+Zum Schluss müssen Sie @code{make check} aufrufen, um die Tests auszuführen
+(@pxref{Die Testsuite laufen lassen}). Falls etwas fehlschlägt, werfen Sie einen
+Blick auf die Installationsanweisungen (@pxref{Installation}) oder senden
+Sie eine E-Mail an @email{guix-devel@@gnu.org, Mailingliste}.
+
+
+@node Guix vor der Installation ausführen
+@section Guix vor der Installation ausführen
+
+Um eine gesunde Arbeitsumgebung zu behalten, ist es hilfreich, die im
+lokalen Quellbaum vorgenommenen Änderungen zunächst zu testen, ohne sie
+tatsächlich zu installieren. So können Sie zwischen Ihrem
+Endnutzer-»Straßenanzug« und Ihrem »Faschingskostüm« unterscheiden.
+
+To that end, all the command-line tools can be used even if you have not run
+@code{make install}.  To do that, you first need to have an environment with
+all the dependencies available (@pxref{Erstellung aus dem Git}), and then simply
+prefix each command with @command{./pre-inst-env} (the @file{pre-inst-env}
+script lives in the top build tree of Guix), as in@footnote{The @option{-E}
+flag to @command{sudo} guarantees that @code{GUILE_LOAD_PATH} is correctly
+set such that @command{guix-daemon} and the tools it uses can find the Guile
+modules they need.}:
+
+@example
+$ sudo -E ./pre-inst-env guix-daemon --build-users-group=guixbuild
+$ ./pre-inst-env guix build hello
+@end example
+
+@noindent
+Entsprechend, um eine Guile-Sitzung zu öffnen, die die Guix-Module benutzt:
+
+@example
+$ ./pre-inst-env guile -c '(use-modules (guix utils)) (pk (%current-system))'
+
+;;; ("x86_64-linux")
+@end example
+
+@noindent
+@cindex REPL
+@cindex Lese-Auswerten-Schreiben-Schleife
+@dots{} und auf einer REPL (@pxref{Using Guile Interactively,,, guile, Guile
+Reference Manual}):
+
+@example
+$ ./pre-inst-env guile
+scheme@@(guile-user)> ,use(guix)
+scheme@@(guile-user)> ,use(gnu)
+scheme@@(guile-user)> (define snakes
+                       (fold-packages
+                         (lambda (package lst)
+                           (if (string-prefix? "python"
+                                               (package-name package))
+                               (cons package lst)
+                               lst))
+                         '()))
+scheme@@(guile-user)> (length snakes)
+$1 = 361
+@end example
+
+Das @command{pre-inst-env}-Skript richtet alle Umgebungsvariablen ein, die
+nötig sind, um dies zu ermöglichen, einschließlich @env{PATH} und
+@env{GUILE_LOAD_PATH}.
+
+Beachten Sie, dass @command{./pre-inst-env guix pull} den lokalen Quellbaum
+@emph{nicht} aktualisiert; es aktualisiert lediglich die symbolische
+Verknüpfung @file{~/.config/guix/current} (@pxref{Aufruf von guix pull}).  Um
+Ihren lokalen Quellbaum zu aktualisieren, müssen Sie stattdessen
+@command{git pull} benutzen.
+
+
+@node Perfekt eingerichtet
+@section Perfekt eingerichtet
+
+Um perfekt für das Hacken an Guix eingerichtet zu sein, brauchen Sie an sich
+dasselbe wie um perfekt für das Hacken mit Guile (@pxref{Using Guile in
+Emacs,,, guile, Guile Reference Manual}).  Zunächst brauchen Sie mehr als
+ein Textverarbeitungsprogramm, Sie brauchen
+@url{http://www.gnu.org/software/emacs, Emacs}, ermächtigt vom wunderbaren
+@url{http://nongnu.org/geiser/, Geiser}.
+
+Geiser ermöglicht interaktive und inkrementelle Entwicklung aus Emacs
+heraus: Code kann in Puffern kompiliert und ausgewertet werden. Zugang zu
+Online-Dokumentation (Docstrings) steht ebenso zur Verfügung wie
+kontextabhängige Vervollständigung, @kbd{M-.} um zu einer Objektdefinition
+zu springen, eine REPL, um Ihren Code auszuprobieren, und mehr
+(@pxref{Einführung,,, geiser, Geiser User Manual}). Zur bequemen
+Guix-Entwicklung sollten Sie Guiles Ladepfad so ergänzen, dass die
+Quelldateien in Ihrem Checkout gefunden werden.
+
+@lisp
+;; @r{Angenommen das Guix-Checkout ist in ~/src/guix.}
+(with-eval-after-load 'geiser-guile
+  (add-to-list 'geiser-guile-load-path "~/src/guix"))
+@end lisp
+
+Um den Code tatsächlich zu bearbeiten, bietet Emacs schon einen netten
+Scheme-Modus. Aber Sie dürfen auch
+@url{http://www.emacswiki.org/emacs/ParEdit, Paredit} nicht verpassen. Es
+bietet Hilfsmittel, um direkt mit dem Syntaxbaum zu arbeiten, und kann so
+zum Beispiel einen S-Ausdruck hochheben oder ihn umhüllen, ihn verschlucken
+oder den nachfolgenden S-Ausdruck verwerfen, etc.
+
+@cindex Code-Schnipsel
+@cindex Vorlagen
+@cindex Tipparbeit sparen
+Wir bieten auch Vorlagen für häufige Git-Commit-Nachrichten und
+Paketdefinitionen im Verzeichnis @file{etc/snippets}. Diese Vorlagen können
+mit @url{http://joaotavora.github.io/yasnippet/, YASnippet} zusammen benutzt
+werden, um kurze Auslöse-Zeichenketten zu interaktiven Textschnipseln
+umzuschreiben. Vielleicht möchten Sie das Schnipselverzeichnis zu Ihrer
+@var{yas-snippet-dirs}-Variablen in Emacs hinzufügen.
+
+@lisp
+;; @r{Angenommen das Guix-Checkout ist in ~/src/guix.}
+(with-eval-after-load 'yasnippet
+  (add-to-list 'yas-snippet-dirs "~/src/guix/etc/snippets"))
+@end lisp
+
+The commit message snippets depend on @url{https://magit.vc/, Magit} to
+display staged files.  When editing a commit message type @code{add}
+followed by @kbd{TAB} to insert a commit message template for adding a
+package; type @code{update} followed by @kbd{TAB} to insert a template for
+updating a package; type @code{https} followed by @kbd{TAB} to insert a
+template for changing the home page URI of a package to HTTPS.
+
+Das Hauptschnipsel für @code{scheme-mode} wird ausgelöst, indem Sie
+@code{package...} gefolgt von @kbd{TAB} eintippen. Dieses Snippet fügt auch
+die Auslöse-Zeichenkette @code{origin...} ein, die danach weiter
+umgeschrieben werden kann. Das @code{origin}-Schnipsel kann wiederum andere
+Auslöse-Zeichenketten einfügen, die alle auf @code{...} enden, was selbst
+wieder weiter umgeschrieben werden kann.
+
+
+@node Code-Stil
+@section Code-Stil
+
+Im Allgemeinen folgt unser Code den GNU Coding Standards (@pxref{Top,,,
+standards, GNU Coding Standards}). Da diese aber nicht viel über Scheme zu
+sagen haben, folgen hier einige zusätzliche Regeln.
+
+@menu
+* Programmierparadigmen::    Wie Sie Ihre Elemente zusammenstellen.
+* Module::                   Wo Sie Ihren Code unterbringen.
+* Datentypen und Mustervergleich::  Implementierung von Datenstrukturen.
+* Formatierung von Code::    Schreibkonventionen.
+@end menu
+
+@node Programmierparadigmen
+@subsection Programmierparadigmen
+
+Scheme-Code wird in Guix auf rein funktionale Weise geschrieben. Eine
+Ausnahme ist Code, der mit Ein- und Ausgabe zu tun hat, und Prozeduren, die
+grundlegende Konzepte implementieren, wie zum Beispiel die Prozedur
+@code{memoize}.
+
+@node Module
+@subsection Module
+
+Guile-Module, die beim Erstellen nutzbar sein sollen, müssen im Namensraum
+@code{(guix build @dots{})} leben. Sie dürfen auf keine anderen Guix- oder
+GNU-Modules Bezug nehmen. Jedoch ist es in Ordnung, wenn ein »wirtsseitiges«
+Modul ein erstellungsseitiges Modul benutzt.
+
+Module, die mit dem weiteren GNU-System zu tun haben, sollten im Namensraum
+@code{(gnu @dots{})} und nicht in @code{(guix @dots{})} stehen.
+
+@node Datentypen und Mustervergleich
+@subsection Datentypen und Mustervergleich
+
+Im klassischen Lisp gibt es die Tendenz, Listen zur Darstellung von allem zu
+benutzen, und diese dann »händisch« zu durchlaufen mit @code{car},
+@code{cdr}, @code{cadr} und so weiter. Dieser Stil ist aus verschiedenen
+Gründen problematisch, insbesondere wegen der Tatsache, dass er schwer zu
+lesen, schnell fehlerbehaftet und ein Hindernis beim Melden von Typfehlern
+ist.
+
+Guix-Code sollte angemessene Datentypen definieren (zum Beispiel mit
+@code{define-record-type*}) statt Listen zu missbrauchen. Außerdem sollte er
+das @code{(ice-9 match)}-Modul von Guile zum Mustervergleich benutzen,
+besonders mit Listen.
+
+@node Formatierung von Code
+@subsection Formatierung von Code
+
+@cindex Formatierung von Code
+@cindex Code-Stil
+Beim Schreiben von Scheme-Code halten wir uns an die üblichen
+Gepflogenheiten unter Scheme-Programmierern. Im Allgemeinen bedeutet das,
+dass wir uns an @url{http://mumble.net/~campbell/scheme/style.txt,
+Riastradh's Lisp Style Rules} halten. Es hat sich ergeben, dass dieses
+Dokument auch die Konventionen beschreibt, die im Code von Guile
+hauptsächlich verwendet werden. Es ist gut durchdacht und schön geschrieben,
+also lesen Sie es bitte.
+
+Ein paar in Guix eingeführte Sonderformen, wie zum Beispiel das
+@code{substitute*}-Makro, haben abweichende Regeln für die Einrückung. Diese
+sind in der Datei @file{.dir-locals.el} definiert, die Emacs automatisch
+benutzt. Beachten Sie auch, dass Emacs-Guix einen Modus namens
+@code{guix-devel-mode} bereitstellt, der Guix-Code richtig einrückt und
+hervorhebt (@pxref{Development,,, emacs-guix, The Emacs-Guix Reference
+Manual}).
+
+@cindex Einrückung, Code-
+@cindex Formatierung, Code-
+Falls Sie nicht Emacs verwenden, sollten Sie sicherstellen, dass Ihr Editor
+diese Regeln kennt. Um eine Paketdefinition automatisch einzurücken, können
+Sie auch Folgendes ausführen:
+
+@example
+./etc/indent-code.el gnu/packages/@var{Datei}.scm @var{Paket}
+@end example
+
+@noindent
+Dadurch wird die Definition von @var{Paket} in
+@file{gnu/packages/@var{Datei}.scm} automatisch eingerückt, indem Emacs im
+Batch-Modus läuft. Um die Einrückung in einer gesamten Datei vorzunehmen,
+lassen Sie das zweite Argument weg:
+
+@example
+./etc/indent-code.el gnu/services/@var{Datei}.scm
+@end example
+
+@cindex Vim, zum Editieren von Scheme-Code
+Wenn Sie mit Code mit Vim bearbeiten, empfehlen wir, dass Sie @code{:set
+autoindent} ausführen, damit Ihr Code automatisch eingerückt wird, während
+Sie ihn schreiben. Außerdem könnte Ihnen
+@uref{https://www.vim.org/scripts/script.php?script_id=3998,
+@code{paredit.vim}} dabei helfen, mit all diesen Klammern fertigzuwerden.
+
+Wir fordern von allen Prozeduren auf oberster Ebene, dass sie über einen
+Docstring verfügen. Diese Voraussetzung kann jedoch bei einfachen, privaten
+Prozeduren im Namensraum @code{(guix build @dots{})} aufgeweicht werden.
+
+Prozeduren sollten nicht mehr als vier positionsbestimmte Parameter
+haben. Benutzen Sie Schlüsselwort-Parameter für Prozeduren, die mehr als
+vier Parameter entgegennehmen.
+
+
+@node Einreichen von Patches
+@section Einreichen von Patches
+
+Die Entwicklung wird mit Hilfe des verteilten Versionskontrollsystems Git
+durchgeführt. Daher ist eine ständige Verbindung zum Repository nicht
+unbedingt erforderlich. Wir begrüßen Beiträge in Form von Patches, die
+mittels @code{git format-patch} erstellt und an die Mailingliste
+@email{guix-patches@@gnu.org} geschickt werden.
+
+Diese Mailing-Liste setzt auf einer Debbugs-Instanz auf, die zugänglich ist
+unter @uref{https://bugs.gnu.org/guix-patches}, wodurch wir den Überblick
+über Eingereichtes behalten können. Jede an diese Mailing-Liste gesendete
+Nachricht bekommt eine neue Folgenummer zugewiesen, so dass man eine
+Folge-Email zur Einreichung an @code{@var{NNN}@@debbugs.gnu.org} senden
+kann, wobei @var{NNN} für die Folgenummer steht (@pxref{Senden einer Patch-Reihe}).
+
+Bitte schreiben Sie Commit-Logs im ChangeLog-Format (@pxref{Change Logs,,,
+standards, GNU Coding Standards}); dazu finden Sie Beispiele unter den
+bisherigen Commits.
+
+Bevor Sie einen Patch einreichen, der eine Paketdefinition hinzufügt oder
+verändert, gehen Sie bitte diese Prüfliste:
+
+@enumerate
+@item
+Wenn die Autoren der verpackten Software eine kryptographische Signatur für
+den Tarball der Veröffentlichung anbieten, so machen Sie sich bitte die
+Mühe, die Echtheit des Archivs zu überprüfen.  Für eine abgetrennte
+GPG-Signaturdatei würden Sie das mit dem Befehl @code{gpg --verify} tun.
+
+@item
+Nehmen Sie sich die Zeit, eine passende Zusammenfassung und Beschreibung für
+das Paket zu verfassen. Unter @xref{Zusammenfassungen und Beschreibungen} finden Sie
+dazu einige Richtlinien.
+
+@item
+Verwenden Sie @code{guix lint @var{Paket}}, wobei @var{Paket} das neue oder
+geänderte Paket bezeichnet, und beheben Sie alle gemeldeten Fehler
+(@pxref{Aufruf von guix lint}).
+
+@item
+Stellen Sie sicher, dass das Paket auf Ihrer Plattform erstellt werden kann,
+indem Sie @code{guix build @var{Paket}} ausführen.
+
+@item
+@cindex gebündelt
+Achten Sie darauf, dass im Paket keine Software gebündelt mitgeliefert wird,
+die bereits in separaten Paketen zur Verfügung steht.
+
+Manchmal enthalten Pakete Kopien des Quellcodes ihrer Abhängigkeiten, um
+Nutzern die Installation zu erleichtern. Als eine Distribution wollen wir
+jedoch sicherstellen, dass für solche Pakete die schon in der Distribution
+verfügbare Fassung benutzen, sofern es eine gibt. Dadurch wird sowohl der
+Ressourcenverbrauch optimiert (die Abhängigkeit wird so nur einmal erstellt
+und gespeichert) als auch der Distribution die Möglichkeit gegeben,
+ergänzende Änderungen durchzuführen, um beispielsweise
+Sicherheitsaktualisierungen für ein bestimmtes Paket an nur einem Ort
+einzuspielen, die das gesamte System betreffen — gebündelt mitgelieferte
+Kopien würden dies verhindern.
+
+@item
+Schauen Sie sich das von @command{guix size} ausgegebene Profil an
+(@pxref{Aufruf von guix size}). Dadurch können Sie Referenzen auf andere
+Pakete finden, die ungewollt vorhanden sind. Dies kann auch dabei helfen, zu
+entscheiden, ob das Paket aufgespalten werden sollte (@pxref{Pakete mit mehreren Ausgaben.}) und welche optionalen Abhängigkeiten verwendet werden
+sollten.
+
+@item
+Achten Sie bei wichtigen Änderungen darauf, dass abhängige Pakete (falls
+vorhanden) nicht von der Änderung beeinträchtigt werden; @code{guix refresh
+--list-dependent @var{Paket}} hilft Ihnen dabei (@pxref{Aufruf von guix refresh}).
+
+@c ===========================================================================
+@c
+@c This file was generated with po4a. Translate the source file.
+@c
+@c ===========================================================================
+@c See <https://lists.gnu.org/archive/html/guix-devel/2016-10/msg00933.html>.
+@cindex Branching-Strategie
+@cindex Neuerstellungs-Zeitplan
+Je nachdem, wieviele abhängige Pakete es gibt, und entsprechend wieviele
+Neuerstellungen dadurch nötig würden, finden Commits auf anderen Branches
+statt, nach ungefähr diesen Regeln:
+
+@table @asis
+@item 300 abhängige Pakete oder weniger
+@code{master}-Branch (störfreie Änderungen).
+
+@item zwischen 300 und 1200 abhängige Pakete
+@code{staging}-Branch (störfreie Änderungen). Dieser Branch wird circa alle
+3 Wochen in @code{master} gemerget. Themenbezogene Änderungen (z.B. eine
+Aktualisierung der GNOME-Plattform) können stattdessen auch auf einem
+eigenen Branch umgesetzt werden (wie @code{gnome-updates}).
+
+@item mehr als 1200 abhängige Pakete
+@code{core-updates}-Branch (kann auch größere und womöglich andere Software
+beeinträchtigende Änderungen umfassen). Dieser Branch wird planmäßig in
+@code{master} alle 2,5 Monate oder so gemerget.
+@end table
+
+All diese Branches werden kontinuierlich
+@uref{https://hydra.gnu.org/project/gnu, auf unserer Build-Farm} erstellt
+und in @code{master} gemerget, sobald alles erfolgreich erstellt worden
+ist. Dadurch können wir Probleme beheben, bevor sie bei Nutzern auftreten,
+und zudem das Zeitfenster, während dessen noch keine vorerstellten
+Binärdateien verfügbar sind, verkürzen.
+
+@c TODO: It would be good with badges on the website that tracks these
+@c branches.  Or maybe even a status page.
+Im Allgemeinen werden Branches außer @code{master} als @emph{unveränderlich}
+angesehen, wenn sie kürzlich ausgewertet wurden oder ein entsprechender
+@code{-next}-Branch existiert. Bitte fragen Sie auf der Mailing-Liste oder
+IRC, wenn Sie sich nicht sicher sind, wo ein Patch eingespielt werden
+sollte.
+
+@item
+@cindex Determinismus, von Erstellungsprozessen
+@cindex Reproduzierbare Erstellungen, Überprüfung
+Überprüfen Sie, ob der Erstellungsprozess deterministisch ist. Dazu prüfen
+Sie typischerweise, ob eine unabhängige Erstellung des Pakets genau dasselbe
+Ergebnis wie Ihre Erstellung hat, Bit für Bit.
+
+Dies können Sie leicht tun, indem Sie dasselbe Paket mehrere Male
+hintereinander auf Ihrer Maschine erstellen (@pxref{Aufruf von guix build}):
+
+@example
+guix build --rounds=2 mein-paket
+@end example
+
+Dies reicht aus, um eine ganze Klasse häufiger Ursachen von
+Nichtdeterminismus zu finden, wie zum Beispiel Zeitstempel oder
+zufallsgenerierte Ausgaben im Ergebnis der Erstellung.
+
+Eine weitere Möglichkeit ist, @command{guix challenge} (@pxref{Aufruf von guix challenge}) zu benutzen. Sie können es ausführen, sobald ein Paket commitet
+und von @code{hydra.gnu.org} erstellt wurde, um zu sehen, ob dort dasselbe
+Ergebnis wie bei Ihnen geliefert wurde. Noch besser: Finden Sie eine andere
+Maschine, die das Paket erstellen kann, und führen Sie @command{guix
+publish} aus. Da sich die entfernte Erstellungsmaschine wahrscheinlich von
+Ihrer unterscheidet, können Sie auf diese Weise Probleme durch
+Nichtdeterminismus erkennen, die mit der Hardware zu tun haben — zum
+Beispiel die Nutzung anderer Befehlssatzerweiterungen — oder mit dem
+Betriebssystem-Kernel — zum Beispiel, indem @code{uname} oder
+@file{/proc}-Dateien verwendet werden.
+
+@item
+Beim Schreiben von Dokumentation achten Sie bitte auf eine
+geschlechtsneutrale Wortwahl, wenn Sie sich auf Personen beziehen, wie
+@uref{https://en.wikipedia.org/wiki/Singular_they, »they«@comma{}
+»their«@comma{} »them« im Singular}, und so weiter.
+
+@item
+Stelllen Sie sicher, dass Ihr Patch nur einen Satz zusammengehöriger
+Änderungen umfasst. Das Zusammenfassen nicht zusammengehöriger Änderungen
+erschwert und bremst das Durchsehen Ihres Patches.
+
+Beispiele für nicht zusammengehörige Änderungen sind das Hinzufügen mehrerer
+Pakete auf einmal, oder das Aktualisieren eines Pakets auf eine neue Version
+zusammen mit Fehlerbehebungen für das Paket.
+
+@item
+Bitte befolgen Sie unsere Richtlinien für die Code-Formatierung, womöglich
+wollen Sie dies automatisch tun lassen durch das Skript
+@command{etc/indent-code.el} (@pxref{Formatierung von Code}).
+
+@item
+When possible, use mirrors in the source URL (@pxref{Aufruf von guix download}).  Use reliable URLs, not generated ones.  For instance, GitHub
+archives are not necessarily identical from one generation to the next, so
+in this case it's often better to clone the repository.  Don't use the
+@command{name} field in the URL: it is not very useful and if the name
+changes, the URL will probably be wrong.
+
+@end enumerate
+
+Bitte benutzen Sie @samp{[PATCH] @dots{}} als Betreff, wenn Sie einen Patch
+an die Mailing-Liste schicken. Sie können dazu Ihr E-mail-Programm oder den
+Befehl @command{git send-email} benutzen (@pxref{Senden einer Patch-Reihe}). Wir bevorzugen es, Patches als reine Textnachrichten zu erhalten,
+entweder eingebettet (inline) oder als MIME-Anhänge. Sie sind dazu
+angehalten, zu überprüfen, ob Ihr Mail-Programm solche Dinge wie
+Zeilenumbrüche oder die Einrückung verändert, wodurch die Patches womöglich
+nicht mehr funktionieren.
+
+Wenn dadurch ein Fehler behoben wurde, schließen Sie bitte den Thread, indem
+Sie eine E-mail an @email{@var{NNN}-done@@debbugs.gnu.org} senden.
+
+@unnumberedsubsec Senden einer Patch-Reihe
+@anchor{Senden einer Patch-Reihe}
+@cindex Patch-Reihe
+@cindex @code{git send-email}
+@cindex @code{git-send-email}
+
+@c Debbugs bug: https://debbugs.gnu.org/db/15/15361.html
+Wenn Sie eine Patch-Reihe senden (z.B. mit @code{git send-email}), schicken
+Sie bitte als Erstes eine Nachricht an @email{guix-patches@@gnu.org} und
+dann nachfolgende Patches an @email{@var{NNN}@@debbugs.gnu.org}, um
+sicherzustellen, dass sie zusammen bearbeitet werden. Siehe
+@uref{https://debbugs.gnu.org/Advanced.html, die Debbugs-Dokumentation} für
+weitere Informationen.

doc/guix.texi

@@ -50,6 +50,7 @@ Copyright @copyright{} 2018 Oleg Pykhalov@*
 Copyright @copyright{} 2018 Mike Gerwitz@*
 Copyright @copyright{} 2018 Pierre-Antoine Rouby@*
 Copyright @copyright{} 2018 Gábor Boskovits@*
+Copyright @copyright{} 2018 Florian Pelz@*
 
 Permission is granted to copy, distribute and/or modify this document
 under the terms of the GNU Free Documentation License, Version 1.3 or
@@ -101,8 +102,9 @@ package management tool written for the GNU system.
 @c how to join your own translation team and how to report issues with the
 @c translation.
 This manual is also available in French (@pxref{Top,,, guix.fr, Manuel de
-référence de GNU Guix}).  If you would like to translate it in your native
+référence de GNU Guix}) and German (@pxref{Top,,, guix.de, Referenzhandbuch
-language, consider joining the
+zu GNU Guix}).  If you would like to translate it in your native language,
+consider joining the
 @uref{https://translationproject.org/domain/guix-manual.html, Translation
 Project}.
 
@@ -193,6 +195,7 @@ Utilities
 * Invoking guix copy::          Copying to and from a remote store.
 * Invoking guix container::     Process isolation.
 * Invoking guix weather::       Assessing substitute availability.
+* Invoking guix processes::     Listing client processes.
 
 Invoking @command{guix build}
 
@@ -1227,17 +1230,20 @@ etc.  This helps achieve reproducible builds (@pxref{Features}).
 
 When the daemon performs a build on behalf of the user, it creates a
 build directory under @file{/tmp} or under the directory specified by
-its @code{TMPDIR} environment variable; this directory is shared with
+its @code{TMPDIR} environment variable.  This directory is shared with
-the container for the duration of the build.  Be aware that using a
+the container for the duration of the build, though within the container,
-directory other than @file{/tmp} can affect build results---for example,
+the build tree is always called @file{/tmp/guix-build-@var{name}.drv-0}.
-with a longer directory name, a build process that uses Unix-domain
-sockets might hit the name length limitation for @code{sun_path}, which
-it would otherwise not hit.
 
 The build directory is automatically deleted upon completion, unless the
 build failed and the client specified @option{--keep-failed}
 (@pxref{Invoking guix build, @option{--keep-failed}}).
 
+The daemon listens for connections and spawns one sub-process for each session
+started by a client (one of the @command{guix} sub-commands.)  The
+@command{guix processes} command allows you to get an overview of the activity
+on your system by viewing each of the active sessions and clients.
+@xref{Invoking guix processes}, for more information.
+
 The following command-line options are supported:
 
 @table @code
@@ -6051,6 +6057,7 @@ the Scheme programming interface of Guix in a convenient way.
 * Invoking guix copy::          Copying to and from a remote store.
 * Invoking guix container::     Process isolation.
 * Invoking guix weather::       Assessing substitute availability.
+* Invoking guix processes::     Listing client processes.
 @end menu
 
 @node Invoking guix build
@@ -8751,6 +8758,61 @@ with the @code{-m} option of @command{guix package} (@pxref{Invoking
 guix package}).
 @end table
 
+@node Invoking guix processes
+@section Invoking @command{guix processes}
+
+The @command{guix processes} command can be useful to developers and system
+administrators, especially on multi-user machines and on build farms: it lists
+the current sessions (connections to the daemon), as well as information about
+the processes involved@footnote{Remote sessions, when @command{guix-daemon} is
+started with @option{--listen} specifying a TCP endpoint, are @emph{not}
+listed.}.  Here's an example of the information it returns:
+
+@example
+$ sudo guix processes
+SessionPID: 19002
+ClientPID: 19090
+ClientCommand: guix environment --ad-hoc python
+
+SessionPID: 19402
+ClientPID: 19367
+ClientCommand: guix publish -u guix-publish -p 3000 -C 9 @dots{}
+
+SessionPID: 19444
+ClientPID: 19419
+ClientCommand: cuirass --cache-directory /var/cache/cuirass @dots{}
+LockHeld: /gnu/store/@dots{}-perl-ipc-cmd-0.96.lock
+LockHeld: /gnu/store/@dots{}-python-six-bootstrap-1.11.0.lock
+LockHeld: /gnu/store/@dots{}-libjpeg-turbo-2.0.0.lock
+ChildProcess: 20495: guix offload x86_64-linux 7200 1 28800
+ChildProcess: 27733: guix offload x86_64-linux 7200 1 28800
+ChildProcess: 27793: guix offload x86_64-linux 7200 1 28800
+@end example
+
+In this example we see that @command{guix-daemon} has three clients:
+@command{guix environment}, @command{guix publish}, and the Cuirass continuous
+integration tool; their process identifier (PID) is given by the
+@code{ClientPID} field.  The @code{SessionPID} field gives the PID of the
+@command{guix-daemon} sub-process of this particular session.
+
+The @code{LockHeld} fields show which store items are currently locked by this
+session, which corresponds to store items being built or substituted (the
+@code{LockHeld} field is not displayed when @command{guix processes} is not
+running as root.)  Last, by looking at the @code{ChildProcess} field, we
+understand that these three builds are being offloaded (@pxref{Daemon Offload
+Setup}).
+
+The output is in Recutils format so we can use the handy @command{recsel}
+command to select sessions of interest (@pxref{Selection Expressions,,,
+recutils, GNU recutils manual}).  As an example, the command shows the command
+line and PID of the client that triggered the build of a Perl package:
+
+@example
+$ sudo guix processes | \
+    recsel -p ClientPID,ClientCommand -e 'LockHeld ~ "perl"'
+ClientPID: 19419
+ClientCommand: cuirass --cache-directory /var/cache/cuirass @dots{}
+@end example
 
 @c *********************************************************************
 @node GNU Distribution
@@ -13895,7 +13957,7 @@ Users need to be in the @code{lp} group to access the D-Bus service.
 @cindex PulseAudio, sound support
 
 The @code{(gnu services sound)} module provides a service to configure the
-Advanced Linux Sound Architecture (ALSA) system, which making PulseAudio the
+Advanced Linux Sound Architecture (ALSA) system, which makes PulseAudio the
 preferred ALSA output driver.
 
 @deffn {Scheme Variable} alsa-service-type
@@ -16104,10 +16166,10 @@ before switching over to opus audio codec.
 How deep channels can be nested at maximum.
 
 @item @code{channelname-regex} (default: @code{#f})
-A string in from of a Qt regular expression that channel names must conform to.
+A string in form of a Qt regular expression that channel names must conform to.
 
 @item @code{username-regex} (default: @code{#f})
-A string in from of a Qt regular expression that user names must conform to.
+A string in form of a Qt regular expression that user names must conform to.
 
 @item @code{text-message-length} (default: @code{5000})
 Maximum size in bytes that a user can send in one text chat message.
@@ -16119,7 +16181,7 @@ Maximum size in bytes that a user can send in one image message.
 If it is set to @code{#t} clients that use weak password authentification
 will not be accepted. Users must have completed the certificate wizard to join.
 
-@item @code{remember-channel?} (defualt @code{#f})
+@item @code{remember-channel?} (default: @code{#f})
 Should murmur remember the last channel each user was in when they disconnected
 and put them into the remembered channel when they rejoin.
 
@@ -16144,7 +16206,7 @@ Murmur also stores logs in the database, which are accessible via RPC.
 The default is 31 days of months, but you can set this setting to 0 to keep logs forever,
 or -1 to disable logging to the database.
 
-@item @code{obfuscate-ips?} (default @code{#t})
+@item @code{obfuscate-ips?} (default: @code{#t})
 Should logged ips be obfuscated to protect the privacy of users.
 
 @item @code{ssl-cert} (default: @code{#f})
@@ -16546,7 +16608,7 @@ the nginx web server, and also a fastcgi wrapper daemon.
 @deffn {Scheme Variable} httpd-service-type
 Service type for the @uref{https://httpd.apache.org/,Apache HTTP} server
 (@dfn{httpd}).  The value for this service type is a
-@code{https-configuration} record.
+@code{httpd-configuration} record.
 
 A simple example configuration is given below.
 
@@ -16612,6 +16674,10 @@ within the store, for example @code{(file-append mod-wsgi
 @end table
 @end deffn
 
+@defvr {Scheme Variable} %default-httpd-modules
+A default list of @code{httpd-module} objects.
+@end defvr
+
 @deffn {Data Type} httpd-config-file
 This data type represents a configuration file for the httpd service.
 
@@ -16620,6 +16686,32 @@ This data type represents a configuration file for the httpd service.
 The modules to load. Additional modules can be added here, or loaded by
 additional configuration.
 
+For example, in order to handle requests for PHP files, you can use Apache’s
+@code{mod_proxy_fcgi} module along with @code{php-fpm-service-type}:
+
+@example
+(service httpd-service-type
+         (httpd-configuration
+          (config
+           (httpd-config-file
+            (modules (cons*
+                      (httpd-module
+                       (name "proxy_module")
+                       (file "modules/mod_proxy.so"))
+                      (httpd-module
+                       (name "proxy_fcgi_module")
+                       (file "modules/mod_proxy_fcgi.so"))
+                      %default-httpd-modules))
+            (extra-config (list "\
+<FilesMatch \\.php$>
+    SetHandler \"proxy:unix:/var/run/php-fpm.sock|fcgi://localhost/\"
+</FilesMatch>"))))))
+(service php-fpm-service-type
+         (php-fpm-configuration
+          (socket "/var/run/php-fpm.sock")
+          (socket-group "httpd")))
+@end example
+
 @item @code{server-root} (default: @code{httpd})
 The @code{ServerRoot} in the configuration file, defaults to the httpd
 package. Directives including @code{Include} and @code{LoadModule} are

doc/local.mk

@@ -22,7 +22,8 @@
 # along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 info_TEXINFOS = %D%/guix.texi \
-  %D%/guix.fr.texi
+  %D%/guix.fr.texi \
+  %D%/guix.de.texi
 
 %C%_guix_TEXINFOS = \
   %D%/contributing.texi \
@@ -54,7 +55,9 @@ OS_CONFIG_EXAMPLES_TEXI =			\
   %D%/os-config-lightweight-desktop.texi
 
 TRANSLATED_INFO = \
+  %D%/guix.de.texi \
   %D%/guix.fr.texi \
+  %D%/contributing.de.texi \
   %D%/contributing.fr.texi
 
 # Bundle this file so that makeinfo finds it in out-of-source-tree builds.

gnu/artwork.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2015 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014, 2015, 2018 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -33,7 +33,7 @@
     (origin
       (method git-fetch)
       (uri (git-reference
-             (url "git://git.savannah.gnu.org/guix/guix-artwork.git")
+             (url "https://git.savannah.gnu.org/git/guix/guix-artwork.git")
              (commit commit)))
       (file-name (string-append "guix-artwork-" (string-take commit 7)
                                 "-checkout"))

gnu/build/install.scm

@@ -160,6 +160,7 @@ deduplicates files common to CLOSURE and the rest of PREFIX."
 
 (define* (populate-single-profile-directory directory
                                             #:key profile closure
+                                            (profile-name "guix-profile")
                                             deduplicate?
                                             register? schema)
   "Populate DIRECTORY with a store containing PROFILE, whose closure is given
@@ -169,6 +170,9 @@ When REGISTER? is true, initialize DIRECTORY/var/guix/db to reflect the
 contents of the store; DEDUPLICATE? determines whether to deduplicate files in
 the store.
 
+PROFILE-NAME is the name of the profile being created under
+/var/guix/profiles, typically either \"guix-profile\" or \"current-guix\".
+
 This is used to create the self-contained tarballs with 'guix pack'."
   (define (scope file)
     (string-append directory "/" file))
@@ -198,12 +202,20 @@ This is used to create the self-contained tarballs with 'guix pack'."
   ;; Make root's profile, which makes it a GC root.
   (mkdir-p* %root-profile)
   (symlink* profile
-            (string-append %root-profile "/guix-profile-1-link"))
+            (string-append %root-profile "/" profile-name "-1-link"))
-  (symlink* "guix-profile-1-link"
+  (symlink* (string-append profile-name "-1-link")
-            (string-append %root-profile "/guix-profile"))
+            (string-append %root-profile "/" profile-name))
 
-  (mkdir-p* "/root")
+  (match profile-name
-  (symlink* (string-append %root-profile "/guix-profile")
+    ("guix-profile"
-            "/root/.guix-profile"))
+     (mkdir-p* "/root")
+     (symlink* (string-append %root-profile "/guix-profile")
+               "/root/.guix-profile"))
+    ("current-guix"
+     (mkdir-p* "/root/.config/guix")
+     (symlink* (string-append %root-profile "/current-guix")
+               "/root/.config/guix/current"))
+    (_
+     #t)))
 
 ;;; install.scm ends here

gnu/local.mk

@@ -234,6 +234,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/imagemagick.scm			\
   %D%/packages/inklingreader.scm		\
   %D%/packages/inkscape.scm			\
+  %D%/packages/ipfs.scm			\
   %D%/packages/irc.scm  			\
   %D%/packages/iso-codes.scm			\
   %D%/packages/java.scm				\
@@ -940,7 +941,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/lvm2-static-link.patch			\
   %D%/packages/patches/lxsession-use-gapplication.patch         \
   %D%/packages/patches/lyx-2.2.3-fix-test.patch			\
-  %D%/packages/patches/mailutils-uninitialized-memory.patch	\
   %D%/packages/patches/make-glibc-compat.patch			\
   %D%/packages/patches/make-impure-dirs.patch			\
   %D%/packages/patches/mariadb-client-test-32bit.patch		\
@@ -953,6 +953,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/mcrypt-CVE-2012-4409.patch			\
   %D%/packages/patches/mcrypt-CVE-2012-4426.patch			\
   %D%/packages/patches/mcrypt-CVE-2012-4527.patch			\
+  %D%/packages/patches/meandmyshadow-define-paths-earlier.patch	\
   %D%/packages/patches/mesa-skip-disk-cache-test.patch		\
   %D%/packages/patches/meson-for-build-rpath.patch		\
   %D%/packages/patches/metabat-fix-compilation.patch		\
@@ -974,7 +975,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/mupen64plus-ui-console-notice.patch	\
   %D%/packages/patches/mupen64plus-video-z64-glew-correct-path.patch    \
   %D%/packages/patches/mutt-store-references.patch		\
-  %D%/packages/patches/myrepos-CVE-2018-7032.patch		\
   %D%/packages/patches/m4-gnulib-libio.patch			\
   %D%/packages/patches/net-tools-bitrot.patch			\
   %D%/packages/patches/netcdf-date-time.patch			\
@@ -1129,6 +1129,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch \
   %D%/packages/patches/rust-bootstrap-stage0-test.patch		\
   %D%/packages/patches/rust-coresimd-doctest.patch		\
+  %D%/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch \
   %D%/packages/patches/rxvt-unicode-escape-sequences.patch	\
   %D%/packages/patches/scheme48-tests.patch			\
   %D%/packages/patches/scotch-test-threading.patch		\
@@ -1167,6 +1168,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/teeworlds-use-latest-wavpack.patch	\
   %D%/packages/patches/texinfo-perl-compat.patch		\
   %D%/packages/patches/texinfo-5-perl-compat.patch		\
+  %D%/packages/patches/telegram-purple-adjust-test.patch	\
   %D%/packages/patches/texi2html-document-encoding.patch	\
   %D%/packages/patches/texi2html-i18n.patch			\
   %D%/packages/patches/thefuck-test-environ.patch		\
@@ -1231,7 +1233,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/wpa-supplicant-krack-followups.patch	\
   %D%/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch	\
   %D%/packages/patches/x265-detect512-all-arches.patch		\
-  %D%/packages/patches/xapian-revert-5489fb2f8.patch		\
   %D%/packages/patches/xboing-CVE-2004-0149.patch		\
   %D%/packages/patches/xf86-video-ark-remove-mibstore.patch	\
   %D%/packages/patches/xf86-video-geode-glibc-2.20.patch	\
@@ -1247,7 +1248,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/xinetd-fix-fd-leak.patch			\
   %D%/packages/patches/xinetd-CVE-2013-4342.patch		\
   %D%/packages/patches/xmodmap-asprintf.patch 			\
-  %D%/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch \
   %D%/packages/patches/zathura-plugindir-environment-variable.patch
 
 MISC_DISTRO_FILES =				\

gnu/packages/audio.scm

@@ -3108,7 +3108,7 @@ with support for HD extensions.")
 (define-public bs1770gain
   (package
     (name "bs1770gain")
-    (version "0.5.0")
+    (version "0.5.1")
     (source
      (origin
        (method url-fetch)
@@ -3116,7 +3116,7 @@ with support for HD extensions.")
                            version "/bs1770gain-" version ".tar.gz"))
        (sha256
         (base32
-         "0vd7320k7s2zcn2vganclxbr1vav18ghld27rcwskvcc3dm8prii"))))
+         "0r4fbajgfmnwgl63hcm56f1j8m5f135q6j5jkzdvrrhpcj39yx06"))))
     (build-system gnu-build-system)
     (inputs `(("ffmpeg" ,ffmpeg)
               ("sox" ,sox)))

gnu/packages/bioconductor.scm

@@ -363,13 +363,13 @@ expressed genes in DNA microarray experiments.")
 (define-public r-graph
   (package
     (name "r-graph")
-    (version "1.58.0")
+    (version "1.58.2")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "graph" version))
               (sha256
                (base32
-                "1zx445lk36g1s6i5dbhhf00nzzazyklfjxxjfax6q8hnhvgm9759"))))
+                "07smbb3c30pr5r425g181xsg0rs5jx6x2q6xpwb5dqgicxrz30ga"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-biocgenerics" ,r-biocgenerics)))

gnu/packages/bioinformatics.scm

@@ -6292,14 +6292,14 @@ information as possible.")
 (define-public r-vegan
   (package
     (name "r-vegan")
-    (version "2.5-2")
+    (version "2.5-3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "vegan" version))
        (sha256
         (base32
-         "13pyqvlpz64qibi8k5d109v7q09j06mbv6ndix3n4cn21mjx391c"))))
+         "023xznh0iy0496icpchadmp7a3rk3nj9s48fvwlvp3dssw58yp3c"))))
     (build-system r-build-system)
     (native-inputs
      `(("gfortran" ,gfortran)))
@@ -7309,13 +7309,13 @@ utilities for sequence data management under the ACNUC system.")
 (define-public r-iranges
   (package
     (name "r-iranges")
-    (version "2.14.11")
+    (version "2.14.12")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "IRanges" version))
               (sha256
                (base32
-                "0wz63hysspyjihqadg91dbvllc5a61zzjrsz0b9498lihqc6m1la"))))
+                "1ar8sqqgjdy00dbgrxnacqy6gwir5xax76yf0vjxi2vj2skqb0kn"))))
     (properties
      `((upstream-name . "IRanges")))
     (build-system r-build-system)
@@ -7338,7 +7338,7 @@ possible.")
 (define-public r-genomeinfodbdata
   (package
     (name "r-genomeinfodbdata")
-    (version "0.99.1")
+    (version "1.1.0")
     (source (origin
               (method url-fetch)
               ;; We cannot use bioconductor-uri here because this tarball is
@@ -7348,7 +7348,7 @@ possible.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0hipipvyvrh75n68hsjg35sxbcfzrghzxv547vnkk2f8ya99g01r"))))
+                "0k1hsjx6n2i1sf14hyrgdhxqxm5mxk0bgnivhiax944whcicmzbf"))))
     (properties
      `((upstream-name . "GenomeInfoDbData")))
     (build-system r-build-system)
@@ -7389,13 +7389,13 @@ names in their natural, rather than lexicographic, order.")
 (define-public r-edger
   (package
     (name "r-edger")
-    (version "3.22.3")
+    (version "3.22.5")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "edgeR" version))
               (sha256
                (base32
-                "0w3jv29n0kkaiig8dbbdqy2dkng8xfaihch82mj9ci5hphrx3nng"))))
+                "0pkcdkh8mwdaca6xa8a7vwdfh46r03rkxwkrf17pwwd4557j7lj7"))))
     (properties `((upstream-name . "edgeR")))
     (build-system r-build-system)
     (propagated-inputs
@@ -7455,13 +7455,13 @@ coding changes and predict coding outcomes.")
 (define-public r-limma
   (package
     (name "r-limma")
-    (version "3.36.3")
+    (version "3.36.5")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "limma" version))
               (sha256
                (base32
-                "0iiifszr6hcqih6kszdsbkx3gacfg3d7v8hdx0lbjqnjqgqz7pwk"))))
+                "0d13w95si7l6fqfsdf6k50v4l573hhfva6mvd94v26iba24p2f6x"))))
     (build-system r-build-system)
     (home-page "http://bioinf.wehi.edu.au/limma")
     (synopsis "Package for linear models for microarray and RNA-seq data")
@@ -7510,13 +7510,13 @@ different technologies, including microarrays, RNA-seq, and quantitative PCR.")
 (define-public r-genomicranges
   (package
     (name "r-genomicranges")
-    (version "1.32.6")
+    (version "1.32.7")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "GenomicRanges" version))
               (sha256
                (base32
-                "0p58yk2i5gqvjlkx548mnrr49wvs0xfcl06l9rqj2hi6hkkbvnp3"))))
+                "1lh54asabrmk982636avpp1kcfzakwxi31cbj3jc8mkhar1mkyrx"))))
     (properties
      `((upstream-name . "GenomicRanges")))
     (build-system r-build-system)
@@ -7716,13 +7716,13 @@ files.")
 (define-public r-delayedarray
   (package
     (name "r-delayedarray")
-    (version "0.6.5")
+    (version "0.6.6")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "DelayedArray" version))
               (sha256
                (base32
-                "10b03zrnvz5isfh4z55hasya2m71lrfx10l5lm2sdmqs0gwkanrd"))))
+                "0rkp0mfsq3wfnib389dh3i44ab0wiz8skkjcv4596dwgq50jqpf2"))))
     (properties
      `((upstream-name . "DelayedArray")))
     (build-system r-build-system)
@@ -7858,13 +7858,13 @@ as well as query and modify the browser state, such as the current viewport.")
 (define-public r-genomicfeatures
   (package
     (name "r-genomicfeatures")
-    (version "1.32.2")
+    (version "1.32.3")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "GenomicFeatures" version))
               (sha256
                (base32
-                "0kfyyg1ib8fkq2hxraal10z4bx3rg8figdskw4yhn1mbh6l42q5f"))))
+                "06prj5iih3ywsgq00lgfl29p3f8j23a0kqqhzhqcgjrrwsp94588"))))
     (properties
      `((upstream-name . "GenomicFeatures")))
     (build-system r-build-system)
@@ -7899,7 +7899,7 @@ extracting the desired features in a convenient format.")
 (define-public r-go-db
   (package
     (name "r-go-db")
-    (version "3.5.0")
+    (version "3.6.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://www.bioconductor.org/packages/"
@@ -7907,7 +7907,7 @@ extracting the desired features in a convenient format.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "02d1mn1al3q7qvhx1ylrr3ar4w4iw0qyi5d89v2336rzwk9maq35"))))
+                "0fi2qywr9apg5lwfqfq9qq6bgrnv4rdhxx25656qn4bsy62i838j"))))
     (properties
      `((upstream-name . "GO.db")))
     (build-system r-build-system)
@@ -8777,14 +8777,14 @@ in SNV base substitution data.")
 (define-public r-wgcna
   (package
     (name "r-wgcna")
-    (version "1.63")
+    (version "1.66")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "WGCNA" version))
        (sha256
         (base32
-         "1225dqm68bynkmklnsxdqdd3zqrpzbvqwyly8ibxmk75z33xz309"))))
+         "0rhnyhzfn93yp24jz9v6dzrmyizwzdw070a7idm0k33w1cm8sjqv"))))
     (properties `((upstream-name . "WGCNA")))
     (build-system r-build-system)
     (propagated-inputs
@@ -9359,13 +9359,13 @@ number detection tools.")
 (define-public r-methylkit
   (package
     (name "r-methylkit")
-    (version "1.6.1")
+    (version "1.6.3")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "methylKit" version))
               (sha256
                (base32
-                "1hr2czi5ybdf7hdmqsv39d17f3mvmw94wa38bc14zzm9mgy9gfy7"))))
+                "1nla74d2sjs51yyvvxf038a03mhw9appvjzj60vr2vd3p5lhqn9k"))))
     (properties `((upstream-name . "methylKit")))
     (build-system r-build-system)
     (propagated-inputs
@@ -9733,14 +9733,14 @@ structure (pcaRes) to provide a common interface to the PCA results.")
 (define-public r-msnbase
   (package
     (name "r-msnbase")
-    (version "2.6.3")
+    (version "2.6.4")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "MSnbase" version))
        (sha256
         (base32
-         "15jhqg02ypmznc0wxksw56yij02csy678vqy531fdv86fsmypwa0"))))
+         "1civd8b1rd5n6ys52dazw5m1yy2wq7049dbbyhzv7pjpa1m2x1rm"))))
     (properties `((upstream-name . "MSnbase")))
     (build-system r-build-system)
     (propagated-inputs
@@ -10063,14 +10063,14 @@ microarrays or GRanges for sequencing data.")
 (define-public r-keggrest
   (package
     (name "r-keggrest")
-    (version "1.20.1")
+    (version "1.20.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "KEGGREST" version))
        (sha256
         (base32
-         "1ss0xd5570x570v01r6lp64rr1apjrzp0j62520pvm3g8knjhfvs"))))
+         "0whmmbkq8bmc3ll20l4cv6hhxjgzbkrs97japljzg07ncn1fffsa"))))
     (properties `((upstream-name . "KEGGREST")))
     (build-system r-build-system)
     (propagated-inputs
@@ -10378,14 +10378,14 @@ interval to data view, mismatch pileup, and several splicing summaries.")
 (define-public r-gprofiler
   (package
     (name "r-gprofiler")
-    (version "0.6.6")
+    (version "0.6.7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gProfileR" version))
        (sha256
         (base32
-         "1n6cj12j102b4x9vhyl4dljp1i0r43p23cnhqbx4als2xfxdlqgi"))))
+         "12nwidbnqmnfy5dnqga26byslvdnkrpz2fi19qfcby6xx0wbndk7"))))
     (properties `((upstream-name . "gProfileR")))
     (build-system r-build-system)
     (propagated-inputs

gnu/packages/c.scm

@@ -178,15 +178,15 @@ compiler while still keeping it small, simple, fast and understandable.")
 (define-public libbytesize
   (package
     (name "libbytesize")
-    (version "1.3")
+    (version "1.4")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "https://github.com/storaged-project/libbytesize/releases/download/1.3/libbytesize-"
+                    "https://github.com/storaged-project/libbytesize/releases/"
-                    version ".tar.gz"))
+                    "download/" version "/libbytesize-" version ".tar.gz"))
               (sha256
                (base32
-                "1l7mxm2vq2h6137fyfa46v9r4lydp9dvmsixkd64xr3ylqk1g6fi"))))
+                "0bbqzln1nhjxl71aydq9k4jg3hvki9lqsb4w10s1i27jgibxqkdv"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("gettext" ,gettext-minimal)

gnu/packages/calcurse.scm

@@ -34,7 +34,7 @@
     (source
      (origin
       (method url-fetch)
-      (uri (string-append "http://calcurse.org/files/calcurse-"
+      (uri (string-append "https://calcurse.org/files/calcurse-"
                           version ".tar.gz"))
       (sha256
        (base32
@@ -57,7 +57,7 @@
                       (setenv "TZDIR"   ;for test/ical-007.sh
                               (string-append (assoc-ref inputs "tzdata")
                                              "/share/zoneinfo")))))))
-    (home-page "http://www.calcurse.org")
+    (home-page "https://www.calcurse.org")
     (synopsis "Text-based calendar and scheduling")
     (description
      "Calcurse is a text-based calendar and scheduling application.  It helps

gnu/packages/check.scm

@@ -293,13 +293,13 @@ format.")
 (define-public cppcheck
   (package
     (name "cppcheck")
-    (version "1.84")
+    (version "1.85")
     (source (origin
       (method url-fetch)
       (uri (string-append "https://github.com/danmar/cppcheck/archive/"
                           version ".tar.gz"))
       (sha256
-       (base32 "1ibz07dgs1dpfb8bmjh3qsma37wl5p6s6b4qlv5ccpshj4yjk9ma"))
+       (base32 "18qlddf1i9bk5nnvy1v2nfxjd46y8wvp3rqz2hrfxjxsyvrfq5yw"))
       (file-name (string-append name "-" version ".tar.gz"))))
     (build-system cmake-build-system)
     (home-page "http://cppcheck.sourceforge.net")

gnu/packages/code.scm

@@ -211,16 +211,16 @@ COCOMO model or user-provided parameters.")
 (define-public cloc
   (package
     (name "cloc")
-    (version "1.78")
+    (version "1.80")
     (source
      (origin
        (method url-fetch)
        (uri (string-append
-             "https://github.com/AlDanial/cloc/releases/download/" version
+             "https://github.com/AlDanial/cloc/releases/download/v" version
              "/cloc-" version ".tar.gz"))
        (sha256
         (base32
-         "1j9lwy9xf43kpv1csqdxzch6y1hnsv881ddqd357f8v58dhr4s68"))))
+         "0rqxnaskg5b736asyzfda1113zvpkajyqjf49vl9wgzf1r9m6bq8"))))
     (build-system gnu-build-system)
     (inputs
      `(("coreutils" ,coreutils)
@@ -231,8 +231,8 @@ COCOMO model or user-provided parameters.")
        ("perl-regexp-common" ,perl-regexp-common)))
     (arguments
      `(#:phases (modify-phases %standard-phases
-                  (delete 'configure)
+                  (delete 'configure)   ; nothing to configure
-                  (delete 'build)
+                  (delete 'build)       ; nothing to build
                   (replace 'install
                     (lambda* (#:key inputs outputs #:allow-other-keys)
                       (let* ((out (assoc-ref outputs "out")))

gnu/packages/compression.scm

@@ -694,13 +694,13 @@ sfArk file format to the uncompressed sf2 format.")
   (package
     (name "libmspack")
     (home-page "https://cabextract.org.uk/libmspack/")
-    (version "0.7.1")
+    (version "0.8")
     (source
      (origin
       (method url-fetch)
       (uri (string-append home-page name "-" version "alpha.tar.gz"))
       (sha256
-       (base32 "0zn4vwzk5ankgd0l88cipan19pzbzv0sm3fba17lvqwka3dp1acp"))))
+       (base32 "1byx98jajv927f0a7np0hvs8lxzccny6pj8vrrgmldv1jlp7jcq5"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--disable-static")))
@@ -1752,14 +1752,14 @@ or junctions, and always follows hard links.")
 (define-public zstd
   (package
     (name "zstd")
-    (version "1.3.6")
+    (version "1.3.7")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://github.com/facebook/zstd/releases/download/"
                            "v" version "/zstd-" version ".tar.gz"))
        (sha256
-        (base32 "1525b31jmbiczjj1n58nckdzky4cdnbwcsil3zgy4cx03v0a0cp8"))))
+        (base32 "0gapsdzqfsfqqddzv22592iwa0008xjyi15f06pfv9hcvwvg4xrj"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases

gnu/packages/cups.scm

@@ -382,14 +382,14 @@ device-specific programs to convert and print many types of files.")
 (define-public hplip
   (package
     (name "hplip")
-    (version "3.18.6")
+    (version "3.18.9")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/hplip/hplip/" version
                                   "/hplip-" version ".tar.gz"))
               (sha256
                (base32
-                "0zbv6cp9n3xypf2fg4j6fpz8zkvl0z08lyc1vq1gd04ln1l3xkqf"))
+                "0g3q5mm2crjyc1z4z6gv4lam6sc5d3diz704djrnpqadk4q3h290"))
               (modules '((guix build utils)))
               (snippet
                ;; Fix type mismatch.
@@ -398,7 +398,7 @@ device-specific programs to convert and print many types of files.")
                     (("boolean") "bool"))
                   #t))))
     (build-system gnu-build-system)
-    (home-page "http://hplipopensource.com/")
+    (home-page "https://developers.hp.com/hp-linux-imaging-and-printing")
     (synopsis "HP printer drivers")
     (description
      "Hewlett-Packard printer drivers and PostScript Printer Descriptions
@@ -414,6 +414,8 @@ device-specific programs to convert and print many types of files.")
        `("--disable-network-build"
          ,(string-append "--prefix=" (assoc-ref %outputs "out"))
          ,(string-append "--sysconfdir=" (assoc-ref %outputs "out") "/etc")
+         ,(string-append "LDFLAGS=-Wl,-rpath="
+                         (assoc-ref %outputs "out") "/lib")
          ;; Disable until mime.types merging works (FIXME).
          "--disable-fax-build"
          "--enable-hpcups-install"

gnu/packages/curl.scm

@@ -51,6 +51,7 @@
   (package
    (name "curl")
    (version "7.61.1")
+   (replacement curl-7.62.0)
    (source (origin
             (method url-fetch)
             (uri (string-append "https://curl.haxx.se/download/curl-"
@@ -141,6 +142,19 @@ tunneling, and so on.")
                                   "See COPYING in the distribution."))
    (home-page "https://curl.haxx.se/")))
 
+(define-public curl-7.62.0
+  (package
+    (inherit curl)
+    (version "7.62.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "https://curl.haxx.se/download/curl-"
+                            version ".tar.xz"))
+        (sha256
+         (base32
+          "1hbm29r3pirhn4gkcnd94ylc4jzgn3v3v7qbay9awxg7bwx69dfs"))))))
+
 (define-public kurly
   (package
     (name "kurly")

gnu/packages/databases.scm

@@ -503,10 +503,9 @@ applications.")
                #t))
            (replace 'build
              (lambda _
-               (zero? (apply system*
+               (apply invoke `("scons"
-                             `("scons"
                                ,@common-options
-                               "mongod" "mongo" "mongos")))))
+                               "mongod" "mongo" "mongos"))))
            (replace 'check
              (lambda* (#:key tests? inputs #:allow-other-keys)
                (setenv "TZDIR"
@@ -1227,6 +1226,18 @@ is in the public domain.")
        ((#:configure-flags flags)
         `(cons "--enable-fts5" ,flags))))))
 
+;; This is used by Qt.
+(define-public sqlite-with-column-metadata
+  (package (inherit sqlite)
+    (name "sqlite-with-column-metadata")
+    (arguments
+     (substitute-keyword-arguments (package-arguments sqlite)
+       ((#:configure-flags flags)
+        `(list (string-append "CFLAGS=-O2 -DSQLITE_SECURE_DELETE "
+                              "-DSQLITE_ENABLE_UNLOCK_NOTIFY "
+                              "-DSQLITE_ENABLE_DBSTAT_VTAB "
+                              "-DSQLITE_ENABLE_COLUMN_METADATA")))))))
+
 (define-public tdb
   (package
     (name "tdb")

gnu/packages/debian.scm

@@ -33,15 +33,17 @@
 (define-public debian-archive-keyring
   (package
     (name "debian-archive-keyring")
-    (version "2017.7")
+    (version "2018.1")
     (source
       (origin
-        (method url-fetch)
+        (method git-fetch)
-        (uri (string-append "mirror://debian/pool/main/d/" name "/"
+        (uri (git-reference
-                            name "_" version ".tar.xz"))
+              (url "https://salsa.debian.org/release-team/debian-archive-keyring.git")
+              (commit version)))
+        (file-name (git-file-name name version))
         (sha256
          (base32
-          "1pdwgipfi0y4svhxlw8arhq792f1g3vlmw4raphizy7sa65vd4ca"))))
+          "136vr5dj7w0dz563qdghsndcfcqm2m8d4j1dyiq9dzx5vd0rcpcw"))))
     (build-system gnu-build-system)
     (arguments
      '(#:test-target "verify-results"
@@ -116,7 +118,7 @@ contains the archive keys used for that.")
 (define-public debootstrap
   (package
     (name "debootstrap")
-    (version "1.0.106")
+    (version "1.0.109")
     (source
       (origin
         (method git-fetch)
@@ -126,7 +128,7 @@ contains the archive keys used for that.")
         (file-name (git-file-name name version))
         (sha256
          (base32
-          "1fm5bgllcwgwizrqi4sn8p4fpbzhbzgwprrfppfq9hqdzbmlfmnv"))))
+          "0bjqlyg605lnsjcn3wjplc6jl75nx7c6miyac2qsahi484rylg5g"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases

gnu/packages/dictionaries.scm

@@ -222,7 +222,7 @@ It comes with a German-English dictionary with approximately 270,000 entries.")
         (base32
          "11byjs3ggdhia5f4vyfqfvbbczsfqimll98h98g7hlsrm7vrifb0"))))
     (build-system python-build-system)
-    (home-page "https://www.dicollecte.org")
+    (home-page "https://grammalecte.net")
     (synopsis  "French spelling and grammar checker")
     (description "Grammalecte is a grammar checker dedicated to the French
 language, derived from Lightproof.

gnu/packages/dns.scm

@@ -65,7 +65,7 @@
 (define-public dnsmasq
   (package
     (name "dnsmasq")
-    (version "2.79")
+    (version "2.80")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -73,7 +73,7 @@
                     version ".tar.xz"))
               (sha256
                (base32
-                "07w6cw706yyahwvbvslhkrbjf2ynv567cgy9pal8bz8lrbsp9bbq"))))
+                "1fv3g8vikj3sn37x1j6qsywn09w1jipvlv34j3q5qrljbrwa5ayd"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -363,7 +363,7 @@ to result in system-wide compromise.")
 (define-public unbound
   (package
     (name "unbound")
-    (version "1.8.0")
+    (version "1.8.1")
     (source
      (origin
        (method url-fetch)
@@ -371,7 +371,7 @@ to result in system-wide compromise.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "0gxqc4ynd2g1a5dwaazqh9n8injh49a7dz0l9bbxqgv47dnrvxvq"))))
+         "0p9w6spar5dfi7fplxjcq4394wldabaws0ns30cqq6sxqfwv6qn3"))))
     (build-system gnu-build-system)
     (outputs '("out" "python"))
     (native-inputs

gnu/packages/electronics.scm

@@ -123,7 +123,7 @@ as simple logic analyzer and/or oscilloscope hardware.")
 (define-public libsigrok
   (package
     (name "libsigrok")
-    (version "0.5.0")
+    (version "0.5.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -131,19 +131,17 @@ as simple logic analyzer and/or oscilloscope hardware.")
                     version ".tar.gz"))
               (sha256
                (base32
-                "197kr5ip98lxn7rv10zs35d1w0j7265s0xvckx0mq2l8kdvqd32c"))))
+                "171b553dir5gn6w4f7n37waqk62nq2kf1jykx4ifjacdz5xdw3z4"))))
     (outputs '("out" "doc"))
     (arguments
-     `(#:tests? #f ; tests need usb access
+     `(#:tests? #f                      ; tests need USB access
        #:phases
        (modify-phases %standard-phases
          (add-before 'configure 'change-udev-group
            (lambda _
-             (let ((file "contrib/z60_libsigrok.rules"))
+             (substitute* (find-files "contrib" "\\.rules$")
-               (substitute* file
+               (("plugdev") "dialout"))
-                 (("plugdev") "dialout"))
+             #t))
-               (rename-file file "contrib/60-libsigrok.rules")
-               #t)))
          (add-after 'build 'build-doc
            (lambda _
              (invoke "doxygen")))
@@ -155,11 +153,12 @@ as simple logic analyzer and/or oscilloscope hardware.")
              #t))
          (add-after 'install-doc 'install-udev-rules
            (lambda* (#:key outputs #:allow-other-keys)
-             (install-file "contrib/60-libsigrok.rules"
+             (let* ((out   (assoc-ref outputs "out"))
-                           (string-append
+                    (rules (string-append out "/lib/udev/rules.d/")))
-                            (assoc-ref outputs "out")
+               (for-each (lambda (file)
-                            "/lib/udev/rules.d/"))
+                           (install-file file rules))
-             #t))
+                         (find-files "contrib" "\\.rules$"))
+               #t)))
          (add-after 'install-udev-rules 'install-fw
            (lambda* (#:key inputs outputs #:allow-other-keys)
              (let* ((fx2lafw (assoc-ref inputs "sigrok-firmware-fx2lafw"))
@@ -167,7 +166,6 @@ as simple logic analyzer and/or oscilloscope hardware.")
                     (dir-suffix "/share/sigrok-firmware/")
                     (input-dir (string-append fx2lafw dir-suffix))
                     (output-dir (string-append out dir-suffix)))
-               (mkdir-p output-dir)
                (for-each
                 (lambda (file)
                   (install-file file output-dir))
@@ -204,7 +202,7 @@ format support.")
 (define-public sigrok-cli
   (package
     (name "sigrok-cli")
-    (version "0.7.0")
+    (version "0.7.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -212,7 +210,7 @@ format support.")
                     version ".tar.gz"))
               (sha256
                (base32
-                "072ylscp0ppgii1k5j07hhv7dfmni4vyhxnsvxmgqgfyq9ldjsan"))))
+                "15vpn1psriadcbl6v9swwgws7dva85ld03yv6g1mgm27kx11697m"))))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (inputs
@@ -228,7 +226,7 @@ format support.")
 (define-public pulseview
   (package
     (name "pulseview")
-    (version "0.4.0")
+    (version "0.4.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -236,9 +234,20 @@ format support.")
                     version ".tar.gz"))
               (sha256
                (base32
-                "1f8f2342d5yam98mmcb8f9g2vslcwv486bmi4x45pxn68l82ky3q"))))
+                "0bvgmkgz37n2bi9niskpl05hf7rsj1lj972fbrgnlz25s4ywxrwy"))))
+    (build-system cmake-build-system)
     (arguments
-     `(#:configure-flags '("-DCMAKE_CXX_FLAGS=-fext-numeric-literals")))
+     `(#:configure-flags '("-DENABLE_TESTS=y")
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'install 'remove-empty-doc-directory
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out")))
+               (with-directory-excursion (string-append out "/share")
+                 ;; Use RMDIR to never risk silently deleting files.
+                 (rmdir "doc/pulseview")
+                 (rmdir "doc"))
+               #t))))))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (inputs
@@ -249,7 +258,6 @@ format support.")
        ("libsigrokdecode" ,libsigrokdecode)
        ("qtbase" ,qtbase)
        ("qtsvg" ,qtsvg)))
-    (build-system cmake-build-system)
     (home-page "https://www.sigrok.org/wiki/PulseView")
     (synopsis "Qt based logic analyzer, oscilloscope and MSO GUI for sigrok")
     (description "PulseView is a Qt based logic analyzer, oscilloscope and MSO GUI

gnu/packages/emacs.scm

@@ -956,14 +956,14 @@ provides an optional IDE-like error list.")
 (define-public emacs-emms
   (package
     (name "emacs-emms")
-    (version "5.0")
+    (version "5.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnu/emms/emms-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "08f9lj77jlk96grqgjsv63s2i8ywvp4wvnmgmhnslwyx2lsdxza3"))
+                "149ddczyx6x10zn4mn8g0rll1rwf4yciv8x6j0qdnlbwszblx2x6"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -2630,14 +2630,14 @@ source code using IPython.")
 (define-public emacs-debbugs
   (package
     (name "emacs-debbugs")
-    (version "0.15")
+    (version "0.16")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://elpa.gnu.org/packages/debbugs-"
                                   version ".tar"))
               (sha256
                (base32
-                "1x7jw2ldgkknyxg7x9fhnqkary691icnysmi3xw0g2fjrvllzhqw"))))
+                "0y3bq803c7820h15g66d1648skxfhlfa2v6vincj6xk5ssp44s9p"))))
     (build-system emacs-build-system)
     (arguments '(#:include '("\\.el$" "\\.wsdl$" "\\.info$")))
     (propagated-inputs
@@ -8200,7 +8200,7 @@ the format.")
 (define-public emacs-nov-el
   (package
     (name "emacs-nov-el")
-    (version "0.2.2")
+    (version "0.2.6")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -8209,7 +8209,7 @@ the format.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "03s0qjvwk1f7y3i4wh2p5y3z4hdv00adgz8za3vphzc0q8i1kjzb"))))
+                "188h5gzn1zf443g0b7q5bpmvvpr6ds5h8aci8vxc92py56rhyrvc"))))
     (build-system emacs-build-system)
     (arguments
      `(#:phases
@@ -11746,10 +11746,10 @@ file.")
   (deprecated-package "emacs-wgrep-helm" emacs-wgrep))
 
 (define-public emacs-mu4e-conversation
-  (let ((commit "223cc66e99c7665326e3d991d6d383cb0d7512bb"))
+  (let ((commit "54368a009474276247bdf39683e25ea68ae1f943"))
     (package
       (name "emacs-mu4e-conversation")
-      (version (git-version "20180722" "2" commit))
+      (version (git-version "20181105" "3" commit))
       (source
        (origin
          (method url-fetch)
@@ -11760,7 +11760,7 @@ file.")
          (file-name (string-append name "-" version "-checkout"))
          (sha256
           (base32
-           "1ivy7pihhma465hi25p1y45dyi8h52nsm2m0cvizj5sw36jw0n81"))))
+           "1zqnp1d3cxyvzsd76d5iw40lkif19k9svlbhqy6dvqiaqm0jbd15"))))
       (build-system emacs-build-system)
       (propagated-inputs
        `(("mu" ,mu)))
@@ -12012,7 +12012,7 @@ was called.")
 (define-public emacs-dired-du
   (package
     (name "emacs-dired-du")
-    (version "0.5")
+    (version "0.5.1")
     (source
      (origin
        (method url-fetch)
@@ -12021,7 +12021,7 @@ was called.")
              version ".tar"))
        (sha256
         (base32
-         "09yj37p2fa5f81fqrzwghjkyy2ydsf4rbkfwpn2yyvzd5nd97bpl"))))
+         "1091scnrjh0a4gja4z6jxic6ghy1yryv46qk9c76pmh50cpw6766"))))
     (build-system emacs-build-system)
     (home-page "http://elpa.gnu.org/packages/dired-du.html")
     (synopsis "Dired with recursive directory sizes")
@@ -12433,3 +12433,33 @@ correctly.")
       (synopsis "Color ANSI codes in the REPL of SLIME")
       (description "Color ANSI codes in the REPL of SLIME")
       (license license:gpl2+))))
+
+(define-public emacs-helm-slime
+  (let ((commit "9980925f3e5f6ac5a30369d2a544e82006a79c76"))
+    (package
+      (name "emacs-helm-slime")
+      (version (git-version "0.0.0" "1" commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/emacs-helm/helm-slime")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0xa07gpfkzwn522x9573mq5mfxvbawdgd0m93gqj6w5a14wk8zzh"))))
+      (build-system emacs-build-system)
+      (propagated-inputs
+       `(("emacs-helm" ,emacs-helm)
+         ("emacs-slime" ,emacs-slime)))
+      (home-page "https://github.com/emacs-helm/helm-slime")
+      (synopsis "Helm for SLIME, the Superior Lisp Interaction Mode for Emacs")
+      (description "Helm-SLIME defines a few new commands:
+
+@itemize
+@item helm-slime-complete: Select a symbol from the SLIME completion systems.
+@item helm-slime-list-connections: Yet another slime-list-connections with Helm.
+@item: helm-slime-apropos: Yet another slime-apropos with Helm.
+@item helm-slime-repl-history: Select an input from the SLIME REPL history and insert it.
+@end itemize\n")
+      (license license:gpl3+))))

gnu/packages/emulators.scm

@@ -117,8 +117,8 @@
 
 ;; Building from recent Git because the official 5.0 release no longer builds.
 (define-public dolphin-emu
-  (let ((commit "5f0d825f40b8aabe13eaef32d44ab667ff8e8c28")
+  (let ((commit "22ddd11573fd8d3e43a879804e7a64e50928435d")
-        (revision "3"))
+        (revision "4"))
     (package
       (name "dolphin-emu")
       (version (git-version "5.0" revision commit))
@@ -144,7 +144,7 @@
              #t))
          (sha256
           (base32
-           "0dh7mih16aif9ynbgcsn7n10f89g8d232i86xqfp2rijsdggcmzl"))))
+           "01l6r8spaslqc73m3y7hfb2jx5a4848vdkman6x6w2arpb8bywzl"))))
       (build-system cmake-build-system)
       (arguments
        '(#:tests? #f
@@ -153,7 +153,8 @@
            (add-before 'configure 'fixgcc7
              (lambda _
                (unsetenv "C_INCLUDE_PATH")
-               (unsetenv "CPLUS_INCLUDE_PATH")))
+               (unsetenv "CPLUS_INCLUDE_PATH")
+               #t))
            (add-before 'configure 'generate-fonts&hardcore-libvulkan-path
              (lambda* (#:key inputs outputs #:allow-other-keys)
                (let ((fontfile
@@ -195,7 +196,7 @@
          ("bluez" ,bluez)
          ("curl" ,curl)
          ("eudev" ,eudev)
-         ("ffmpeg" ,ffmpeg-3.4)
+         ("ffmpeg" ,ffmpeg)
          ("font-wqy-microhei" ,font-wqy-microhei)
          ("freetype" ,freetype)
          ("glew" ,glew)
@@ -1185,7 +1186,7 @@ play them on systems for which they were never designed!")
 (define-public mame
   (package
     (name "mame")
-    (version "0.202")
+    (version "0.203")
     (source
      (origin
        (method git-fetch)
@@ -1195,7 +1196,7 @@ play them on systems for which they were never designed!")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1v9gm124p65nbj678gfkcvwphp9qc15ky2p12ca6g3rllma94di5"))
+         "19ccqc00024fbjyk0k5d9xljhwq7wsrp7phwm2jmn0h77mgdj844"))
        (modules '((guix build utils)))
        (snippet
         ;; Remove bundled libraries.

gnu/packages/file-systems.scm

@@ -107,7 +107,7 @@ single file can be mounted.")
 (define-public disorderfs
   (package
     (name "disorderfs")
-    (version "0.5.4")
+    (version "0.5.5")
     (source
      (origin
        (method git-fetch)
@@ -117,7 +117,7 @@ single file can be mounted.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1mw4ix9h17ikki8p2rxdvzp87rcm1c7by5lvfn5gxlxr7hlj9f8g"))))
+         "18c32qcdzbxrzg7srnqnw1ls9yqqxyk9b996yxr6w2znw6x6n8v4"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -126,7 +126,7 @@ single file can be mounted.")
        ("attr" ,attr)))
     (arguments
      `(#:phases (modify-phases %standard-phases
-                  (delete 'configure))
+                  (delete 'configure))  ; no configure script
        #:make-flags (let ((out (assoc-ref %outputs "out")))
                       (list (string-append "PREFIX=" out)))
        #:test-target "test"

gnu/packages/fpga.scm

@@ -121,14 +121,15 @@ For synthesis, the compiler generates netlists in the desired format.")
     (name "yosys")
     (version "0.7")
     (source (origin
-              (method url-fetch)
+              (method git-fetch)
-              (uri
+              (uri (git-reference
-               (string-append "https://github.com/cliffordwolf/yosys/archive/"
+                    (url "https://github.com/cliffordwolf/yosys.git")
-                              name "-" version ".tar.gz"))
+                    (commit (string-append "yosys-" version))
+                    (recursive? #t))) ; for the ‘iverilog’ submodule
               (sha256
                 (base32
-                   "0vkfdn4phvkjqlnpqlr6q5f97bgjc3312vj5jf0vf85zqv88dy9x"))
+                   "1ssrpgw0j9qlm52g1hsbb9fsww4vnwi0l7zvvky7a8w7wamddky0"))
-              (file-name (string-append name "-" version "-checkout.tar.gz"))
+              (file-name (git-file-name name version))
               (modules '((guix build utils)))
               (snippet
                '(begin

gnu/packages/game-development.scm

@@ -440,18 +440,19 @@ clone.")
 (define-public sfml
   (package
     (name "sfml")
-    (version "2.5.0")
+    (version "2.5.1")
     (source (origin
-              (method url-fetch)
+              (method git-fetch)
               ;; Do not fetch the archives from
               ;; http://mirror0.sfml-dev.org/files/ because files there seem
               ;; to be changed in place.
-              (uri (string-append "https://github.com/SFML/SFML/archive/"
+              (uri (git-reference
-                                  version ".tar.gz"))
+                    (url "https://github.com/SFML/SFML.git")
-              (file-name (string-append name "-" version ".tar.gz"))
+                    (commit version)))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "1x3yvhdrln5b6h4g5r4mds76gq8zsxw6icxqpwqkmxsqcq5yviab"))
+                "0abr8ri2ssfy9ylpgjrr43m6rhrjy03wbj9bn509zqymifvq5pay"))
               (modules '((guix build utils)))
               (snippet
                '(begin

gnu/packages/games.scm

@@ -572,7 +572,7 @@ automata.  The following features are available:
 (define-public meandmyshadow
   (package
     (name "meandmyshadow")
-    (version "0.4.1")
+    (version "0.5")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/meandmyshadow/"
@@ -580,38 +580,24 @@ automata.  The following features are available:
                                   "-src.tar.gz"))
               (sha256
                (base32
-                "0wl5dc75qy001s6043cx0vr2l5y2qfv1cldqnwill9sfygqj9p95"))))
+                "1b6qf83vdfv8jwn2jq9ywmda2qn2f5914i7mwfy04m17wx593m3m"))
+              (patches (search-patches
+                        ;; This will not be needed in the next release.
+                        "meandmyshadow-define-paths-earlier.patch"))))
     (build-system cmake-build-system)
     (arguments
-     '(#:tests? #f ; there are no tests
+     `(#:tests? #f))                    ; there are no tests
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'set-sdl'paths
-           (lambda* (#:key inputs #:allow-other-keys)
-             (substitute* "cmake/Modules/FindSDL_gfx.cmake"
-               (("/usr/local/include/SDL")
-                (string-append (assoc-ref inputs "sdl")
-                               "/include/SDL")))
-             ;; Because SDL provides lib/libX11.so.6 we need to explicitly
-             ;; link with libX11, even though we're using the GL backend.
-             (substitute* "CMakeLists.txt"
-               (("\\$\\{X11_LIBRARIES\\}") "-lX11"))
-             #t)))))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (inputs
-     `(("sdl" ,(sdl-union (list sdl
+     `(("curl" ,curl)
-                                sdl-image
-                                sdl-gfx
-                                sdl-mixer
-                                sdl-ttf)))
-       ("libx11" ,libx11) ; needed by sdl's libX11
        ("libarchive" ,libarchive)
-       ("openssl" ,openssl)
+       ("lua" ,lua)
-       ("mesa" ,mesa)
+       ("sdl" ,(sdl-union (list sdl2
-       ("glu" ,glu)
+                                sdl2-image
-       ("curl" ,curl)))
+                                sdl2-mixer
-    (home-page "http://meandmyshadow.sourceforge.net/")
+                                sdl2-ttf)))))
+    (home-page "https://acmepjz.github.io/meandmyshadow/")
     (synopsis "Puzzle/platform game")
     (description "Me and My Shadow is a puzzle/platform game in which you try
 to reach the exit by solving puzzles.  Spikes, moving blocks, fragile blocks
@@ -3658,18 +3644,18 @@ throwing people around in pseudo-randomly generated buildings.")
 (define-public hyperrogue
   (package
     (name "hyperrogue")
-    (version "10.4t")
+    (version "10.4x")
     ;; When updating this package, be sure to update the "hyperrogue-data"
     ;; origin in native-inputs.
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "http://www.roguetemple.com/z/hyper/"
+                    "https://www.roguetemple.com/z/hyper/"
                     name (string-join (string-split version #\.) "")
                     "-src.tgz"))
               (sha256
                (base32
-                "0phqhmnzmc16a23qb4fkil0flzb86kibdckf1r35nc3l0k4193nn"))))
+                "0khk7xqdw4aiw1wnf1xrhmd7fklnzmpdavd7ix4mkm510dr5wklm"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; no check target
@@ -3741,12 +3727,12 @@ throwing people around in pseudo-randomly generated buildings.")
            (method url-fetch)
            (uri
             (string-append
-             "http://www.roguetemple.com/z/hyper/" name
+             "https://www.roguetemple.com/z/hyper/" name
              (string-join (string-split version #\.) "")
              "-win.zip"))
            (sha256
             (base32
-             "1xd9v8zzgi8m5ar8g4gy1xx5zqwidz3gn1knz0lwib3kbxx4drpg"))))
+             "1dv3kdv1n5imh3n9900b55rf0wwbjj7243lhsbk7lcjqsqxia39q"))))
        ("unzip" ,unzip)))
     (inputs
      `(("font-dejavu" ,font-dejavu)
@@ -3756,7 +3742,7 @@ throwing people around in pseudo-randomly generated buildings.")
                                       sdl-gfx
                                       sdl-mixer
                                       sdl-ttf)))))
-    (home-page "http://www.roguetemple.com/z/hyper/")
+    (home-page "https://www.roguetemple.com/z/hyper/")
     (synopsis "Non-euclidean graphical rogue-like game")
     (description
      "HyperRogue is a game in which the player collects treasures and fights
@@ -4018,7 +4004,7 @@ emerges from a sewer hole and pulls her below ground.")
 (define-public cdogs-sdl
   (package
     (name "cdogs-sdl")
-    (version "0.6.7")
+    (version "0.6.8")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -4027,7 +4013,7 @@ emerges from a sewer hole and pulls her below ground.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1frafzsj3f83xkmn4llr7g728c82lcqi424ini1hv3gv5zjgpa15"))))
+                "1v0adxm4xsix6r6j9hs7vmss7pxrb37azwfazr54p1dmfz4s6rp8"))))
     (build-system cmake-build-system)
     (arguments
      `(#:configure-flags
@@ -5553,7 +5539,8 @@ quotation from a collection of quotes.")
                      Comment=Xonotic glx~@
                      Exec=~a/bin/xonotic-glx~@
                      TryExec=~@*~a/bin/xonotic-glx~@
-                     Icon=~@
+                     Icon=xonotic~@
+                     Categories=Game~@
                      Type=Application~%"
                            output)))
                (with-output-to-file
@@ -5565,7 +5552,8 @@ quotation from a collection of quotes.")
                      Comment=Xonotic sdl~@
                      Exec=~a/bin/xonotic-sdl~@
                      TryExec=~@*~a/bin/xonotic-sdl~@
-                     Icon=~@
+                     Icon=xonotic~@
+                     Categories=Game~@
                      Type=Application~%"
                            output)))
                (with-output-to-file
@@ -5577,7 +5565,8 @@ quotation from a collection of quotes.")
                      Comment=Xonotic~@
                      Exec=~a/bin/xonotic-glx~@
                      TryExec=~@*~a/bin/xonotic~@
-                     Icon=~@
+                     Icon=xonotic~@
+                     Categories=Game~@
                      Type=Application~%"
                            output)))
                #t)))

gnu/packages/gnome.scm

@@ -2465,7 +2465,7 @@ libxml to ease remote use of the RESTful API.")
 (define-public libsoup
   (package
     (name "libsoup")
-    (version "2.64.0")
+    (version "2.64.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnome/sources/libsoup/"
@@ -2473,7 +2473,7 @@ libxml to ease remote use of the RESTful API.")
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "09z7g3spww3f84y8jmicdd6lqp360mbggpg5h1fq1v4p5ihcjnyr"))))
+                "1il6lyrmfi0hfh3ysw8w1qzc1rdz0igkb7dv6d8g5mmilnac3pbm"))))
     (build-system gnu-build-system)
     (outputs '("out" "doc"))
     (arguments
@@ -3631,7 +3631,7 @@ for application developers.")
 (define-public totem
   (package
     (name "totem")
-    (version "3.26.1")
+    (version "3.26.2")
     (source
      (origin
        (method url-fetch)
@@ -3640,7 +3640,7 @@ for application developers.")
                            name "-" version ".tar.xz"))
        (sha256
         (base32
-         "10n302fdp3lhkzbij5sbzmsnln738029xil6cnng2d4dxv4n1099"))
+         "1llyisls3pzf5bwkpxyfyxc2d3gpa09n5pjy7qsjdqrp3ya4k36g"))
        (patches (search-patches "totem-meson-easy-codec.patch"))))
     (build-system meson-build-system)
     (native-inputs

gnu/packages/gnuzilla.scm

@@ -510,15 +510,55 @@ security standards.")
         (mozilla-patch "icecat-bug-1478685.patch"         "098585dc86fc" "1b0x4qdh6isvffmibvc8ad8z62m3iky9q6jq0z6gyvn8q252cqal")
         (mozilla-patch "icecat-bug-1486080.patch"         "3f8d57d936ea" "0pz2c18wcgj44v0j8my9xbm90m4bsjcvzmavj569fi8bh6s6zz8p")
         (mozilla-patch "icecat-bug-1423278.patch"         "878ceaee5634" "0i47s5nvrx9vqbnj6s9y9f4ffww20p8nviqa6frg676y1188xlyl")
-        (mozilla-patch "icecat-bug-1442010.patch"         "87be1b98ec9a" "15f4l18c7hz9aqn89gg3dwmdidfwgn10dywgpzydm8mps45amx7j")
+        (mozilla-patch "icecat-CVE-2018-12390-pt01.patch" "87be1b98ec9a" "15f4l18c7hz9aqn89gg3dwmdidfwgn10dywgpzydm8mps45amx7j")
         (mozilla-patch "icecat-bug-1484559.patch"         "99e58b5307ce" "02fdgbliwzi2r2376wg6k1rky1isfka0smac4ii2cll01jhpfrn6")
-        (mozilla-patch "icecat-bug-1487098.patch"         "f25ce451a492" "18nzg39iyxza1686180qk9cc88l5j2hf1h35d62lrqmdgd9vcj33")
+        (mozilla-patch "icecat-CVE-2018-12390-pt02.patch" "f25ce451a492" "18nzg39iyxza1686180qk9cc88l5j2hf1h35d62lrqmdgd9vcj33")
-        (mozilla-patch "icecat-bug-1484905.patch"         "35c26bc231df" "0qh8d4z6y03h5xh7djci26a01l6zq667lg2k11f6zzg7z2j0h67x")
+        (mozilla-patch "icecat-CVE-2018-12390-pt03.patch" "35c26bc231df" "0qh8d4z6y03h5xh7djci26a01l6zq667lg2k11f6zzg7z2j0h67x")
         (mozilla-patch "icecat-bug-1488061.patch"         "050d0cfa8e3d" "05ql798ynbyz5pvyri4b95j4ixmgnny3zl7sd2ckfrrbm9mxh627")
         (mozilla-patch "icecat-bug-1434963-pt1.patch"     "1e6dad87efed" "1v00a6cmgswjk54041jyv1ib129fxshpzwk6mn6lr0v5hylk3bx9")
         (mozilla-patch "icecat-bug-1434963-pt2.patch"     "6558c46df9ea" "0vdy9dm9w5k1flhcfxwvvff0aa415b5mgmmq5r37i83686768xfb")
         (mozilla-patch "icecat-bug-1434963-pt3.patch"     "686fcfa8abd6" "0ihqr11aq4b0y7mx7bwn8yzn25mv3k2gdphm951mj1g85qg35ann")
-        (mozilla-patch "icecat-bug-1491132.patch"         "14120e0c74d6" "188c5fbhqqhmlk88p70l6d97skh7xy4jhqdby1ri3h9ix967515j")))
+        (mozilla-patch "icecat-bug-1491132.patch"         "14120e0c74d6" "188c5fbhqqhmlk88p70l6d97skh7xy4jhqdby1ri3h9ix967515j")
+        (mozilla-patch "icecat-bug-1492065.patch"         "ec4b5969c6ae" "18gfwn15kh0826vlg6lhrx3q4gv82i7v1k3y5jp72mvrjq154gy0")
+        (mozilla-patch "icecat-bug-1492064.patch"         "528cabdd9665" "0rdwpkfma24hn8namfb9saw4rgi9yyyj4af5h2ijrvadw6r8lyyn")
+        (mozilla-patch "icecat-bug-1489757.patch"         "46f19852aaa6" "0dga7mw847klm8x6il2fyzpjxqxxgx1q5cya658f1w66kxms1f29")
+        (mozilla-patch "icecat-bug-1492897.patch"         "c3a48066f383" "09n6sdck4jzzmznzrq0iixg5nsgrc5ibpdfsh3i7ppwad3fsy2m3")
+        (mozilla-patch "icecat-bug-1492915.patch"         "2d280e557331" "11x2n61pw5way9cg8lbrfl3lqvgfnbmcs1fwm78i06kmfwj0msk3")
+        (mozilla-patch "icecat-CVE-2018-12390-pt04.patch" "b80f94262165" "1hw43h4sgf77x323745rixyp6cci3fb6d3fnp33q82m4ssdb5623")
+        (mozilla-patch "icecat-bug-1492484.patch"         "1b3e6759cf3a" "1yn2cd2227ncg90c88ymdi5fyfs4hk335bd16vkkgljs0924yy0m")
+        (mozilla-patch "icecat-bug-1493590.patch"         "d9fe3b2025fc" "06783hj1aqms2f9a3mp18bk8hgijk3pz70bpccn173v4w0zlbbd4")
+        (mozilla-patch "icecat-CVE-2018-12390-pt05.patch" "20c59797e994" "1vxnhpirjsj040hrq9xmq2xhkpq4l5mnnzqy0nda92dfh47zvidj")
+        (mozilla-patch "icecat-CVE-2018-12390-pt06.patch" "1749661dfd28" "0g0sj2fgp3asj0yvxksnhrc59yxncn35bz5nzlvkpgdf7h06gscd")
+        (mozilla-patch "icecat-CVE-2018-12390-pt07.patch" "a511a9242406" "1hhfrvdmkccnhs4skbi06174x37rmvf4ic86xawyyzr67yga73b2")
+        (mozilla-patch "icecat-bug-1495404.patch"         "3232bb3b622f" "1pnaxf8r9h0wldjc4qgl7z3rk34fpz9h1vd3zmhswa6mvyln5jhg")
+        (mozilla-patch "icecat-bug-1465388.patch"         "a9577451dcc2" "0v29s0v3vv9vblkcachhh46qvwjcrmv2bkcdb7sj2asc503l0lqv")
+        (mozilla-patch "icecat-CVE-2018-12390-pt08.patch" "e965f6f6ed75" "0hh091854xj5j0x1r8pg46xmn00fqi5n212xhzbdpgyf96rsf513")
+        (mozilla-patch "icecat-bug-1445528.patch"         "8a503e022a29" "1y2ll3h0yz8sfdddjmk90qjfxcr1ffhw7a9ww3yw26gyhnbpg404")
+        (mozilla-patch "icecat-bug-1409570.patch"         "8d326641d1c0" "0w29s6dixi7b7q3nicshrp29n9sj5awssdln00yx664m8a8a8ihs")
+        (mozilla-patch "icecat-bug-1496094.patch"         "6cdd6d88eca9" "1ssqa4fy2xpbr63ph3av3hkpl92g4yszx402fq9d2xn9482q43dp")
+        (mozilla-patch "icecat-CVE-2018-12391.patch"      "0fa07c704ca4" "055xdyb3g2l4rj188235i579qnr50v19q36jjpliws9nik129iqy")
+        (mozilla-patch "icecat-bug-1462162.patch"         "739e898cb7c8" "17m9y0pskmqx15dkgkw4k93njph14mpsf37wb1azwkq3xx7s0fhx")
+        (mozilla-patch "icecat-bug-1492764.patch"         "16310ab35452" "1kq5r3w9i4n6q9msmw2qsqa0jd4qw1mjlyyz8aq14fwlbkhvv199")
+        (mozilla-patch "icecat-CVE-2018-12390-pt09.patch" "9b669d047d55" "063ig49gx9468nvc9w8259j819qfdjvq0sbbz8n4kj5r6hcxjc5l")
+        (mozilla-patch "icecat-CVE-2018-12390-pt10.patch" "9d51e65c797a" "0m23cq9zl22w80dvx5rlgpbam1l3d6v56h7g9wzamzl21bwxq9fv")
+        (mozilla-patch "icecat-CVE-2018-12390-pt11.patch" "efc0596dd381" "1alvbb6wvawxxh6isisk9c40vhdiv59fy0af0n10yn1dgy8ffv5i")
+        (mozilla-patch "icecat-CVE-2018-12393.patch"      "c4fb48bb5d28" "09izww9dsg9n8cish8f3y7phxibsnd12bfkcxd7rzcdhg10nr4pl")
+        (mozilla-patch "icecat-CVE-2018-12390-pt12.patch" "b3359becd7b1" "188byxmbgrvrid2fcz34w5xdvaw571frxx1c6nqaa9k03iljdzjr")
+        (mozilla-patch "icecat-CVE-2018-12390-pt13.patch" "791c8ecf252d" "02h37594aba0pklxm3g7w1wv8vz9xmcf30fd0az8pfaccsklmx74")
+        (mozilla-patch "icecat-bug-1494328.patch"         "333276fac37c" "0qyq42jl0al63m6pwj9gva7nj82l76szzbj7sklsygx0a9mqs13z")
+        (mozilla-patch "icecat-CVE-2018-12397.patch"      "cb73374a0e4e" "0x2s1nwgwdag9df5hkwzvjj0qznp5c3d6w6y63rn2y287jn9m3vl")
+        (mozilla-patch "icecat-CVE-2018-12392.patch"      "f6bb138ad0ab" "0f0z9dsyw2a11p4p31mdyic571153jpfgy2q04i4v6dmmcz76pm3")
+        (mozilla-patch "icecat-CVE-2018-12396.patch"      "f27145bd5502" "0vznmlm1fbl3ynax2zpi6xxzr9qp9b83afr3mv90jgrhlgpzdbcz")
+        (mozilla-patch "icecat-CVE-2018-12395-pt1.patch"  "133a99a8f3ca" "0im7m4jmc273mg9kih0i70hxsgzy04j6ydm9zmaz2933hkhdf4iw")
+        (mozilla-patch "icecat-CVE-2018-12395-pt2.patch"  "82176a4a9b14" "0g3yqx4854d4mx5a0ghb7p7saj6y5d5bm2lfhabvkwybcd477zmc")
+        (mozilla-patch "icecat-bug-1474265.patch"         "e8abd9a8ce6e" "1q2sv5h081rvnhsx6g1y8a43hwv6hsg0cr6zdcij58mkgzf6hyvd")
+        (mozilla-patch "icecat-bug-1492737-pt1.patch"     "eeb9060379dc" "1d2mf0x4rni7anvi0sgra4dg87fmc6g7zhizzl9jv2x8va27ycbp")
+        (mozilla-patch "icecat-bug-1492737-pt2.patch"     "99eae0d15092" "0f9j6cvhrbrrxa95p4pkcn285r9wmi9yj13nwj5x0gkglwx6idbk")
+        (mozilla-patch "icecat-CVE-2018-12389-pt1.patch"  "23b23e12c548" "0nsdycggki5rhh59yvmh41nf1ahjmgii89fx38jryprhspy3wg62")
+        (mozilla-patch "icecat-CVE-2018-12390-pt14.patch" "023133ff02ec" "1g22qxnmgiy8bgrn2nv6har6vpz4p2h5pdas8ib1yyz7p2ic8652")
+        (mozilla-patch "icecat-CVE-2018-12390-pt15.patch" "9461988ff462" "0yq2cr5grqskr0kz4nxcwmnywy9g0xyv6k6q44i490jcj8x2y1vw")
+        (mozilla-patch "icecat-CVE-2018-12390-pt16.patch" "09939be135d8" "1546xlk368v4hnjd3hf4w868i6m8r4wfd34qxz4wg1cdpr4m5mik")
+        (mozilla-patch "icecat-CVE-2018-12389-pt2.patch"  "ea9412b18ca8" "0fmdncrylbmjh0bcb6dmw1rq7zww8a0v9v9p1pxqfz0vbc6v9l5d")))
       (modules '((guix build utils)))
       (snippet
        '(begin

gnu/packages/gps.scm

@@ -147,7 +147,7 @@ between two other data points.")
 (define-public gama
   (package
     (name "gama")
-    (version "2.00")
+    (version "2.01")
     (source
       (origin
         (method url-fetch)
@@ -155,7 +155,7 @@ between two other data points.")
                             version ".tar.gz"))
         (sha256
          (base32
-          "1p51jlzr6qqqvzx0sq8j7fxqfij62c3pjcsb53vgx0jx0qdqyjba"))))
+          "1z3n5p69qglxq15l9g13cg78kyb0l6v8mbzqgc1fqkfbdk1mis0k"))))
     (build-system gnu-build-system)
     (arguments '(#:parallel-tests? #f)) ; race condition
     (native-inputs

gnu/packages/hardware.scm

@@ -22,11 +22,13 @@
   #:use-module (gnu packages glib)
   #:use-module (gnu packages libusb)
   #:use-module (gnu packages linux)
+  #:use-module (gnu packages ncurses)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages xdisorg)
   #:use-module (gnu packages xorg)
   #:use-module (guix build-system gnu)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages))
 
@@ -232,3 +234,45 @@ such as the Turbo Boost ratio and Thermal Design Power (@dfn{TDP}) limits.
 MSR addresses differ (greatly) between processors, and any such modification can
 be dangerous and may void your CPU or system board's warranty.")
     (license license:gpl2)))     ; cpuid.c is gpl2, {rd,wr}msr.c are gpl2+
+
+(define-public wavemon
+  (package
+    (name "wavemon")
+    (version "0.8.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/uoaerg/wavemon.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0rqpp7rhl9rlwnihsapaiy62v33h45fm3d0ia2nhdjw7fwkwcqvs"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags
+       (list "CC=gcc"
+             ;; Makefile.in (ab)uses $(datadir) as $(docdir). Set it to Guix's
+             ;; standard --docdir since it's only used as such.
+             (string-append "datadir=" (assoc-ref %outputs "out")
+                            "/share/doc/" ,name "-" ,version))
+       #:tests? #f))                    ; no tests
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (inputs
+     `(("libcap" ,libcap)
+       ("libnl" ,libnl)
+       ("ncurses" ,ncurses)))
+    (home-page "https://github.com/uoaerg/wavemon")
+    (synopsis "Wireless network device monitor")
+    (description
+     "Wavemon is a wireless device monitor with an interactive ncurses terminal
+interface.  It can display and plot signal and noise levels in real time.  It
+also reports packet statistics, device configuration, network parameters, and
+access points and other wireless clients of your wireless network hardware.
+
+Wavemon should work (with varying levels of detail and features) with any device
+supported by the Linux kernel.")
+    ;; Source file headers still say GPL2+, but the authorial intent
+    ;; (from COPYING and the F9 'about' screen) is clearly GPL3+.
+    (license license:gpl3+)))

gnu/packages/image-viewers.scm

@@ -60,7 +60,7 @@
 (define-public feh
   (package
     (name "feh")
-    (version "2.28")
+    (version "2.28.1")
     (home-page "https://feh.finalrewind.org/")
     (source (origin
               (method url-fetch)
@@ -68,7 +68,7 @@
                                   name "-" version ".tar.bz2"))
               (sha256
                (base32
-                "1nfka7w6pzj2bbwx8vydr2wwm7z8mrbqiy1xrq97c1g5bxy2vlhk"))))
+                "0wian0gnx0yfxf8x9b8wr57fjd6rnmi3y3xj83ni6x0xqrjnf1lp"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases (modify-phases %standard-phases (delete 'configure))

gnu/packages/image.scm

@@ -20,6 +20,7 @@
 ;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com>
 ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz>
 ;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2018 Pierre-Antoine Rouby <contact@parouby.fr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -43,6 +44,7 @@
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages boost)
   #:use-module (gnu packages check)
+  #:use-module (gnu packages curl)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages documentation)
   #:use-module (gnu packages fontutils)
@@ -1476,3 +1478,30 @@ Two other programs are included with Gifsicle: @command{gifview} is a
 lightweight animated-GIF viewer, and @command{gifdiff} compares two GIFs for
 identical visual appearance.")
    (license license:gpl2+)))
+
+(define-public jp2a
+  (package
+    (name "jp2a")
+    (version "1.0.7")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/cslarsen/jp2a/archive/v"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "0nahpjvrahixcfqqrjj2k4fscc8qs4hqnmj2qgjzsjj3z6xxh2g5"))
+       (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("libjpeg" ,libjpeg)
+       ("curl" ,curl)))
+    (native-inputs
+     `(("autoconf" ,autoconf)
+       ("automake" ,automake)
+       ("pkg-config" ,pkg-config)))
+    (home-page "https://csl.name/jp2a/")
+    (synopsis "Convert JPEG images to ASCII")
+    (description
+     "Jp2a is a small utility that converts JPEG images to ASCII.")
+    (license license:gpl2)))

gnu/packages/ipfs.scm

@@ -0,0 +1,212 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages ipfs)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix packages)
+  #:use-module (guix git-download)
+  #:use-module (guix build-system go)
+  #:use-module (gnu packages golang))
+
+(define-public go-github-com-ipfs-go-ipfs-cmdkit-files
+  (let ((commit
+          "386fcf8f18a185ec121676665fe2d9574496048d")
+        (revision "0"))
+    (package
+      (name "go-github-com-ipfs-go-ipfs-cmdkit-files")
+      (version (git-version "1.1.3" revision commit))
+      (source
+        (origin
+          (method git-fetch)
+          (uri (git-reference
+                 (url "https://github.com/ipfs/go-ipfs-cmdkit.git")
+                 (commit commit)))
+          (file-name (git-file-name name version))
+          (sha256
+            (base32
+              "0qk6fshgdmhp8dip2ksm13j6nywi41m9mn0czkvmw6b697z85l2r"))))
+      (build-system go-build-system)
+      (arguments
+       '(#:unpack-path "github.com/ipfs/go-ipfs-cmdkit"
+         #:import-path "github.com/ipfs/go-ipfs-cmdkit/files"))
+      (home-page "https://github.com/ipfs/go-ipfs-cmdkit")
+      (synopsis "Shared types, functions and values for go-ipfs")
+      (description "@command{cmdkit} offers some types, functions and values
+that are shared between @command{go-ipfs/commands} and its rewrite
+@command{go-ipfs-cmds}.")
+      (license license:expat))))
+
+(define-public go-github-com-ipfs-go-ipfs-api
+  (let ((commit
+          "dafc2a13a4389ac1a6c2786e34ab70a4f26d3a3f")
+        (revision "0"))
+    (package
+      (name "go-github-com-ipfs-go-ipfs-api")
+      (version (git-version "1.3.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/ipfs/go-ipfs-api.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "06kibnwb037sqynk99j07wm8alvxwx3bari9gdax4jv93396kycj"))))
+      (build-system go-build-system)
+      (arguments
+       '(#:import-path "github.com/ipfs/go-ipfs-api"
+         ;; TODO: Tests fail, might need network access.
+         #:tests? #f))
+      (native-inputs
+       `(("go-github-com-ipfs-go-ipfs-cmdkit-files" ,go-github-com-ipfs-go-ipfs-cmdkit-files)
+         ("go-github-com-libp2p-go-libp2p-metrics" ,go-github-com-libp2p-go-libp2p-metrics)
+         ("go-github-com-libp2p-go-flow-metrics" ,go-github-com-libp2p-go-flow-metrics)
+         ("go-github-com-libp2p-go-libp2p-peer" ,go-github-com-libp2p-go-libp2p-peer)
+         ("go-github-com-libp2p-go-libp2p-protocol" ,go-github-com-libp2p-go-libp2p-protocol)
+         ("go-github-com-libp2p-go-libp2p-crypto" ,go-github-com-libp2p-go-libp2p-crypto)
+         ("go-github-com-mitchellh-go-homedir" ,go-github-com-mitchellh-go-homedir)
+         ("go-github-com-multiformats-go-multiaddr" ,go-github-com-multiformats-go-multiaddr)
+         ("go-github-com-multiformats-go-multiaddr-net" ,go-github-com-multiformats-go-multiaddr-net)
+         ("go-github-com-btcsuite-btcd-btcec" ,go-github-com-btcsuite-btcd-btcec)
+         ("go-github-com-gogo-protobuf-proto" ,go-github-com-gogo-protobuf-proto)
+         ("go-github-com-minio-blake2b-simd" ,go-github-com-minio-blake2b-simd)
+         ("go-github-com-minio-sha256-simd" ,go-github-com-minio-sha256-simd)
+         ("go-github-com-mr-tron-base58" ,go-github-com-mr-tron-base58)
+         ("go-github-com-multiformats-go-multihash" ,go-github-com-multiformats-go-multihash)
+         ("go-golang-org-x-crypto-union" ,(go-golang-org-x-crypto-union))
+         ("go-github-com-spaolacci-murmur3" ,go-github-com-spaolacci-murmur3)
+         ("go-github-com-gxed-hashland-keccakpg" ,go-github-com-gxed-hashland-keccakpg)
+         ("go-github-com-whyrusleeping-tar-utils" ,go-github-com-whyrusleeping-tar-utils)
+         ("go-github-com-cheekybits-is" ,go-github-com-cheekybits-is)))
+      (home-page "https://github.com/ipfs/go-ipfs-api")
+      (synopsis "Unofficial Go interface to IPFS's HTTP API")
+      (description "An unofficial Go interface to IPFS's HTTP API")
+      (license license:expat))))
+
+(define-public gx
+  (let ((commit
+          "89338e509426d2895f20086685cf4c77d64cc5df")
+        (revision "0"))
+    (package
+      (name "gx")
+      (version (git-version "0.14.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/whyrusleeping/gx.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "08gh04jln8rxpq0j4fm4chjap162wp8cjwj9szbvj9c7123s42rd"))))
+      (build-system go-build-system)
+      (arguments
+       '(#:import-path "github.com/whyrusleeping/gx"))
+      (native-inputs
+       `(("go-github-com-blang-semver" ,go-github-com-blang-semver)
+         ("go-github-com-gxed-hashland-keccakpg" ,go-github-com-gxed-hashland-keccakpg)
+         ("go-github-com-ipfs-go-ipfs-api" ,go-github-com-ipfs-go-ipfs-api)
+         ("go-github-com-ipfs-go-ipfs-cmdkit-files" ,go-github-com-ipfs-go-ipfs-cmdkit-files)
+         ("go-github-com-libp2p-go-flow-metrics" ,go-github-com-libp2p-go-flow-metrics)
+         ("go-github-com-libp2p-go-libp2p-crypto" ,go-github-com-libp2p-go-libp2p-crypto)
+         ("go-github-com-libp2p-go-libp2p-metrics" ,go-github-com-libp2p-go-libp2p-metrics)
+         ("go-github-com-libp2p-go-libp2p-peer" ,go-github-com-libp2p-go-libp2p-peer)
+         ("go-github-com-libp2p-go-libp2p-protocol" ,go-github-com-libp2p-go-libp2p-protocol)
+         ("go-github-com-minio-blake2b-simd" ,go-github-com-minio-blake2b-simd)
+         ("go-github-com-minio-sha256-simd" ,go-github-com-minio-sha256-simd)
+         ("go-github-com-mitchellh-go-homedir" ,go-github-com-mitchellh-go-homedir)
+         ("go-github-com-mr-tron-base58" ,go-github-com-mr-tron-base58)
+         ("go-github-com-multiformats-go-multiaddr" ,go-github-com-multiformats-go-multiaddr)
+         ("go-github-com-multiformats-go-multiaddr-net" ,go-github-com-multiformats-go-multiaddr-net)
+         ("go-github-com-multiformats-go-multihash" ,go-github-com-multiformats-go-multihash)
+         ("go-github-com-spaolacci-murmur3" ,go-github-com-spaolacci-murmur3)
+         ("go-github-com-whyrusleeping-tar-utils" ,go-github-com-whyrusleeping-tar-utils)
+         ("go-golang-org-x-crypto-union" ,(go-golang-org-x-crypto-union))
+         ("go-github-com-btcsuite-btcd-btcec" ,go-github-com-btcsuite-btcd-btcec)
+         ("go-github-com-gogo-protobuf-proto" ,go-github-com-gogo-protobuf-proto)
+         ("go-github-com-sabhiram-go-gitignore" ,go-github-com-sabhiram-go-gitignore)
+         ("go-github-com-urfave-cli" ,go-github-com-urfave-cli)
+         ("go-github-com-whyrusleeping-json-filter" ,go-github-com-whyrusleeping-json-filter)
+         ("go-github-com-whyrusleeping-progmeter" ,go-github-com-whyrusleeping-progmeter)
+         ("go-github-com-whyrusleeping-stump" ,go-github-com-whyrusleeping-stump)))
+      (home-page "https://github.com/whyrusleeping/gx")
+      (synopsis "Package management tool using IPFS")
+      (description "@command{gx} is a packaging tool built around the
+distributed, content addressed filesystem IPFS.  It aims to be flexible,
+powerful and simple.")
+      (license license:expat))))
+
+(define-public go-github-com-whyrusleeping-gx-util
+  (package
+    (inherit gx)
+    (name "go-github-com-whyrusleeping-gx-util")
+    (arguments
+     '(#:unpack-path "github.com/whyrusleeping/gx"
+       #:import-path "github.com/whyrusleeping/gx/gxutil"))))
+
+(define-public gx-go
+  (package
+    (name "gx-go")
+    (version "1.9.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/whyrusleeping/gx-go")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0fdy4b3ymqw6hzvvjwq37mfrdmizc8lxm53axw93n3x6118na9jc"))))
+    (build-system go-build-system)
+    (arguments
+     '(#:import-path "github.com/whyrusleeping/gx-go"))
+    (native-inputs
+     `(("go-github-com-whyrusleeping-gx-util" ,go-github-com-whyrusleeping-gx-util)
+       ("go-github-com-kr-fs" ,go-github-com-kr-fs)
+       ("go-github-com-gxed-hashland-keccakpg" ,go-github-com-gxed-hashland-keccakpg)
+       ("go-github-com-ipfs-go-ipfs-api" ,go-github-com-ipfs-go-ipfs-api)
+       ("go-github-com-ipfs-go-ipfs-cmdkit-files" ,go-github-com-ipfs-go-ipfs-cmdkit-files)
+       ("go-github-com-libp2p-go-flow-metrics" ,go-github-com-libp2p-go-flow-metrics)
+       ("go-github-com-libp2p-go-libp2p-crypto" ,go-github-com-libp2p-go-libp2p-crypto)
+       ("go-github-com-libp2p-go-libp2p-metrics" ,go-github-com-libp2p-go-libp2p-metrics)
+       ("go-github-com-libp2p-go-libp2p-peer" ,go-github-com-libp2p-go-libp2p-peer)
+       ("go-github-com-libp2p-go-libp2p-protocol" ,go-github-com-libp2p-go-libp2p-protocol)
+       ("go-github-com-minio-blake2b-simd" ,go-github-com-minio-blake2b-simd)
+       ("go-github-com-minio-sha256-simd" ,go-github-com-minio-sha256-simd)
+       ("go-github-com-mitchellh-go-homedir" ,go-github-com-mitchellh-go-homedir)
+       ("go-github-com-mr-tron-base58" ,go-github-com-mr-tron-base58)
+       ("go-github-com-multiformats-go-multiaddr" ,go-github-com-multiformats-go-multiaddr)
+       ("go-github-com-multiformats-go-multiaddr-net" ,go-github-com-multiformats-go-multiaddr-net)
+       ("go-github-com-multiformats-go-multihash" ,go-github-com-multiformats-go-multihash)
+       ("go-github-com-spaolacci-murmur3" ,go-github-com-spaolacci-murmur3)
+       ("go-github-com-whyrusleeping-tar-utils" ,go-github-com-whyrusleeping-tar-utils)
+       ("go-golang-org-x-crypto-union" ,(go-golang-org-x-crypto-union))
+       ("go-github-com-btcsuite-btcd-btcec" ,go-github-com-btcsuite-btcd-btcec)
+       ("go-github-com-gogo-protobuf-proto" ,go-github-com-gogo-protobuf-proto)
+       ("go-github-com-sabhiram-go-gitignore" ,go-github-com-sabhiram-go-gitignore)
+       ("go-github-com-urfave-cli" ,go-github-com-urfave-cli)
+       ("go-github-com-whyrusleeping-progmeter" ,go-github-com-whyrusleeping-progmeter)
+       ("go-github-com-whyrusleeping-stump" ,go-github-com-whyrusleeping-stump)))
+    (home-page "https://github.com/whyrusleeping/gx-go")
+    (synopsis "Golang subtool for the @command{gx} package manager")
+    (description "A subtool for the @command{gx} package manager for packages
+written in Go.")
+    (license license:expat)))

gnu/packages/javascript.scm

@@ -2,7 +2,7 @@
 ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -413,7 +413,7 @@ external server.")
 (define-public mujs
   (package
     (name "mujs")
-    (version "1.0.4")
+    (version "1.0.5")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -422,11 +422,17 @@ external server.")
               (file-name (string-append name "-" version "-checkout"))
               (sha256
                (base32
-                "1ly0yybs66nk63517kg4dmdc7dbikhqqqf2r2kvccgzzvv6k0vs8"))))
+                "0pkv26jxwgv5ax0ylfmi4h96h79hj4gvr95218ns8wngnmgr1ny6"))))
     (build-system gnu-build-system)
     (arguments
-     '(#:phases (modify-phases %standard-phases
+     '(#:phases
-                  (delete 'configure))  ; no configure
+       (modify-phases %standard-phases
+         (delete 'configure)  ; no configure
+         (add-after 'install 'install-shared-library
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out")))
+               (install-file "build/release/libmujs.so"
+                             (string-append out "/lib"))))))
        #:make-flags (list (string-append "prefix=" (assoc-ref %outputs "out"))
                           (string-append "CC=gcc"))
        #:tests? #f))                    ; no tests

gnu/packages/julia.scm

@@ -357,10 +357,10 @@
            (method url-fetch)
            ;; No versioned URL, see <https://www.agner.org/optimize/> for updates.
            (uri "https://www.agner.org/optimize/objconv.zip")
-           (file-name "objconv-2018-08-15.zip")
+           (file-name "objconv-2018-10-07.zip")
            (sha256
             (base32
-             "09y4pwxfs6fl47cyingbf95i2rxx74wmycl9fd4ldcgvpx9bzdrx"))))
+             "0wp6ld9vk11f4nnkn56627zmlv9k5vafi99qa3yyn1pgcd61zcfs"))))
        ("dsfmt"
         ,(origin
            (method url-fetch)

gnu/packages/kde.scm

@@ -36,6 +36,7 @@
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages ghostscript)
   #:use-module (gnu packages gl)
+  #:use-module (gnu packages glib)
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages graphics)
   #:use-module (gnu packages image)
@@ -479,6 +480,45 @@ used in KDE development tools Kompare and KDevelop.")
     ;; source archive
     (license (list license:gpl2+ license:lgpl2.0+ license:bsd-3))))
 
+(define-public libkscreen
+  (package
+    (name "libkscreen")
+    (version "5.13.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://kde/stable/plasma/" version "/"
+                           name "-" version ".tar.xz"))
+       (sha256
+        (base32 "04719va15i66qn1xqx318v6risxhp8bfcnhxh9mqm5h9qx5c6c4k"))))
+    (build-system cmake-build-system)
+    (native-inputs
+     `(("extra-cmake-modules" ,extra-cmake-modules)
+       ;; For testing.
+       ("dbus" ,dbus)))
+    (inputs
+     `(("kwayland" ,kwayland)
+       ("libxrandr" ,libxrandr)
+       ("qtbase" ,qtbase)
+       ("qtx11extras" ,qtx11extras)))
+    (arguments
+     '(#:tests? #f         ; FIXME: 55% tests passed, 5 tests failed out of 11
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'pre-check
+           (lambda _
+             ;; For the missing '/etc/machine-id'.
+             (setenv "DBUS_FATAL_WARNINGS" "0")
+             ;; Run the tests offscreen.
+             (setenv "QT_QPA_PLATFORM" "offscreen")
+             #t)))))
+    (home-page "https://community.kde.org/Solid/Projects/ScreenManagement")
+    (synopsis "KDE's screen management software")
+    (description "KScreen is the new screen management software for KDE Plasma
+Workspaces which tries to be as magic and automatic as possible for users with
+basic needs and easy to configure for those who want special setups.")
+    (license license:gpl2+)))
+
 (define-public libksysguard
   (package
     (name "libksysguard")

gnu/packages/libreoffice.scm

@@ -740,6 +740,9 @@ Works word processor file format.")
       (sha256 (base32
                "08mg5kmkjrmqrd8j5rkzw9vdqlvibhb1ynp6bmfxnzq5rcq1l197"))))
    (build-system gnu-build-system)
+   (arguments
+    ;; A harmless 'sign-compare' error pops up on i686 so disable '-Werror'.
+    '(#:configure-flags '("--disable-werror")))
    (inputs
     `(("boost" ,boost)
       ("icu4c" ,icu4c)
@@ -1102,6 +1105,8 @@ converting QuarkXPress file format.  It supports versions 3.1 to 4.1.")
         (list
           "--enable-release-build"
           "--enable-verbose"
+          ;; Avoid using all cpu cores by default
+          (format #f "--with-parallelism=~d" (parallel-job-count))
           "--disable-fetch-external" ; disable downloads
           "--with-system-libs" ; enable all --with-system-* flags
           (string-append "--with-boost-libdir="

gnu/packages/libusb.scm

@@ -303,14 +303,14 @@ wrapper for accessing libusb-1.0.")
 (define-public libmtp
   (package
     (name "libmtp")
-    (version "1.1.15")
+    (version "1.1.16")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://sourceforge/libmtp/libmtp/" version
                                  "/libmtp-" version ".tar.gz"))
              (sha256
               (base32
-               "089h79nkz7wcr3lbqi7025l8p75hbp0aigxk3wdk2zkm8q5r0h6h"))))
+               "185vh9bds6dcy00ycggg69g4v7m3api40zv8vrcfb3fk3vfzjs2v"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))

gnu/packages/linux.scm

@@ -400,10 +400,10 @@ It has been modified to remove all non-free binary blobs.")
 ;; supports qemu "virt" machine and possibly a large number of ARM boards.
 ;; See : https://wiki.debian.org/DebianKernel/ARMMP.
 
-(define %linux-libre-version "4.18.16")
+(define %linux-libre-version "4.19.1")
-(define %linux-libre-hash "15apfgswp2lrwjpi3vwnanlkdw3q6rkvwrbgrb71rjsy9gazlz62")
+(define %linux-libre-hash "12mrrgg2ih4jiylpy45q5nsd8afj3nya0klr543s0mcga88v9527")
 
-(define %linux-libre-4.18-patches
+(define %linux-libre-4.19-patches
   (list %boot-logo-patch
         (origin
           (method url-fetch)
@@ -414,25 +414,17 @@ It has been modified to remove all non-free binary blobs.")
                 "arm-mm-export-__sync_icache_dcache-for-xen-privcmd.patch"))
           (file-name "linux-libre-4.18-arm-export-__sync_icache_dcache.patch")
           (sha256
-           (base32 "1ifnfhpakzffn4b8n7x7w5cps9mzjxlkcfz9zqak2vaw8nzvl39f")))
+           (base32 "1ifnfhpakzffn4b8n7x7w5cps9mzjxlkcfz9zqak2vaw8nzvl39f")))))
-        (origin
-          (method url-fetch)
-          (uri (string-append
-                "https://git.kernel.org/pub/scm/linux/kernel/git/arm64/linux.git"
-                "/patch/?id=c5157101e7793b42a56e07368c7f4cb73fb58008"))
-          (file-name "linux-libre-4.18-arm64-export-__sync_icache_dcache.patch")
-          (sha256
-           (base32 "0q13arsi8al3l3yq6d76z4h8n45wlpkjyxlrgn1sqbx5xjksycyz")))))
 
 (define-public linux-libre
   (make-linux-libre %linux-libre-version
                     %linux-libre-hash
                     %linux-compatible-systems
-                    #:patches %linux-libre-4.18-patches
+                    #:patches %linux-libre-4.19-patches
                     #:configuration-file kernel-config))
 
-(define %linux-libre-4.14-version "4.14.78")
+(define %linux-libre-4.14-version "4.14.79")
-(define %linux-libre-4.14-hash "07dhhw6zdnqn2dznpmkniz58hfkdx89yx7csm9vbx45blnyhjw5z")
+(define %linux-libre-4.14-hash "000rd4h2yk6k68wjg37v53hqnqw1mgwhdxbcvy8iywy8za9r12c8")
 
 (define-public linux-libre-4.14
   (make-linux-libre %linux-libre-4.14-version
@@ -456,7 +448,7 @@ It has been modified to remove all non-free binary blobs.")
   (make-linux-libre %linux-libre-version
                     %linux-libre-hash
                     '("armhf-linux")
-                    #:patches %linux-libre-4.18-patches
+                    #:patches %linux-libre-4.19-patches
                     #:defconfig "multi_v7_defconfig"
                     #:extra-version "arm-generic"))
 
@@ -471,7 +463,7 @@ It has been modified to remove all non-free binary blobs.")
   (make-linux-libre %linux-libre-version
                     %linux-libre-hash
                     '("armhf-linux")
-                    #:patches %linux-libre-4.18-patches
+                    #:patches %linux-libre-4.19-patches
                     #:defconfig "omap2plus_defconfig"
                     #:extra-version "arm-omap2plus"))
 
@@ -945,7 +937,7 @@ Zerofree requires the file system to be unmounted or mounted read-only.")
 (define-public strace
   (package
     (name "strace")
-    (version "4.24")
+    (version "4.25")
     (home-page "https://strace.io")
     (source (origin
              (method url-fetch)
@@ -953,7 +945,7 @@ Zerofree requires the file system to be unmounted or mounted read-only.")
                                  "/strace-" version ".tar.xz"))
              (sha256
               (base32
-               "0d061cdzk6a1822ds4wpqxg10ny27mi4i9zjmnsbz8nz3vy5jkhz"))))
+               "00f7zagfh3np5gwi0z7hi7zjd7s5nixcaq7z78n87dvhakkgi1fn"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases
@@ -1231,7 +1223,7 @@ that the Ethernet protocol is much simpler than the IP protocol.")
 (define-public iproute
   (package
     (name "iproute2")
-    (version "4.18.0")
+    (version "4.19.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1239,7 +1231,7 @@ that the Ethernet protocol is much simpler than the IP protocol.")
                     version ".tar.xz"))
               (sha256
                (base32
-                "0ida5njr9nacg6ym3rjvl3cc9czw0hn4akhzbqf8f4zmjl6cgrm9"))))
+                "114rlb3bvrf7q6yr03mn1rj6gl7mrg0psvm2dx0qb2kxyjhmrv6r"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f                                ; no test suite

gnu/packages/lisp.scm

@@ -2382,19 +2382,17 @@ new fiends in addition to old friends like @command{aif} and
          (sha256
           (base32
            "127v5avpz1i4m0lkaxqrq8hrl69rdazqaxf6s8awf0nd7wj2g4dp"))
-         (file-name (git-file-name "lift" version))))
+         (file-name (git-file-name "lift" version))
+         (modules '((guix build utils)))
+         (snippet
+          ;; Don't keep the bundled website
+          `(begin
+             (delete-file-recursively "website")
+             #t))))
       (build-system asdf-build-system/sbcl)
       (arguments
        ;; The tests require a debugger, but we run with the debugger disabled.
-       '(#:tests? #f
+       '(#:tests? #f))
-         #:phases
-         (modify-phases %standard-phases
-           ;; Do this to ensure the 'reset-gzip-timestamps phase works.
-           (add-after 'unpack 'make-gzips-writeable
-             (lambda _
-               (for-each (lambda (file)
-                           (chmod file #o755))
-                         (find-files "." "\\.gz$")))))))
       (synopsis "LIsp Framework for Testing")
       (description
        "The LIsp Framework for Testing (LIFT) is a unit and system test tool for LISP.
@@ -2403,7 +2401,7 @@ testcases are organized into hierarchical testsuites each of which can have
 its own fixture.  When run, a testcase can succeed, fail, or error.  LIFT
 supports randomized testing, benchmarking, profiling, and reporting.")
       (home-page "https://github.com/gwkkwg/lift")
-      (license license:x11-style))))
+      (license license:expat))))
 
 (define-public cl-lift
   (sbcl-package->cl-source-package sbcl-lift))
@@ -2663,7 +2661,6 @@ pattern-matching-like, but a char-by-char procedural parser.")
        "This package exports the following function to parse floating-point
 values from a string in Common Lisp.")
       (home-page "https://github.com/soemraws/parse-float")
-      ;; TODO: Missing license?
       (license license:public-domain))))
 
 (define-public cl-parse-float

gnu/packages/lua.scm

@@ -408,6 +408,9 @@ Grammars (PEGs).")
 (define-public lua-lpeg
   (make-lua-lpeg "lua-lpeg" lua))
 
+(define-public lua5.1-lpeg
+  (make-lua-lpeg "lua5.1-lpeg" lua-5.1))
+
 (define-public lua5.2-lpeg
   (make-lua-lpeg "lua5.2-lpeg" lua-5.2))
 

gnu/packages/mail.scm

@@ -6,7 +6,7 @@
 ;;; Copyright © 2014 Julien Lepiller <julien@lepiller.eu>
 ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
 ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
-;;; Copyright © 2015, 2016 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2015, 2016, 2018 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
@@ -126,24 +126,14 @@
 (define-public mailutils
   (package
     (name "mailutils")
-    (version "3.4")
+    (version "3.5")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnu/mailutils/mailutils-"
-                                 version ".tar.bz2"))
+                                 version ".tar.xz"))
              (sha256
               (base32
-               "1dn71p85wlyisnwsb485sk3q5v393k3dizsa9fmimskdwjwgk3ch"))
+               "1wx275w38fwni2abc8g7g3irbk332vr34byxd72zqfdiznsqgims"))))
-             (patches
-              (search-patches "mailutils-uninitialized-memory.patch"))
-             (snippet
-              ;; For a rebuild of the Flex/Bison byproducts touched by the
-              ;; patch above.
-              '(begin
-                 (for-each delete-file
-                           '("mh/mh_alias_lex.c"
-                             "libmailutils/cfg/parser.c"))
-                 #t))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases
@@ -194,19 +184,22 @@
 
              #t)))
        ;; TODO: Add `--with-sql'.
-       #:configure-flags '("--sysconfdir=/etc")
+       #:configure-flags (list "--sysconfdir=/etc"
+
+                               ;; Add "/2.2" to the installation directory.
+                               (string-append "--with-guile-site-dir="
+                                              (assoc-ref %outputs "out")
+                                              "/share/guile/site/2.2"))
+
        #:parallel-tests? #f))
     (native-inputs
-     ;; Note: Bison and Flex needed due to
+     `(("perl" ,perl)))                           ;for 'gylwrap'
-     ;; 'mailutils-uninitialized-memory.patch'.
-     `(("bison" ,bison)
-       ("flex" ,flex)
-       ("perl" ,perl)))                           ;for 'gylwrap'
     (inputs
      `(("dejagnu" ,dejagnu)
        ("m4" ,m4)
        ("texinfo" ,texinfo)
-       ("guile" ,guile-2.0)
+       ("guile" ,guile-2.2)
+       ("gsasl" ,gsasl)
        ("gnutls" ,gnutls)
        ("ncurses" ,ncurses)
        ("readline" ,readline)
@@ -1857,7 +1850,7 @@ converts them to maildir format directories.")
 (define-public mpop
   (package
     (name "mpop")
-    (version "1.2.8")
+    (version "1.4.0")
     (source
      (origin
        (method url-fetch)
@@ -1865,7 +1858,7 @@ converts them to maildir format directories.")
                            name "-" version ".tar.xz"))
        (sha256
         (base32
-         "1skrda7lbks5h0v03ab8bhpg6ma1b63if8x9x3kb2fv70x2pkhqn"))))
+         "14xsvpm5bc1wycisq882gqrnamnyi1q4rlk6anlw8ihzvwgm4h2j"))))
     (build-system gnu-build-system)
     (inputs
      `(("gnutls" ,gnutls)
@@ -2621,3 +2614,29 @@ within the message, and allows you to choose one or more URLs to send to your
 Web browser.  Alternatively, it send a list of all URLs to stdout.  It is a
 replacement for the @code{urlview} program.")
     (license gpl2)))
+
+(define-public tnef
+  (package
+    (name "tnef")
+    (version "1.4.17")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/verdammelt/tnef.git")
+             (commit version)))
+       (sha256
+        (base32
+         "0cq2xh5wd74qn6k2nnw5rayxgqhjl3jbzf4zlc4babcwxrv32ldh"))
+       (file-name (git-file-name name version))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("autoconf" ,autoconf)
+       ("automake" ,automake)))
+    (arguments `(#:parallel-tests? #f)) ;tests are side-effect'y
+    (home-page "https://github.com/verdammelt/tnef")
+    (synopsis "Unpack @code{application/ms-tnef} attachments")
+    (description
+     "TNEF is a tar-like program that unpacks MIME attachments of type
+@code{application/ms-tnef}.")
+    (license gpl2+)))

gnu/packages/maths.scm

@@ -286,13 +286,13 @@ programming language.")
 (define-public units
   (package
    (name "units")
-   (version "2.17")
+   (version "2.18")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnu/units/units-" version
                                 ".tar.gz"))
             (sha256 (base32
-                     "1n2xzpnxfn475zkd8rzs5gg58xszjbr4bdbgvk6hryzimvwwj0qz"))))
+                     "0y26kj349i048y4z3xrk90bvciw2j6ds3rka7r7yn3183hirr5b4"))))
    (build-system gnu-build-system)
    (inputs
     `(("readline" ,readline)
@@ -2110,16 +2110,14 @@ programming problems.")
 (define-public r-pracma
   (package
     (name "r-pracma")
-    (version "2.1.5")
+    (version "2.1.8")
     (source (origin
       (method url-fetch)
       (uri (cran-uri "pracma" version))
       (sha256
-        (base32 "18cv7c2gvagbmggfbsy2xk9bpn47izd0qrmqnc3q7afvj6pr6nf9"))))
+        (base32 "0m8ladhrfyxwybblkcdgg4xv1mk5kibmwarpj2k0c2y34zzcix4z"))))
     (build-system r-build-system)
-    (propagated-inputs
+    (home-page "https://cran.r-project.org/web/packages/pracma/")
-     `(("r-quadprog" ,r-quadprog)))
-    (home-page "https://cran.r-project.org/web/packages/pracma")
     (synopsis "Practical numerical math functions")
     (description "This package provides functions for numerical analysis and
 linear algebra, numerical optimization, differential equations, plus some
@@ -3294,7 +3292,7 @@ Failure to do so will result in a library with poor performance.")
 (define-public glm
   (package
     (name "glm")
-    (version "0.9.9.2")
+    (version "0.9.9.3")
     (source
      (origin
        (method url-fetch)
@@ -3302,7 +3300,7 @@ Failure to do so will result in a library with poor performance.")
                            version  "/glm-" version ".zip"))
        (sha256
         (base32
-         "1m2gws1d7l6h4mdn0ap74pfnm3vva3kk8rybdqd5x4lksd1mk6r0"))))
+         "0yqk5r3qh60d4r2iab5q7wq0fryn8p3pz6s28y1i7amqj1aqavj9"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("unzip" ,unzip)))

gnu/packages/messaging.scm

@@ -32,71 +32,72 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages messaging)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix utils)
-  #:use-module (guix packages)
-  #:use-module (guix download)
-  #:use-module (guix git-download)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system glib-or-gtk)
-  #:use-module (guix build-system meson)
-  #:use-module (guix build-system python)
-  #:use-module (guix build-system perl)
-  #:use-module (guix build-system cmake)
   #:use-module (gnu packages)
+  #:use-module (gnu packages admin)
   #:use-module (gnu packages aidc)
   #:use-module (gnu packages aspell)
+  #:use-module (gnu packages audio)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages avahi)
   #:use-module (gnu packages base)
+  #:use-module (gnu packages bash)
+  #:use-module (gnu packages bison)
   #:use-module (gnu packages check)
+  #:use-module (gnu packages compression)
   #:use-module (gnu packages crypto)
   #:use-module (gnu packages curl)
   #:use-module (gnu packages cyrus-sasl)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages documentation)
   #:use-module (gnu packages enchant)
+  #:use-module (gnu packages fontutils)
   #:use-module (gnu packages gettext)
-  #:use-module (gnu packages gnome)
-  #:use-module (gnu packages gtk)
-  #:use-module (gnu packages image)
-  #:use-module (gnu packages xorg)
-  #:use-module (gnu packages xdisorg)
-  #:use-module (gnu packages libcanberra)
-  #:use-module (gnu packages man)
-  #:use-module (gnu packages networking)
-  #:use-module (gnu packages libidn)
-  #:use-module (gnu packages lua)
-  #:use-module (gnu packages xml)
-  #:use-module (gnu packages gnupg)
-  #:use-module (gnu packages ncurses)
-  #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages glib)
-  #:use-module (gnu packages python)
+  #:use-module (gnu packages gnome)
-  #:use-module (gnu packages python-crypto)
+  #:use-module (gnu packages gnupg)
+  #:use-module (gnu packages gtk)
+  #:use-module (gnu packages guile)
+  #:use-module (gnu packages icu4c)
+  #:use-module (gnu packages image)
+  #:use-module (gnu packages less)
+  #:use-module (gnu packages libcanberra)
+  #:use-module (gnu packages libidn)
+  #:use-module (gnu packages linux)
+  #:use-module (gnu packages lua)
+  #:use-module (gnu packages man)
+  #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages networking)
   #:use-module (gnu packages pcre)
   #:use-module (gnu packages perl)
+  #:use-module (gnu packages photo)
+  #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages protobuf)
+  #:use-module (gnu packages python)
+  #:use-module (gnu packages python-crypto)
+  #:use-module (gnu packages python-web)
+  #:use-module (gnu packages qt)
+  #:use-module (gnu packages readline)
   #:use-module (gnu packages tcl)
-  #:use-module (gnu packages compression)
+  #:use-module (gnu packages texinfo)
-  #:use-module (gnu packages check)
-  #:use-module (gnu packages admin)
-  #:use-module (gnu packages linux)
   #:use-module (gnu packages textutils)
   #:use-module (gnu packages tls)
-  #:use-module (gnu packages icu4c)
-  #:use-module (gnu packages qt)
   #:use-module (gnu packages video)
   #:use-module (gnu packages web)
+  #:use-module (gnu packages xdisorg)
   #:use-module (gnu packages xiph)
-  #:use-module (gnu packages audio)
+  #:use-module (gnu packages xml)
-  #:use-module (gnu packages bison)
+  #:use-module (gnu packages xorg)
-  #:use-module (gnu packages fontutils)
+  #:use-module (guix build-system cmake)
-  #:use-module (gnu packages bash)
+  #:use-module (guix build-system glib-or-gtk)
-  #:use-module (gnu packages guile)
+  #:use-module (guix build-system gnu)
-  #:use-module (gnu packages less)
+  #:use-module (guix build-system meson)
-  #:use-module (gnu packages readline)
+  #:use-module (guix build-system perl)
-  #:use-module (gnu packages photo)
+  #:use-module (guix build-system python)
-  #:use-module (gnu packages texinfo))
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix packages)
+  #:use-module (guix utils))
 
 (define-public libotr
   (package
@@ -1647,7 +1648,7 @@ notifications, and Python scripting support.")
 (define-public libqmatrixclient
   (package
     (name "libqmatrixclient")
-    (version "0.3.0.2")
+    (version "0.4.0")
     (source
      (origin
        (method git-fetch)
@@ -1657,7 +1658,7 @@ notifications, and Python scripting support.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "03pxmr4wa818fgqddkr2fkwz6pda538x3ic9yq7c40x98zqf55w5"))))
+         "1llzqjagvp91kcg26q5c4qw9aaz7wna3rh6k06rc3baivrjqf3cn"))))
     (build-system cmake-build-system)
     (inputs
      `(("qtbase" ,qtbase)))
@@ -1675,7 +1676,7 @@ QMatrixClient project.")
 (define-public quaternion
   (package
     (name "quaternion")
-    (version "0.0.9.2")
+    (version "0.0.9.3")
     (source
      (origin
        (method git-fetch)
@@ -1685,31 +1686,31 @@ QMatrixClient project.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0zrr4khbbdf5ziq65gi0cb1yb1d0y5rv18wld22w1x96f7fkmrib"))))
+         "1hr9zqf301rg583n9jv256vzj7y57d8qgayk7c723bfknf1s6hh3"))))
     (build-system cmake-build-system)
     (inputs
      `(("libqmatrixclient" ,libqmatrixclient)
        ("qtbase" ,qtbase)
-       ("qtdeclarative" ,qtdeclarative)))
+       ("qtdeclarative" ,qtdeclarative)
+       ("qtquickcontrols" ,qtquickcontrols)
+       ("qtsvg" ,qtsvg)
+       ("qttools" ,qttools)))
     (arguments
      `(#:tests? #f ; No tests
        #:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'fix-libqmatrixclient-dynamic-linking
+         (add-after 'install 'wrap-program
-           ;; Upstream recommends statically linking with
+           (lambda* (#:key inputs outputs #:allow-other-keys)
-           ;; libqmatrixclient. Patch the source so that we can dynamically
+             (wrap-program (string-append (assoc-ref outputs "out")
-           ;; link instead. In a future release, when upstream moves to
+                                          "/bin/quaternion")
-           ;; dynamic linking, remove this phase.
+               `("QT_PLUGIN_PATH" ":" prefix
-           (lambda _
+                 (,(string-append (assoc-ref inputs "qtsvg")
-             (substitute* "CMakeLists.txt"
+                                  "/lib/qt5/plugins")))
-               (("^add_subdirectory\\(lib\\)" all)
+               `("QML2_IMPORT_PATH" ":" prefix
-                (string-append "#" all)))
+                 ,(map (lambda (label)
-             (for-each
+                         (string-append (assoc-ref inputs label)
-              (lambda (file)
+                                        "/lib/qt5/qml"))
-                (substitute* file
+                       '("qtdeclarative" "qtquickcontrols"))))
-                  (("#include \"lib/([^\"]*)\"" all header)
-                   (string-append "#include <" header ">"))))
-              (find-files "client" "\\.(cpp|h)$"))
              #t)))))
     (home-page "https://matrix.org/docs/projects/client/quaternion.html")
     (synopsis "Graphical client for the Matrix instant messaging protocol")
@@ -1720,4 +1721,128 @@ QMatrixClient project.")
     (license (list license:gpl3+ ; all source code
                    license:lgpl3+)))) ; icons/breeze
 
+(define-public hangups
+  (package
+    (name "hangups")
+    (version "0.4.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "hangups" version))
+       (sha256
+        (base32 "0mvpfd5dc3zgcvwfidcd2qyn59xl5biv728mxifw0ls5rzkc9chs"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'relax-dependencies
+           ;; Relax overly strict package version specifications.
+           (lambda _
+             (substitute* "setup.py"
+               (("==") ">="))
+             #t)))))
+    (propagated-inputs
+     `(("python-aiohttp" ,python-aiohttp)
+       ("python-appdirs" ,python-appdirs)
+       ("python-async-timeout" ,python-async-timeout)
+       ("python-configargparse" ,python-configargparse)
+       ("python-mechanicalsoup" ,python-mechanicalsoup)
+       ("python-protobuf" ,python-protobuf)
+       ("python-readlike" ,python-readlike)
+       ("python-reparser" ,python-reparser)
+       ("python-requests" ,python-requests)
+       ("python-urwid" ,python-urwid)))
+    (home-page "https://hangups.readthedocs.io/")
+    (synopsis "Instant messaging client for Google Hangouts")
+    (description
+     "Hangups is an instant messaging client for Google Hangouts.  It includes
+both a Python library and a reference client with a text-based user interface.
+
+Hangups is implements a reverse-engineered version of Hangouts' proprietary,
+non-interoperable protocol, which allows it to support features like group
+messaging that aren’t available to clients that connect over XMPP.")
+    (license license:expat)))
+
+(define-public telegram-purple
+  (package
+    (name "telegram-purple")
+    (version "1.3.1")
+    (home-page "https://github.com/majn/telegram-purple")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url home-page)
+                    (commit (string-append "v" version))
+                    (recursive? #t)))
+              (sha256
+               (base32
+                "0p93jpjpx7hszwffzgixw04zkrpsiyzz4za3gfr4j07krc4771fp"))
+              (modules '((guix build utils)))
+              (snippet
+               '(begin
+                  (substitute* "Makefile.in"
+                    ;; By default these two directories point to Pidgin's own
+                    ;; prefix.
+                    (("^PLUGIN_DIR_PURPLE=.*")
+                     (string-append
+                      "exec_prefix := @exec_prefix@\n"
+                      "PLUGIN_DIR_PURPLE := @libdir@/purple-2\n"))
+                    (("^DATA_ROOT_DIR_PURPLE=.*")
+                     "DATA_ROOT_DIR_PURPLE := @datarootdir@\n")
+
+                    ;; Honor sysconfdir instead of trying to write to /etc.
+                    (("DESTDIR\\)/etc/telegram-purple")
+                     "DESTDIR)@sysconfdir@/telegram-purple"))
+                  #t))
+              (patches (search-patches "telegram-purple-adjust-test.patch"))
+              (file-name (git-file-name name version))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("pkg-config" ,pkg-config)
+       ("which" ,which)))
+    (inputs
+     `(("pidgin" ,pidgin)
+       ("libgcrypt" ,libgcrypt)
+       ("libwebp" ,libwebp)
+       ("glib" ,glib)
+       ("gettext" ,gnu-gettext)
+       ("gtk+" ,gtk+-2)
+       ("zlib" ,zlib)))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         ;; We're using release tag for repository checkout - let's prepare
+         ;; header defining GIT_COMMIT manually instead of running git to
+         ;; identify version which is being compiled. Git repository
+         ;; is removed anyway and only source code is kept.
+         (add-after 'unpack 'prepare-commit.h
+           (lambda _
+             (with-output-to-file "./commit.h"
+               (lambda ()
+                 (display
+                  (string-append "//generated by guix, use version instead of "
+                                 "commit\n"
+                                 "#ifndef GIT_COMMIT\n"
+                                 "#  define GIT_COMMIT \"v"
+                                 ,version "\"\n"
+                                 "#endif\n"))))
+             #t))
+         (add-before 'configure 'set-SHELL-variables
+           ;; Set these environment variables so that 'tgl/configure' uses the
+           ;; right shell and not /bin/sh.
+           (lambda _
+             (let ((bash (which "bash")))
+               (setenv "SHELL" bash)
+               (setenv "CONFIG_SHELL" bash)
+               #t))))))
+    (synopsis "Telegram messaging support for Pidgin")
+    (description
+     "Telegram-purple is a plugin for Libpurple, the communication library
+used by the Pidgin instant messaging client, that adds support for the
+Telegram messenger.")
+
+    ;; Code under tgl/ (the Telegram library) is LGPLv2.1+, but the plugin
+    ;; itself is GPLv2+.
+    (license license:gpl2+)))
+
 ;;; messaging.scm ends here

gnu/packages/monitoring.scm

@@ -32,6 +32,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix utils)
   #:use-module (gnu packages admin)
+  #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages curl)
   #:use-module (gnu packages check)
@@ -39,6 +40,7 @@
   #:use-module (gnu packages databases)
   #:use-module (gnu packages django)
   #:use-module (gnu packages gd)
+  #:use-module (gnu packages gettext)
   #:use-module (gnu packages image)
   #:use-module (gnu packages mail)
   #:use-module (gnu packages networking)
@@ -403,3 +405,27 @@ WSGI and the node exporter textfile collector.")
 written in Go with pluggable metric collectors.")
       (home-page "https://github.com/prometheus/node_exporter")
       (license license:asl2.0))))
+
+(define-public fswatch
+  (package
+    (name "fswatch")
+    (version "1.13.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                      (url "https://github.com/emcrisostomo/fswatch.git")
+                      (commit version)))
+              (file-name (string-append name "-" version "-checkout"))
+              (sha256
+               (base32
+                "0r9m3rysqa1kdgghv2i6sv4zrd0v8idsbrp627ys642dl39svir3"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("autoconf" ,autoconf)
+       ("automake" ,automake)
+       ("gettext" ,gettext-minimal)
+       ("libtool" ,libtool)))
+    (synopsis "File system monitor")
+    (description "This package provides a file system monitor.")
+    (home-page "https://github.com/emcrisostomo/fswatch")
+    (license license:gpl3+)))

gnu/packages/mono.scm

@@ -105,5 +105,5 @@
     (description "Mono is a compiler, vm, debugger and set of libraries for
 C#, a C-style programming language from Microsoft that is very similar to
 Java.")
-    (home-page "http://mono-project.com/")
+    (home-page "https://www.mono-project.com/")
     (license license:x11)))

gnu/packages/mpd.scm

@@ -90,7 +90,7 @@ interfacing MPD in the C, C++ & Objective C languages.")
 (define-public mpd
   (package
     (name "mpd")
-    (version "0.20.21")
+    (version "0.20.23")
     (source (origin
               (method url-fetch)
               (uri
@@ -99,7 +99,7 @@ interfacing MPD in the C, C++ & Objective C languages.")
                               "/mpd-" version ".tar.xz"))
               (sha256
                (base32
-                "1p2qrhdb1gzfv3y5dvvbc9s2wwmhg3azvzf8r02hzhk5q96pc8l3"))))
+                "1smg6hab4kwrzsw1k7vlpya3ampdk8psnmkrzxlgb43j4fgmygjh"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -165,7 +165,7 @@ protocol.")
 (define-public mpd-mpc
   (package
     (name "mpd-mpc")
-    (version "0.30")
+    (version "0.31")
     (source (origin
               (method url-fetch)
               (uri
@@ -174,10 +174,12 @@ protocol.")
                               "/mpc-" version ".tar.xz"))
               (sha256
                (base32
-                "1kkzhrypkp0v6xv4d6db415pd0h6jqki29kfpsnfkvrhhh55pz35"))))
+                "0b9bsn4sl26xc6wdcms51x9yxznkxkppaycn8gnv4rd1m21kwdv2"))))
     (build-system meson-build-system)
     (inputs `(("libmpdclient" ,libmpdclient)))
-    (native-inputs `(("pkg-config" ,pkg-config)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)
+       ("python-sphinx" ,python-sphinx)))
     (synopsis "Music Player Daemon client")
     (description "MPC is a minimalist command line interface to MPD, the music
 player daemon.")

gnu/packages/networking.scm

@@ -538,7 +538,7 @@ and up to 1 Mbit/s downstream.")
 (define-public whois
   (package
     (name "whois")
-    (version "5.3.2")
+    (version "5.4.0")
     (source
      (origin
        (method url-fetch)
@@ -546,7 +546,7 @@ and up to 1 Mbit/s downstream.")
                            name "_" version ".tar.xz"))
        (sha256
         (base32
-         "0m3352d5b0ragygbqjbaimghrbx4va2rixa34j5a1g3jj6l4nwbr"))))
+         "0y73b3z1akni620s1hlrijwdrk95ca1c8csjds48vpd6z86awx9p"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f                      ; no test suite

gnu/packages/package-management.scm

@@ -568,13 +568,13 @@ transactions from C or Python.")
 (define-public diffoscope
   (package
     (name "diffoscope")
-    (version "102")
+    (version "104")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri name version))
               (sha256
                (base32
-                "0v2z98xx7n4viw12yq83flpb9ir5ahy1gn44pic0i3dam18xhcm6"))))
+                "0vnfhnvqvdwgh1sh2lmwad8jk2vjvq76p5xm3pfgxdik2yblmvqd"))))
     (build-system python-build-system)
     (arguments
      `(#:phases (modify-phases %standard-phases

gnu/packages/parallel.scm

@@ -48,7 +48,7 @@
 (define-public parallel
   (package
     (name "parallel")
-    (version "20180922")
+    (version "20181022")
     (source
      (origin
       (method url-fetch)
@@ -56,7 +56,7 @@
                           version ".tar.bz2"))
       (sha256
        (base32
-        "07q7lzway2qf8mx6fb4q45jmirsc8pw6rgv03ifrp32jw3q8w1za"))))
+        "1v6vrfnn6acjjlp8xiizvcrb3zzs94av5xcl6xm8zfvcapixx11f"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases

gnu/packages/password-utils.scm

@@ -735,15 +735,15 @@ password cracking.")
 (define-public hashcat-utils
   (package
     (name "hashcat-utils")
-    (version "1.8")
+    (version "1.9")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "https://github.com/hashcat/hashcat-utils/releases/download/v"
+       (uri (string-append "https://github.com/hashcat/hashcat-utils/releases/"
-                           version "/hashcat-utils-1.8.7z"))
+                           "download/v" version "/"
+                           "hashcat-utils-" version ".7z"))
        (sha256
-        (base32
+        (base32 "0kq555kb338691qd7zjmi8vhq4km3apnsl2w63zh0igwzcjx6lx1"))))
-         "1x80rngjz7gkhwplhw1iqr0wzb6hjkrjfld2kz9kmgp5dr9nys1p"))))
     (native-inputs
      `(("p7zip" ,p7zip)))
     (inputs
@@ -767,12 +767,16 @@ password cracking.")
            (lambda* (#:key outputs #:allow-other-keys)
              (let ((out (string-append (assoc-ref outputs "out") "/bin")))
                (mkdir-p out)
-               (for-each (lambda (file)
+               (for-each
-                           (copy-file file (string-append out "/" (basename file ".bin"))))
+                (lambda (file)
-                         (find-files "." "\\.bin$"))
+                  (copy-file file (string-append out "/"
-               (for-each (lambda (file)
+                                                 (basename file ".bin"))))
-                           (copy-file file (string-append out "/" (basename file ".pl"))))
+                (find-files "." "\\.bin$"))
-                         (find-files "../bin" "\\.pl$"))
+               (for-each
+                (lambda (file)
+                  (copy-file file (string-append out "/"
+                                                 (basename file ".pl"))))
+                (find-files "../bin" "\\.pl$"))
                #t))))))
     (home-page "https://github.com/hashcat/hashcat-utils/")
     (synopsis "Small utilities that are useful in advanced password cracking")

gnu/packages/patches/mailutils-uninitialized-memory.patch

@@ -1,87 +0,0 @@
-Without this patch, the MH test suite would fail when building with
-glibc 2.26, with 'ali' segfaulting like this:
-
-  Core was generated by `/tmp/guix-build-mailutils-3.4.drv-0/mailutils-3.4/mh/.libs/ali -a ./Mail/mh_ali'.
-  Program terminated with signal SIGSEGV, Segmentation fault.
-  #0  0x00007f8eac263a14 in hash (
-      name=0x72642e342e332d73 <error: Cannot access memory at address 0x72642e342e332d73>, hash_num=0) at assoc.c:102
-  102	  for (i = 0; *name; name++)
-  (gdb) bt
-  #0  0x00007f8eac263a14 in hash (
-      name=0x72642e342e332d73 <error: Cannot access memory at address 0x72642e342e332d73>, hash_num=0) at assoc.c:102
-  #1  0x00007f8eac263e6b in assoc_find_slot (assoc=0xaa59e0, 
-      name=0x72642e342e332d73 <error: Cannot access memory at address 0x72642e342e332d73>, install=0x0, slot=0x7ffcddcbf2b8) at assoc.c:219
-  #2  0x00007f8eac264124 in mu_assoc_lookup (assoc=0xaa59e0, 
-      name=0x72642e342e332d73 <error: Cannot access memory at address 0x72642e342e332d73>, dataptr=0x7ffcddcbf2e0) at assoc.c:308
-  #3  0x00007f8eac29e8ac in mu_ident_deref (
-      name=0x72642e342e332d73 <error: Cannot access memory at address 0x72642e342e332d73>) at ident.c:98
-  #4  0x00007f8eac29f8a6 in mu_locus_point_deinit (pt=0xaa5718) at locus.c:48
-  #5  0x00007f8eac29fa1b in mu_locus_range_deinit (lr=0xaa5718) at locus.c:99
-  #6  0x00007f8eac29f9db in mu_locus_range_copy (dest=0xaa5718, 
-      src=0x622be0 <ali_yylloc>) at locus.c:89
-  #7  0x0000000000408a2a in push_source (name=0xaa74bc "mh_aliases2", fail=1)
-      at mh_alias_lex.l:170
-
-commit b330af9008e4c9168b379867b854f5900a539ad7
-Author: Sergey Poznyakoff <gray@gnu.org>
-Date:   Sat Nov 18 10:15:48 2017 +0200
-
-    Fix the use of uninitialized memory
-    
-    * mh/mh_alias_lex.l (push_source): Initialize locus range prior to copying
-    to it.
-    * libmailutils/cfg/parser.y (mu_cfg_tree_create_node): Likewise.
-    * libmu_sieve/util.c: (mu_sieve_value_create): Likewise.
-
-diff --git a/libmailutils/cfg/parser.y b/libmailutils/cfg/parser.y
-index 4503c7781..3436b8d90 100644
---- a/libmailutils/cfg/parser.y
-+++ b/libmailutils/cfg/parser.y
-@@ -1134,10 +1134,9 @@ mu_cfg_tree_create_node (struct mu_cfg_tree *tree,
-   
-   np = mu_alloc (size);
-   np->type = type;
-+  mu_locus_range_init (&np->locus);
-   if (loc)
-     mu_locus_range_copy (&np->locus, loc);
--  else
--    memset (&np->locus, 0, sizeof np->locus);
-   p = (char*) (np + 1);
-   np->tag = p;
-   strcpy (p, tag);
-diff --git a/libmu_sieve/sieve-lex.l b/libmu_sieve/sieve-lex.l
-index fd145bfe1..f14e80194 100644
---- a/libmu_sieve/sieve-lex.l
-+++ b/libmu_sieve/sieve-lex.l
-@@ -190,6 +190,7 @@ push_source (const char *name)
-     {
-       ctx = mu_sieve_malloc (mu_sieve_machine, sizeof (*ctx));
-       ctx->trk = trk;
-+      mu_locus_range_init (&ctx->incl_range);
-       mu_locus_range_copy (&ctx->incl_range, &yylloc);
-       ctx->i_node = sieve_source_inode;
-       ctx->input = input_stream;
-diff --git a/libmu_sieve/util.c b/libmu_sieve/util.c
-index 8d62a60c2..7d71b5509 100644
---- a/libmu_sieve/util.c
-+++ b/libmu_sieve/util.c
-@@ -55,6 +55,7 @@ mu_sieve_value_create (mu_sieve_machine_t mach, mu_sieve_data_type type,
-   val->locus.end.mu_line = locus->end.mu_line;
-   val->locus.end.mu_col = locus->end.mu_col;
-   
-+  mu_locus_range_init (&val->locus);
-   mu_locus_range_copy (&val->locus, locus);
-   switch (type)
-     {
-diff --git a/mh/mh_alias_lex.l b/mh/mh_alias_lex.l
-index 371353ed3..b97264b38 100644
---- a/mh/mh_alias_lex.l
-+++ b/mh/mh_alias_lex.l
-@@ -167,6 +167,7 @@ push_source (const char *name, int fail)
-     {
-       ctx = mu_alloc (sizeof (*ctx));
-       ctx->trk = trk;
-+      mu_locus_range_init (&ctx->incl_range);
-       mu_locus_range_copy (&ctx->incl_range, &yylloc);
-       ctx->exec_p = exec_p;
-       ctx->i_node = ali_source_inode;

gnu/packages/patches/meandmyshadow-define-paths-earlier.patch

@@ -0,0 +1,50 @@
+From: Tobias Geerinckx-Rice <me@tobias.gr>
+Date: Wed, 31 Oct 2018 02:24:26 +0100
+Subject: [PATCH] gnu: meandmyshadow: Define paths earlier.
+
+The following patch was taken verbatim from the upstream repository[0]
+and will be included in the next release.
+
+[0]: https://github.com/acmepjz/meandmyshadow/pull/29
+---
+From 4847e6b5755258a1e0534f2d4b91dce2ce3b459e Mon Sep 17 00:00:00 2001
+From: Dmitry Marakasov <amdmi3@amdmi3.ru>
+Date: Wed, 24 Oct 2018 23:31:19 +0300
+Subject: [PATCH] Define paths earlier in CMakeLists.txt
+
+At the very least, paths should be defined before Configure_File(), otherwise empty DATAROOTDIR is substituted in config.h
+---
+ CMakeLists.txt | 13 +++++++------
+ 1 file changed, 7 insertions(+), 6 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index e79639a..6321d9d 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -2,6 +2,13 @@ Project (meandmyshadow)
+ CMake_Minimum_Required (VERSION 3.1)
+ Set (CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}/cmake/Modules/")
+ 
++#Path options
++Set (BINDIR "bin" CACHE STRING "Where to install binaries")
++Set (DATAROOTDIR "${CMAKE_INSTALL_PREFIX}/share" CACHE STRING "Sets the root of data directories to a non-default location")
++Set (ICONDIR "${DATAROOTDIR}/icons" CACHE STRING "Sets the icon directory for desktop entry to a non-default location.")
++Set (DESKTOPDIR "${DATAROOTDIR}/applications" CACHE STRING "Sets the desktop file directory for desktop entry to a non-default location.")
++
++#Options
+ Option (DEBUG_MODE "Compile the game with debug mode enabled" OFF)
+ Option (DISABLED_DEBUG_STUFF "Enable this you'll see a lot of annoying script debug messages which will lag the game." OFF)
+ 
+@@ -164,12 +171,6 @@ Target_Link_Libraries (
+ 	${LUA_LIBRARIES}
+ )
+ 
+-#Path options
+-Set (BINDIR "bin" CACHE STRING "Where to install binaries")
+-Set (DATAROOTDIR "${CMAKE_INSTALL_PREFIX}/share" CACHE STRING "Sets the root of data directories to a non-default location")
+-Set (ICONDIR "${DATAROOTDIR}/icons" CACHE STRING "Sets the icon directory for desktop entry to a non-default location.")
+-Set (DESKTOPDIR "${DATAROOTDIR}/applications" CACHE STRING "Sets the desktop file directory for desktop entry to a non-default location.")
+-
+ #Install locations
+ Install (DIRECTORY ${PROJECT_SOURCE_DIR}/data DESTINATION ${DATAROOTDIR}/meandmyshadow/)
+ Install (FILES AUTHORS DESTINATION ${DATAROOTDIR}/meandmyshadow/)

gnu/packages/patches/myrepos-CVE-2018-7032.patch

@@ -1,69 +0,0 @@
-http://source.myrepos.branchable.com/?p=source.git;a=patch;h=40a3df21c73f1bb1b6915cc6fa503f50814664c8
-This can be removed with the next release. It was modified slightly to apply
-
-From 40a3df21c73f1bb1b6915cc6fa503f50814664c8 Mon Sep 17 00:00:00 2001
-From: Paul Wise <pabs3@bonedaddy.net>
-Date: Sun, 11 Feb 2018 21:57:49 +0800
-Subject: [PATCH] Mitigate vulnerabilities caused by some git remotes being
- able to execute code
-
-Set GIT_PROTOCOL_FROM_USER=0 with git versions newer than 2.12.
-
-Prevent remote websites from causing cloning of local repositories.
-
-Manually whitelist known-safe protocols (http, https, git, ssh)
-when using git versions older than 2.12.
-
-Fixes: CVE-2018-7032
-Fixes: https://bugs.debian.org/840014
-Suggestions-by: Jakub Wilk <jwilk@jwilk.net>
-Reported-by: Jakub Wilk <jwilk@jwilk.net>
----
- webcheckout | 22 +++++++++++++++++++++-
- 1 file changed, 21 insertions(+), 1 deletion(-)
-
-diff --git a/webcheckout b/webcheckout
-index e98da5c..de497ba 100755
---- a/webcheckout
-+++ b/webcheckout
-@@ -71,6 +71,16 @@ use Getopt::Long;
- use warnings;
- use strict;
- 
-+# Mitigate some git remote types being dangerous
-+my $git_unsafe = 1;
-+my $git_version = `git --version`;
-+$git_version =~ s{^git version }{};
-+my ($major, $minor) = split(/\./, $git_version);
-+if (int($major) >= 2 && int($minor) >= 12) {
-+	$ENV{GIT_PROTOCOL_FROM_USER} = 0;
-+	$git_unsafe = 0;
-+}
-+
- # What to download.
- my $url;
- 
-@@ -89,7 +99,17 @@ my $destdir;
- 
- # how to perform checkouts
- my %handlers=(
--	git => sub { doit("git", "clone", shift, $destdir) },
--	svn => sub { doit("svn", "checkout", shift, $destdir) },
--	bzr => sub { doit("bzr", "branch", shift, $destdir) },
-+	git => sub {
-+		my $git_url = shift;
-+		# Reject unsafe URLs with older versions of git
-+		# that do not already check the URL safety.
-+		if ($git_unsafe && $git_url !~ m{^(?:(?:https?|git|ssh):[^:]|(?:[-_.A-Za-z0-9]+@)?[-_.A-Za-z0-9]+:(?!:|//))}) {
-+			print STDERR "potentially unsafe git URL, may fail, touch local files or execute arbitrary code\n";
-+			return 1;
-+		}
-+		# Reject cloning local directories too, webcheckout is for remote repos
-+		doit(qw(git -c protocol.file.allow=user clone --), $git_url, $destdir)
-+	},
-+	svn => sub { doit(qw(svn checkout --), shift, $destdir) },
-+	bzr => sub { doit(qw(bzr branch --), shift, $destdir) },
- );
--- 
-2.11.0
-

gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch

@@ -1,5 +1,6 @@
 GDB responds with some overly detailed lines - which makes the tests fail.
 Patch rust to accept those instead.
+See <https://github.com/rust-lang/rust/issues/54178>.
 diff -ur orig/rustc-1.25.0-src/src/test/debuginfo/generic-enum-with-different-disr-sizes.rs rustc-1.25.0-src/src/test/debuginfo/generic-enum-with-different-disr-sizes.rs
 --- orig/rustc-1.25.0-src/src/test/debuginfo/generic-enum-with-different-disr-sizes.rs	2018-09-13 10:24:33.775565159 +0200
 +++ rustc-1.25.0-src/src/test/debuginfo/generic-enum-with-different-disr-sizes.rs	2018-09-13 10:25:56.322513658 +0200
@@ -92,3 +93,19 @@ diff -ur orig/rustc-1.25.0-src/src/test/debuginfo/generic-tuple-style-enum.rs ru
  
  // gdb-command:print univariant
  // gdbg-check:$4 = {{__0 = -1}}
+--- orig/rustc-1.25.0-src/src/test/debuginfo/nil-enum.rs	2018-09-13 10:24:33.783565071 +0200
++++ rustc-1.25.0-src/src/test/debuginfo/nil-enum.rs	2018-10-26 18:19:20.404564587 +0200
+@@ -17,11 +17,11 @@
+ 
+ // gdb-command:print first
+ // gdbg-check:$1 = {<No data fields>}
+-// gdbr-check:$1 = <error reading variable>
++// gdbr-check:$1 = nil_enum::ANilEnum
+ 
+ // gdb-command:print second
+ // gdbg-check:$2 = {<No data fields>}
+-// gdbr-check:$2 = <error reading variable>
++// gdbr-check:$2 = nil_enum::AnotherNilEnum
+ 
+ #![allow(unused_variables)]
+ #![feature(omit_gdb_pretty_printer_section)]

gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch

@@ -0,0 +1,25 @@
+From b9ca108fcae2b738ca3f0c88c84ae5dc5a6f843f Mon Sep 17 00:00:00 2001
+From: Tim Ryan <id@timryan.org>
+Date: Mon, 14 May 2018 06:22:21 -0400
+Subject: [PATCH] Support reproducible builds by forcing window.search to use
+ stable key ordering. (#692)
+See <https://github.com/rust-lang-nursery/mdBook/pull/692>
+---
+ src/vendor/mdbook/src/renderer/html_handlebars/search.rs | 4 ++++
+ 1 file changed, 4 insertions(+)
+
+diff --git a/src/vendor/mdbook/src/renderer/html_handlebars/search.rs b/src/vendor/mdbook/src/renderer/html_handlebars/search.rs
+index d49772f8b..1ee66a511 100644
+--- a/src/vendor/mdbook/src/renderer/html_handlebars/search.rs
++++ b/src/vendor/mdbook/src/renderer/html_handlebars/search.rs
+@@ -205,6 +205,10 @@ fn write_to_js(index: Index, search_config: &Search) -> Result<String> {
+         searchoptions,
+         index,
+     };
++
++    // By converting to serde_json::Value as an intermediary, we use a
++    // BTreeMap internally and can force a stable ordering of map keys.
++    let json_contents = serde_json::to_value(&json_contents)?;
+     let json_contents = serde_json::to_string(&json_contents)?;
+ 
+     Ok(format!("window.search = {};", json_contents))

gnu/packages/patches/telegram-purple-adjust-test.patch

@@ -0,0 +1,14 @@
+This test incorrectly expects the libpurple search path to initially
+contain exactly one element.  Remove this incorrect assertion.
+
+--- telegram-purple-1.3.1-checkout/test/loadtest.c	2018-10-27 16:25:06.258459600 +0200
++++ telegram-purple-1.3.1-checkout/test/loadtest.c	2018-10-27 16:25:11.830434770 +0200
+@@ -156,7 +156,7 @@ static void tdf_inject_plugin (void) {
+   printf ("Injecting our module into purple_plugins_* ...\n");
+   purple_plugins_init ();
+   GList *search_paths = purple_plugins_get_search_paths ();
+-  assert (!search_paths->prev && !search_paths->next && search_paths->data);
++  assert (!search_paths->prev && search_paths->data);
+   GList *new_paths = g_list_append (search_paths, g_strdup ("bin/"));
+   assert (new_paths == search_paths);
+   // Load "my" path before the default.

gnu/packages/patches/xapian-revert-5489fb2f8.patch

@@ -1,23 +0,0 @@
-Revert this upstream commit which breaks a test case in "notmuch":
-
-https://git.xapian.org/?p=xapian;a=commitdiff;h=5489fb2f838c0f0b0a593b4c17df282a93a1fe5a
-
-See the notmuch FAQ entry:
-
-https://notmuchmail.org/faq/#index12h2
-
-This should be fixed for later releases.
-
-diff --git a/backends/glass/glass_postlist.cc b/xapian-core/backends/glass/glass_postlist.cc
-index 80e578b85..a47f14a68 100644
---- a/backends/glass/glass_postlist.cc
-+++ b/backends/glass/glass_postlist.cc
-@@ -759,7 +759,7 @@ GlassPostList::open_nearby_postlist(const std::string & term_,
-     (void)need_pos;
-     if (term_.empty())
- 	RETURN(NULL);
--    if (!this_db.get() || this_db->postlist_table.is_modified())
-+    if (!this_db.get() || this_db->postlist_table.is_writable())
- 	RETURN(NULL);
-     RETURN(new GlassPostList(this_db, term_, cursor->clone()));
- }

gnu/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch

@@ -1,55 +0,0 @@
-From: Tobias Geerinckx-Rice <me@tobias.gr>
-Date: Mon, 18 Jun 2018 02:37:41 +0200
-Subject: zathura-pdf-mupdf: Link to JPEG libraries.
-
-As of version 0.3.3, zathura-pdf-mupdf no longer links to some required
-JPEG libraries, leading to such errors as:
-
-  $ zathura foo.pdf
-  error: Could not load plugin '/gnu/store/...-profile/lib/zathura/libpdf-mupdf.so' (/gnu/store/...-profile/lib/zathura/libpdf-mupdf.so: undefined symbol: jpeg_resync_to_restart).
-
-The patch below, copied verbatim from Arch[0], fixes that.
-Its description happens to match our reality, too.
-
-[0]: https://git.archlinux.org/svntogit/community.git/tree/trunk?h=packages/zathura-pdf-mupdf
----
-From 3fb0ff750373d45d4f5172ce1d41b74183cd07e8 Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Johannes=20L=C3=B6thberg?= <johannes@kyriasis.com>
-Date: Sat, 24 Mar 2018 14:31:18 +0100
-Subject: [PATCH] Explicitly link against jbig2dec, openjp2, and jpeg
-MIME-Version: 1.0
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-
-Normally these are statically linked into libmupdfthird, but we delete
-those to make mupdf use the system libraries.  Previously
-zathura-pdf-mupdf explicitly linked against them, but this is
-technically incorrect since they are supposed to be in libmupdfthird so
-that was removed.  This commit essentially reverts that in the new build
-system.
-
-Signed-off-by: Johannes Löthberg <johannes@kyriasis.com>
----
- meson.build | 6 +++++-
- 1 file changed, 5 insertions(+), 1 deletion(-)
-
-diff --git a/meson.build b/meson.build
-index 3b0d7b7..ae2fc9c 100644
---- a/meson.build
-+++ b/meson.build
-@@ -22,7 +22,11 @@ cairo = dependency('cairo')
- mupdf = cc.find_library('mupdf')
- mupdfthird = cc.find_library('mupdfthird')
- 
--build_dependencies = [zathura, girara, glib, cairo, mupdf, mupdfthird]
-+jbig2dec = cc.find_library('jbig2dec')
-+openjp2 = cc.find_library('openjp2')
-+jpeg = cc.find_library('jpeg')
-+
-+build_dependencies = [zathura, girara, glib, cairo, mupdf, mupdfthird, jbig2dec, openjp2, jpeg]
- 
- # defines
- defines = [
--- 
-2.16.3
-

gnu/packages/pdf.scm

@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2013, 2015, 2016 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
-;;; Copyright © 2014, 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2014, 2015, 2016, 2018 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
 ;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2016 Nils Gillmann <ng0@n0.is>
@@ -34,6 +34,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module (guix utils)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system cmake)
@@ -58,6 +59,7 @@
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages gnupg)
+  #:use-module (gnu packages gstreamer)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages image)
   #:use-module (gnu packages imagemagick)
@@ -417,17 +419,15 @@ using the DjVuLibre library.")
 (define-public zathura-pdf-mupdf
   (package
     (name "zathura-pdf-mupdf")
-    (version "0.3.3")
+    (version "0.3.4")
     (source (origin
               (method url-fetch)
               (uri
                (string-append "https://pwmt.org/projects/zathura-pdf-mupdf"
                               "/download/zathura-pdf-mupdf-" version ".tar.xz"))
-              (patches
-               (search-patches "zathura-pdf-mupdf-link-to-jpeg-libraries.patch"))
               (sha256
                (base32
-                "1zbdqimav4wfgimpy3nfzl10qj7vyv23rdy2z5z7z93jwbp2rc2j"))))
+                "166d5nz47ixzwj4pixsd5fd9qvjf5v34cdqi3p72vr23pswk2hyn"))))
     (native-inputs `(("pkg-config" ,pkg-config)))
     (inputs
      `(("jbig2dec" ,jbig2dec)
@@ -439,17 +439,9 @@ using the DjVuLibre library.")
     (build-system meson-build-system)
     (arguments
      `(#:tests? #f                      ; package does not contain tests
-       #:phases
+       #:configure-flags (list (string-append "-Dplugindir="
-       (modify-phases %standard-phases
+                                              (assoc-ref %outputs "out")
-         (add-after 'unpack 'patch-plugin-directory
+                                              "/lib/zathura"))))
-           ;; Something of a regression in 0.3.3: the new Meson build system
-           ;; now hard-codes an incorrect plugin directory.  Fix it.
-           (lambda* (#:key outputs #:allow-other-keys)
-             (substitute* "meson.build"
-               (("(install_dir:).*" _ key)
-                (string-append key
-                               "'" (assoc-ref outputs "out") "/lib/zathura'\n")))
-             #t)))))
     (home-page "https://pwmt.org/projects/zathura-pdf-mupdf/")
     (synopsis "PDF support for zathura (mupdf backend)")
     (description "The zathura-pdf-mupdf plugin adds PDF support to zathura
@@ -598,7 +590,7 @@ extracting content or merging files.")
 (define-public mupdf
   (package
     (name "mupdf")
-    (version "1.13.0")
+    (version "1.14.0")
     (source
       (origin
         (method url-fetch)
@@ -606,9 +598,17 @@ extracting content or merging files.")
                             name "-" version "-source.tar.xz"))
         (sha256
          (base32
-          "0129k92bav692l6lyw10ryldx7h2f9khjpgnp3f3n4fdsph9hrkl"))
+          "1psnz02w5p7wc1s1ma7vvjmkjfy641xvsh9ykaqzkk84dflnjgk0"))
         (modules '((guix build utils)))
-        (snippet '(begin (delete-file-recursively "thirdparty") #t))))
+        (snippet
+         ;; We keep lcms2 since it is different than our lcms.
+         '(begin
+            (for-each
+              (lambda (dir)
+                (delete-file-recursively (string-append "thirdparty/" dir)))
+              '("curl" "freeglut" "freetype" "harfbuzz" "jbig2dec"
+                "libjpeg" "mujs" "openjpeg" "zlib"))
+                #t))))
     (build-system gnu-build-system)
     (inputs
       `(("curl" ,curl)
@@ -629,6 +629,8 @@ extracting content or merging files.")
       '(#:tests? #f ; no check target
         #:make-flags (list "CC=gcc"
                            "XCFLAGS=-fpic"
+                           "USE_SYSTEM_LIBS=yes"
+                           "USE_SYSTEM_MUJS=yes"
                            (string-append "prefix=" (assoc-ref %outputs "out")))
         #:phases (modify-phases %standard-phases
                   (delete 'configure))))
@@ -643,7 +645,11 @@ listing the table of contents and hyperlinks.
 The library ships with a rudimentary X11 viewer, and a set of command
 line tools for batch rendering @command{pdfdraw}, rewriting files
 @command{pdfclean}, and examining the file structure @command{pdfshow}.")
-    (license license:agpl3+)))
+    (license (list license:agpl3+
+                   license:bsd-3 ; resources/cmaps
+                   license:x11 ; thirdparty/lcms2
+                   license:silofl1.1 ; resources/fonts/{han,noto,sil,urw}
+                   license:asl2.0)))) ; resources/fonts/droid
 
 (define-public qpdf
   (package
@@ -1012,3 +1018,41 @@ Support some GNU grep options as file name output, page number output,
 optional case insensitivity, count occurrences, color highlights and search in
 multiple files.")
     (license license:gpl2+)))
+
+(define-public pdfpc
+  (package
+    (name "pdfpc")
+    (version "4.2.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/pdfpc/pdfpc.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1rmsrpf5vlqhnyyrhq8apndny88ld2qvfjx6258653pqbimv7mx5"))))
+    (build-system cmake-build-system)
+    (arguments '(#:tests? #f))          ; no test target
+    (inputs
+     `(("cairo" ,cairo)
+       ("gtk+" ,gtk+)
+       ("gstreamer" ,gstreamer)
+       ("gst-plugins-base" ,gst-plugins-base)
+       ("libgee" ,libgee)
+       ("poppler" ,poppler)
+       ("pango" ,pango)
+       ("vala" ,vala)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (home-page "https://pdfpc.github.io/")
+    (synopsis "Presenter console with multi-monitor support for PDF files")
+    (description
+     "pdfpc is a presentation viewer application which uses multi-monitor
+output to provide meta information to the speaker during the presentation.  It
+is able to show a normal presentation window on one screen, while showing a
+more sophisticated overview on the other one providing information like a
+picture of the next slide, as well as the left over time till the end of the
+presentation.  The input files processed by pdfpc are PDF documents.")
+    (license license:gpl2+)))

gnu/packages/photo.scm

@@ -131,14 +131,14 @@ data as produced by digital cameras.")
 (define-public libgphoto2
   (package
     (name "libgphoto2")
-    (version "2.5.19")
+    (version "2.5.20")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/gphoto/libgphoto/"
                                   version "/libgphoto2-" version ".tar.bz2"))
               (sha256
                (base32
-                "0qrcc6kajbfb237paxrl904vvwl7hd8mnqvjw00j6m5qwd93wlk2"))))
+                "03wbwsb4v7yay8g5ni7pzmkbrh7qnqx977bddjpxsp9f1qag03z1"))))
     (build-system gnu-build-system)
     (native-inputs `(("pkg-config" ,pkg-config)))
     (inputs
@@ -206,7 +206,7 @@ MTP, and much more.")
 (define-public perl-image-exiftool
   (package
     (name "perl-image-exiftool")
-    (version "11.01")
+    (version "11.11")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -214,7 +214,7 @@ MTP, and much more.")
                     version ".tar.gz"))
               (sha256
                (base32
-                "175w34n73mypdpbaqj2vgqsfp59yvfrn8k7zmx4cawnp895bypvh"))))
+                "1szg1k82nz88pp5n7lg71ja7q3hh5i5f9bcbb7m482dwrmsywkp6"))))
     (build-system perl-build-system)
     (arguments
      '(#:phases

gnu/packages/pretty-print.scm

@@ -244,7 +244,7 @@ seen in a terminal.")
 (define-public highlight
   (package
     (name "highlight")
-    (version "3.42")
+    (version "3.47")
     (source
      (origin
        (method url-fetch)
@@ -252,7 +252,7 @@ seen in a terminal.")
                            version ".tar.bz2"))
        (sha256
         (base32
-         "07iihzy8ckzdrxqd6bzbij4hy4mmlixibjnjviqfihd0hh1q30m5"))))
+         "0xidf8755lnx55x6p4ajgg4l145akjqswny41483fvg5lpa41i6f"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f                      ; no tests

gnu/packages/python-crypto.scm

@@ -637,7 +637,7 @@ PKCS#8, PKCS#12, PKCS#5, X.509 and TSP.")
 (define-public python-pynacl
   (package
     (name "python-pynacl")
-    (version "1.2.1")
+    (version "1.3.0")
     (source
      (origin
        (method url-fetch)
@@ -648,7 +648,7 @@ PKCS#8, PKCS#12, PKCS#5, X.509 and TSP.")
                         #t))
        (sha256
         (base32
-         "1ada3qr83cliap6dk897vnvjkynij1kjqbwizdbgarazlyh8zlz0"))))
+         "0330wyvggm19xhmwmz9rrr97lzbv3siwfy50gmax3vvgs7nh0q8c"))))
     (build-system python-build-system)
     (arguments
      `(#:phases

gnu/packages/python-web.scm

@@ -60,6 +60,7 @@
   #:use-module (gnu packages python-crypto)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages time)
+  #:use-module (gnu packages web)
   #:use-module (gnu packages xml)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (srfi srfi-1))
@@ -255,6 +256,43 @@ other HTTP libraries.")
 (define-public python2-httplib2
   (package-with-python2 python-httplib2))
 
+(define-public python-mechanicalsoup
+  (package
+    (name "python-mechanicalsoup")
+    (version "0.11.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "MechanicalSoup" version))
+       (sha256
+        (base32 "0k59wwk75q7nz6i6gynvzhagy02ql0bv7py3qqcwgjw7607yq4i7"))))
+    (build-system python-build-system)
+    (arguments
+     ;; TODO: Enable tests when python-flake8@3.5 hits master.
+     `(#:tests? #f))
+    (propagated-inputs
+     `(("python-beautifulsoup4" ,python-beautifulsoup4)
+       ("python-lxml" ,python-lxml)
+       ("python-requests" ,python-requests)
+       ("python-six" ,python-six)))
+    ;; (native-inputs
+    ;;  ;; For tests.
+    ;;  `(("python-pytest-flake8" ,python-pytest-flake8)
+    ;;    ("python-pytest-httpbin" ,python-pytest-httpbin)
+    ;;    ("python-pytest-mock" ,python-pytest-mock)
+    ;;    ("python-pytest-runner" ,python-pytest-runner)
+    ;;    ("python-requests-mock" ,python-requests-mock)))
+    (home-page "https://mechanicalsoup.readthedocs.io/")
+    (synopsis "Python library for automating website interaction")
+    (description
+     "MechanicalSoup is a Python library for automating interaction with
+websites.  It automatically stores and sends cookies, follows redirects, and can
+follow links and submit forms.  It doesn’t do JavaScript.")
+    (license license:expat)))
+
+(define-public python2-mechanicalsoup
+  (package-with-python2 python-mechanicalsoup))
+
 (define-public python-sockjs-tornado
   (package
     (name "python-sockjs-tornado")

gnu/packages/python.scm

@@ -31,7 +31,7 @@
 ;;; Copyright © 2016 Dylan Jeffers <sapientech@sapientech@openmailbox.org>
 ;;; Copyright © 2016, 2017 Alex Vong <alexvong1995@gmail.com>
 ;;; Copyright © 2016, 2017, 2018 Arun Isaac <arunisaac@systemreboot.net>
-;;; Copyright © 2016, 2017 Julien Lepiller <julien@lepiller.eu>
+;;; Copyright © 2016, 2017, 2018 Julien Lepiller <julien@lepiller.eu>
 ;;; Copyright © 2016, 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
 ;;; Copyright © 2017 Carlo Zancanaro <carlo@zancanaro.id.au>
@@ -2798,14 +2798,14 @@ interested parties to subscribe to events, or \"signals\".")
 (define-public pelican
   (package
     (name "pelican")
-    (version "3.6.3")
+    (version "3.7.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pelican" version))
        (sha256
         (base32
-         "1hn94rb4q3zmcq16in055xikal4dba5hfx3zznq7warllcgc9f8k"))))
+         "12spygavv9b6xpb5pgp7f0p3z0mms60nx6zrpx1yfkj68zz4flra"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-feedgenerator" ,python-feedgenerator)
@@ -2818,7 +2818,7 @@ interested parties to subscribe to events, or \"signals\".")
        ("python-six" ,python-six)
        ("python-dateutil" ,python-dateutil)
        ("python-markdown" ,python-markdown)))
-    (home-page "http://getpelican.com/")
+    (home-page "https://getpelican.com/")
     (arguments
      `(;; XXX Requires a lot more packages to do unit tests :P
        #:tests? #f
@@ -12374,14 +12374,14 @@ validating Swagger API specifications.")
 (define-public python-apache-libcloud
   (package
     (name "python-apache-libcloud")
-    (version "2.0.0")
+    (version "2.3.0")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "apache-libcloud" version))
         (sha256
           (base32
-            "1a71z02ckcxld72k4qgmdnkjan52c4wczncs3p2mp5yafh7dsan7"))))
+            "15xg79ad4g2xrk081ylvj41k5hmg9hl1xvbmb5hd0fqn08wfwbhf"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -12410,6 +12410,11 @@ class ShellOutSSHClientTests")
                (("'.xf0.x90.x8d.x88'") "b'\\xF0\\x90\\x8D\\x88'")
                (("'.xF0', '.x90', '.x8D', '.x88'")
                 "b'\\xF0', b'\\x90', b'\\x8D', b'\\x88'"))
+             #t))
+         (add-before 'check 'copy-secret
+           (lambda _
+             (copy-file "libcloud/test/secrets.py-dist"
+                        "libcloud/test/secrets.py")
              #t)))))
     (inputs
      `(("openssh" ,openssh)))
@@ -12419,6 +12424,8 @@ class ShellOutSSHClientTests")
     (native-inputs
      `(("python-lockfile" ,python-lockfile)
        ("python-mock" ,python-mock)
+       ("python-pytest" ,python-pytest)
+       ("python-pytest-runner" ,python-pytest-runner)
        ("python-requests-mock" ,python-requests-mock)))
     (home-page "https://libcloud.apache.org/")
     (synopsis "Unified Cloud API")
@@ -12830,15 +12837,17 @@ embeddable JavaScript engine.")
 (define-public python-jsonrpclib-pelix
   (package
     (name "python-jsonrpclib-pelix")
-    (version "0.3.1")
+    (version "0.3.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "jsonrpclib-pelix" version))
        (sha256
         (base32
-         "1qs95vxplxwspbrqy8bvc195s58iy43qkf75yrjfql2sim8b25sl"))))
+         "0f83z5zi7w32vprhk1dyc94ir1bh4hdd57bjdbwkq9ykng8qilhl"))))
     (build-system python-build-system)
+    (arguments
+     `(#:tests? #f))                    ; no tests in PyPI tarball
     (home-page "https://github.com/tcalmant/jsonrpclib/")
     (synopsis "JSON-RPC 2.0 client library for Python")
     (description
@@ -14453,14 +14462,14 @@ This Python package wraps the Blosc library.")
 (define-public python-partd
   (package
     (name "python-partd")
-    (version "0.3.8")
+    (version "0.3.9")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "partd" version))
        (sha256
         (base32
-         "03s0i5qfgkx6y24bmfgyd5hnsjznkbbfafwb2khf7k9790f1yab7"))))
+         "0sz6rwlnl4fqq220pyz863cnv0gjdxl4m7lscl71ishl5z0xkmhz"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-blosc" ,python-blosc)
@@ -14523,14 +14532,14 @@ run on top of the dynamic task schedulers. ")
 (define-public python-ilinkedlist
   (package
     (name "python-ilinkedlist")
-    (version "0.1.0")
+    (version "0.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "ilinkedlist" version))
        (sha256
         (base32
-         "063c2gm4jkgkv0nsg7mrc8y0w82ms98l4xchmbrvr68cscglhk69"))))
+         "0klb846q5vs62d8f89my7wan1sji4yjj6pjhjch9dha3p8vlncd2"))))
     (build-system python-build-system)
     (native-inputs `(("python-pytest" ,python-pytest)))
     (inputs `(("python" ,python)))
@@ -14544,3 +14553,56 @@ can be retrieved in constant time.  Some of the terminology is inspired by
 LISP.  It is possible to create an improper list by creating a @code{Pair}
 with a non-list @code{cdr}.")
     (license license:gpl3+)))
+
+(define-public python-readlike
+  (package
+    (name "python-readlike")
+    (version "0.1.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "readlike" version))
+       (sha256
+        (base32 "027w8fvi50ksl57q0a7kb5zvmq8jxaawnviib1jdqw0p3igvm1j4"))))
+    (build-system python-build-system)
+    (home-page "https://github.com/jangler/readlike")
+    (synopsis "GNU Readline-like line editing module")
+    (description
+     "This Python module provides line editing functions similar to the default
+Emacs-style ones of GNU Readline.  Unlike the Python standard library's
+@code{readline} package, this one allows access to those capabilties in settings
+outside of a standard command-line interface.  It is especially well-suited to
+interfacing with Urwid, due to a shared syntax for describing key inputs.
+
+Currently, all stateless Readline commands are implemented.  Yanking and history
+are not supported.")
+    (license license:expat)))
+
+(define-public python2-readlike
+  (package-with-python2 python-readlike))
+
+(define-public python-reparser
+  (package
+    (name "python-reparser")
+    (version "1.4.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "ReParser" version))
+       (sha256
+        (base32 "0nniqb69xr0fv7ydlmrr877wyyjb61nlayka7xr08vlxl9caz776"))))
+    (build-system python-build-system)
+    (home-page "https://github.com/xmikos/reparser")
+    (synopsis "Simple lexer/parser for inline markup based on regular expressions")
+    (description
+     "This Python library provides a simple lexer/parser for inline markup based
+on regular expressions.")
+    (license license:expat)))
+
+(define-public python2-reparser
+  (let ((reparser (package-with-python2
+                   (strip-python2-variant python-reparser))))
+    (package (inherit reparser)
+             (propagated-inputs
+              `(("python2-enum34" ,python2-enum34)
+                ,@(package-propagated-inputs reparser))))))

gnu/packages/qt.scm

@@ -64,9 +64,11 @@
   #:use-module (gnu packages ruby)
   #:use-module (gnu packages sdl)
   #:use-module (gnu packages tls)
+  #:use-module (gnu packages vulkan)
   #:use-module (gnu packages xdisorg)
   #:use-module (gnu packages xorg)
-  #:use-module (gnu packages xml))
+  #:use-module (gnu packages xml)
+  #:use-module (srfi srfi-1))
 
 (define-public grantlee
   (package
@@ -105,7 +107,7 @@ system, and the core design of Django is reused in Grantlee.")
 (define-public qt
   (package
     (name "qt")
-    (version "5.11.1")
+    (version "5.11.2")
     (outputs '("out" "examples"))
     (source (origin
              (method url-fetch)
@@ -118,7 +120,7 @@ system, and the core design of Django is reused in Grantlee.")
                  version ".tar.xz"))
              (sha256
               (base32
-               "0azva1wx298jh0xskymz8jic83yhxs1xfxf321wqd5lwiyq2qq1r"))
+               "10faac59jvz6dxxljdkaknlxazpnaxgvqdcszabfbbkc1f24n466"))
              (modules '((guix build utils)))
              (snippet
               '(begin
@@ -135,7 +137,7 @@ system, and the core design of Django is reused in Grantlee.")
                   (lambda (dir)
                     (delete-file-recursively (string-append "qtbase/src/3rdparty/" dir)))
                   (list "double-conversion" "freetype" "harfbuzz-ng"
-                        "libpng" "libjpeg" "pcre2" "xcb"
+                        "libpng" "libjpeg" "pcre2" "sqlite" "xcb"
                         "xkbcommon" "zlib"))
                 (for-each
                   (lambda (dir)
@@ -206,7 +208,7 @@ system, and the core design of Django is reused in Grantlee.")
        ("postgresql" ,postgresql)
        ("pulseaudio" ,pulseaudio)
        ("pcre2" ,pcre2)
-       ;("sqlite" ,sqlite)
+       ("sqlite" ,sqlite-with-column-metadata)
        ("udev" ,eudev)
        ("unixodbc" ,unixodbc)
        ("wayland" ,wayland)
@@ -224,6 +226,7 @@ system, and the core design of Django is reused in Grantlee.")
        ("pkg-config" ,pkg-config)
        ("python" ,python-2)
        ("ruby" ,ruby)
+       ("vulkan-headers" ,vulkan-headers)
        ("which" ,(@ (gnu packages base) which))))
     (arguments
      `(#:parallel-build? #f ; Triggers race condition in qtbase module on Hydra.
@@ -246,51 +249,51 @@ system, and the core design of Django is reused in Grantlee.")
                  (("/bin/ls") (which "ls")))
                ;; do not pass "--enable-fast-install", which makes the
                ;; configure process fail
-               (zero? (system*
+               (invoke
-                       "./configure"
+                 "./configure"
-                       "-verbose"
+                 "-verbose"
-                       "-prefix" out
+                 "-prefix" out
-                       "-docdir" (string-append out "/share/doc/qt5")
+                 "-docdir" (string-append out "/share/doc/qt5")
-                       "-headerdir" (string-append out "/include/qt5")
+                 "-headerdir" (string-append out "/include/qt5")
-                       "-archdatadir" (string-append out "/lib/qt5")
+                 "-archdatadir" (string-append out "/lib/qt5")
-                       "-datadir" (string-append out "/share/qt5")
+                 "-datadir" (string-append out "/share/qt5")
-                       "-examplesdir" (string-append
+                 "-examplesdir" (string-append
-                                        examples "/share/doc/qt5/examples") ; 151MiB
+                                  examples "/share/doc/qt5/examples") ; 151MiB
-                       "-opensource"
+                 "-opensource"
-                       "-confirm-license"
+                 "-confirm-license"
 
-                       ;; These features require higher versions of Linux than the
+                 ;; These features require higher versions of Linux than the
-                       ;; minimum version of the glibc.  See
+                 ;; minimum version of the glibc.  See
-                       ;; src/corelib/global/minimum-linux_p.h.  By disabling these
+                 ;; src/corelib/global/minimum-linux_p.h.  By disabling these
-                       ;; features Qt5 applications can be used on the oldest
+                 ;; features Qt5 applications can be used on the oldest
-                       ;; kernels that the glibc supports, including the RHEL6
+                 ;; kernels that the glibc supports, including the RHEL6
-                       ;; (2.6.32) and RHEL7 (3.10) kernels.
+                 ;; (2.6.32) and RHEL7 (3.10) kernels.
-                       "-no-feature-getentropy"  ; requires Linux 3.17
+                 "-no-feature-getentropy"  ; requires Linux 3.17
-                       "-no-feature-renameat2"   ; requires Linux 3.16
+                 "-no-feature-renameat2"   ; requires Linux 3.16
 
-                       ;; Do not build examples; for the time being, we
+                 ;; Do not build examples; for the time being, we
-                       ;; prefer to save the space and build time.
+                 ;; prefer to save the space and build time.
-                       "-no-compile-examples"
+                 "-no-compile-examples"
-                       ;; Most "-system-..." are automatic, but some use
+                 ;; Most "-system-..." are automatic, but some use
-                       ;; the bundled copy by default.
+                 ;; the bundled copy by default.
-                       ;"-system-sqlite"
+                 "-system-sqlite"
-                       "-system-harfbuzz"
+                 "-system-harfbuzz"
-                       "-system-pcre"
+                 "-system-pcre"
-                       ;; explicitly link with openssl instead of dlopening it
+                 ;; explicitly link with openssl instead of dlopening it
-                       "-openssl-linked"
+                 "-openssl-linked"
-                       ;; explicitly link with dbus instead of dlopening it
+                 ;; explicitly link with dbus instead of dlopening it
-                       "-dbus-linked"
+                 "-dbus-linked"
-                       ;; don't use the precompiled headers
+                 ;; don't use the precompiled headers
-                       "-no-pch"
+                 "-no-pch"
-                       ;; drop special machine instructions not supported
+                 ;; drop special machine instructions not supported
-                       ;; on all instances of the target
+                 ;; on all instances of the target
-                       ,@(if (string-prefix? "x86_64"
+                 ,@(if (string-prefix? "x86_64"
-                                             (or (%current-target-system)
+                                       (or (%current-target-system)
-                                                 (%current-system)))
+                                           (%current-system)))
-                             '()
+                       '()
-                             '("-no-sse2"))
+                       '("-no-sse2"))
-                       "-no-mips_dsp"
+                 "-no-mips_dsp"
-                       "-no-mips_dspr2")))))
+                 "-no-mips_dspr2"))))
            (add-after 'install 'patch-mkspecs
              (lambda* (#:key outputs #:allow-other-keys)
                (let* ((out (assoc-ref outputs "out"))
@@ -401,10 +404,16 @@ system, and the core design of Django is reused in Grantlee.")
               ;; Remove webkit module, which is not built.
               '(begin (delete-file-recursively "src/3rdparty/webkit")
                       #t))))
-    (inputs `(,@(alist-delete "harfbuzz"
+    (inputs
-                              (alist-delete "libjpeg" (package-inputs qt)))
+     `(,@(fold alist-delete
-              ("libjepg" ,libjpeg-8)
+               (package-inputs qt)
-              ("libsm" ,libsm)))
+               '("harfbuzz" "libjpeg"))
+       ("libjpeg" ,libjpeg-8)
+       ("libsm" ,libsm)))
+    (native-inputs
+     `(,@(fold alist-delete
+               (package-native-inputs qt)
+               '("vulkan-headers"))))
 
     ;; Note: there are 37 MiB of examples and a '-exampledir' configure flags,
     ;; but we can't make them a separate output because "out" and "examples"
@@ -421,48 +430,53 @@ system, and the core design of Django is reused in Grantlee.")
                   (doc (assoc-ref outputs "doc")))
               (substitute* '("configure")
                 (("/bin/pwd") (which "pwd")))
+              (substitute* "src/corelib/global/global.pri"
+                (("/bin/ls") (which "ls")))
 
-              (zero? (system*
+              (invoke
-                      "./configure"
+                "./configure"
-                      "-verbose"
+                "-verbose"
-                      "-prefix" out
+                "-prefix" out
-                      ;; Note: Don't pass '-docdir' since 'qmake' and
+                "-nomake" "examples demos"
-                      ;; libQtCore would record its value, thereby defeating
+                ;; Note: Don't pass '-docdir' since 'qmake' and
-                      ;; the whole point of having a separate output.
+                ;; libQtCore would record its value, thereby defeating
-                      "-datadir" (string-append out "/share/qt-" ,version
+                ;; the whole point of having a separate output.
-                                                "/data")
+                "-datadir" (string-append out "/share/qt-" ,version
-                      "-importdir" (string-append out "/lib/qt-4"
+                                          "/data")
-                                                  "/imports")
+                "-importdir" (string-append out "/lib/qt-4"
-                      "-plugindir" (string-append out "/lib/qt-4"
+                                            "/imports")
-                                                  "/plugins")
+                "-plugindir" (string-append out "/lib/qt-4"
-                      "-translationdir" (string-append out "/share/qt-" ,version
+                                            "/plugins")
-                                                       "/translations")
+                "-translationdir" (string-append out "/share/qt-" ,version
-                      "-demosdir"    (string-append out "/share/qt-" ,version
+                                                 "/translations")
-                                                    "/demos")
+                "-demosdir"    (string-append out "/share/qt-" ,version
-                      "-examplesdir" (string-append out "/share/qt-" ,version
+                                              "/demos")
-                                                    "/examples")
+                "-examplesdir" (string-append out "/share/qt-" ,version
-                      "-opensource"
+                                              "/examples")
-                      "-confirm-license"
+                "-opensource"
-                      ;; explicitly link with dbus instead of dlopening it
+                "-confirm-license"
-                      "-dbus-linked"
+                ;; explicitly link with dbus instead of dlopening it
-                      ;; Skip the webkit module; it fails to build on armhf
+                "-dbus-linked"
-                      ;; and, apart from that, may pose security risks.
+                ;; Skip the webkit module; it fails to build on armhf
-                      "-no-webkit"
+                ;; and, apart from that, may pose security risks.
-                      ;; drop special machine instructions not supported
+                "-no-webkit"
-                      ;; on all instances of the target
+                ;; don't use the precompiled headers
-                      ,@(if (string-prefix? "x86_64"
+                "-no-pch"
-                                            (or (%current-target-system)
+                ;; drop special machine instructions not supported
-                                                (%current-system)))
+                ;; on all instances of the target
-                            '()
+                ,@(if (string-prefix? "x86_64"
-                            '("-no-mmx"
+                                      (or (%current-target-system)
-                              "-no-3dnow"
+                                          (%current-system)))
-                              "-no-sse"
+                      '()
-                              "-no-sse2"))
+                      '("-no-mmx"
-                      "-no-sse3"
+                        "-no-3dnow"
-                      "-no-ssse3"
+                        "-no-sse"
-                      "-no-sse4.1"
+                        "-no-sse2"))
-                      "-no-sse4.2"
+                "-no-sse3"
-                      "-no-avx")))))
+                "-no-ssse3"
+                "-no-sse4.1"
+                "-no-sse4.2"
+                "-no-avx"))))
          (add-after
           'install 'move-doc
           (lambda* (#:key outputs #:allow-other-keys)
@@ -483,7 +497,7 @@ system, and the core design of Django is reused in Grantlee.")
 (define-public qtbase
   (package
     (name "qtbase")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -492,7 +506,7 @@ system, and the core design of Django is reused in Grantlee.")
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0ipv18ypbgpxhh49rfplqmflskmnhhwj1bjr5hrwi0jpvar4gl50"))
+               "01q1rn5rp9biq3z38953z2hgm4nirvp2jfv8wg7isnld8v1yg0b3"))
              ;; Use TZDIR to avoid depending on package "tzdata".
              (patches (search-patches "qtbase-use-TZDIR.patch"
                                       "qtbase-glibc-compat.patch"))
@@ -504,7 +518,7 @@ system, and the core design of Django is reused in Grantlee.")
                   (lambda (dir)
                     (delete-file-recursively (string-append "src/3rdparty/" dir)))
                   (list "double-conversion" "freetype" "harfbuzz-ng"
-                        "libpng" "libjpeg" "pcre2" "xcb"
+                        "libpng" "libjpeg" "pcre2" "sqlite" "xcb"
                         "xkbcommon" "zlib"))
                 #t))))
     (build-system gnu-build-system)
@@ -546,7 +560,7 @@ system, and the core design of Django is reused in Grantlee.")
        ("pcre2" ,pcre2)
        ("postgresql" ,postgresql)
        ("pulseaudio" ,pulseaudio)
-       ;("sqlite" ,sqlite)
+       ("sqlite" ,sqlite-with-column-metadata)
        ("unixodbc" ,unixodbc)
        ("xcb-util" ,xcb-util)
        ("xcb-util-image" ,xcb-util-image)
@@ -561,6 +575,7 @@ system, and the core design of Django is reused in Grantlee.")
        ("perl" ,perl)
        ("pkg-config" ,pkg-config)
        ("python" ,python-2)
+       ("vulkan-headers" ,vulkan-headers)
        ("ruby" ,ruby)))
     (arguments
      `(#:phases
@@ -616,10 +631,7 @@ system, and the core design of Django is reused in Grantlee.")
                  "-no-compile-examples"
                  ;; Most "-system-..." are automatic, but some use
                  ;; the bundled copy by default.
-                 ;; System sqlite fails on 5.10+
+                 "-system-sqlite"
-                 ;;.obj/qsql_sqlite.o: In function `QSQLiteResultPrivate::initColumns(bool)':
-                 ;;qsql_sqlite.cpp:(.text+0x190c): undefined reference to `sqlite3_column_table_name16'
-                 ;"-system-sqlite"
                  "-system-harfbuzz"
                  "-system-pcre"
                  ;; explicitly link with openssl instead of dlopening it
@@ -726,7 +738,7 @@ developers using C++ or QML, a CSS & JavaScript like language.")
 (define-public qtsvg
   (package (inherit qtbase)
     (name "qtsvg")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -735,7 +747,7 @@ developers using C++ or QML, a CSS & JavaScript like language.")
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0drhig0jcss3cf01aqfmafajf8gzf6bh468g1ikyrkh46czgyshx"))))
+               "0rni3cdcli91v7k8ra9s9phpznvkza8qqvcrv9yyfrmlapwbn5mw"))))
     (propagated-inputs `())
     (native-inputs `(("perl" ,perl)))
     (inputs
@@ -801,7 +813,7 @@ HostData=lib/qt5
 (define-public qtimageformats
   (package (inherit qtsvg)
     (name "qtimageformats")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -810,7 +822,7 @@ HostData=lib/qt5
                                  version ".tar.xz"))
              (sha256
               (base32
-               "05jnyrq7klr3mdiz0r9c151vl829yc8y9cxfbw5dwbp1rkndwl7b"))
+               "0s1s33k0wrnf9fi1wlm1kaq9hs1fx89597nhk53vzdfha42x3r97"))
              (modules '((guix build utils)))
              (snippet
               '(begin
@@ -832,7 +844,7 @@ support for MNG, TGA, TIFF and WBMP image formats.")))
 (define-public qtx11extras
   (package (inherit qtsvg)
     (name "qtx11extras")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -841,7 +853,7 @@ support for MNG, TGA, TIFF and WBMP image formats.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0rccpmhz48kq4xs441lj9mnwpbi6kxwl8y7dj7w7g5zvpv41kwmw"))))
+               "12cha7pd3cjx7zr0l7rbi1j2pfwmfpdwc7w3dsqbyi1d0mhwl1zl"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
@@ -856,7 +868,7 @@ from within Qt 5.")))
 (define-public qtxmlpatterns
   (package (inherit qtsvg)
     (name "qtxmlpatterns")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -865,7 +877,7 @@ from within Qt 5.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0n5gacpni019i2872m4b1p5qaqibhszsdl3xhw3xsckvr0hf25v1"))))
+               "0ik7m1a0shjsyzs8n9hfx8m9hy1p3wg505slcs0xznj0pa0gdmaz"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:phases phases)
@@ -885,7 +897,7 @@ xmlpatternsvalidator.")))
 (define-public qtdeclarative
   (package (inherit qtsvg)
     (name "qtdeclarative")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -894,7 +906,7 @@ xmlpatternsvalidator.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0fjg9ii64mhx2ww70rj44cy65rwwkwyjxcm435kwp3v1pzv5xkwy"))))
+               "1kgj6q53rk573yi47j32mn1mfk5ag98zvhv9qgrlb78y0gw8c392"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
@@ -917,7 +929,7 @@ with JavaScript and C++.")))
 (define-public qtconnectivity
   (package (inherit qtsvg)
     (name "qtconnectivity")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -926,7 +938,7 @@ with JavaScript and C++.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0mz6mbf069yqdvi6mcvp6izskcn9wzig4s3dzmygwd430pmx93kk"))))
+               "1ia21llw610wd7licdm81p8zpkrkvkc5yc7y4wplgg6k2jyip42q"))))
     (native-inputs
      `(("perl" ,perl)
        ("pkg-config" ,pkg-config)
@@ -941,7 +953,7 @@ with Bluetooth and NFC.")))
 (define-public qtwebsockets
   (package (inherit qtsvg)
     (name "qtwebsockets")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -950,7 +962,7 @@ with Bluetooth and NFC.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1bj82y3f1nd2adnj3ljfr4vlx4bkgdlm3zvhlsas2lz837vi5aks"))))
+               "13cbr2pffv1hwvm8d8kzask0pyc2j3brgq23vi5i1i70kihrfqdf"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
@@ -968,7 +980,7 @@ consume data received from the server, or both.")))
 (define-public qtsensors
   (package (inherit qtsvg)
     (name "qtsensors")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -977,7 +989,7 @@ consume data received from the server, or both.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1yn065l6kzs3fn74950pkxxglqi55lzk7alf15klsd1wnxc0zsfb"))))
+               "1iv3gmk121myqdr64d9lf2m816ypxrb526gn0ssxx8gp4j4c69qf"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:parallel-tests? _ #f) #f) ; can lead to race condition
@@ -1001,7 +1013,7 @@ recognition API for devices.")))
 (define-public qtmultimedia
   (package (inherit qtsvg)
     (name "qtmultimedia")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1010,7 +1022,7 @@ recognition API for devices.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0369b0mh7sr718l119b07grb1v8xqlq6l4damyd6lrmlj1wbb2zj"))
+               "0vbjrxsdahgbgpc2zcvgg3mpijzd5kknz5clfcw2cq3310yqyq15"))
              (modules '((guix build utils)))
              (snippet
               '(begin
@@ -1052,7 +1064,7 @@ set of plugins for interacting with pulseaudio and GStreamer.")))
 (define-public qtwayland
   (package (inherit qtsvg)
     (name "qtwayland")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1061,7 +1073,7 @@ set of plugins for interacting with pulseaudio and GStreamer.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1sj4lsza48xji1qhmi1wqpx07jgm1mpa95gmd2w1kxw240hbr6p0"))
+               "0wdpxjr3zfmgcfg14zlwd8mjbc191pvlchj1xxd0lj30ldfy2daf"))
              (modules '((guix build utils)))
              (snippet
                ;; The examples try to build and cause the build to fail
@@ -1104,7 +1116,7 @@ compositor libraries.")))
 (define-public qtserialport
   (package (inherit qtsvg)
     (name "qtserialport")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1113,7 +1125,7 @@ compositor libraries.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "18v4pbq7bnmrl81m8s11ksbjlvzbb4kw5py6ji2dhmnm44w9k9sn"))))
+               "0vkgvicm67vds2iqmhnjsqwnx1f8zhbzc31w6q198i0x8b76j6xh"))))
     (native-inputs `(("perl" ,perl)))
     (inputs
      `(("qtbase" ,qtbase)
@@ -1138,7 +1150,7 @@ interacting with serial ports from within Qt.")))
 (define-public qtserialbus
   (package (inherit qtsvg)
     (name "qtserialbus")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1147,7 +1159,7 @@ interacting with serial ports from within Qt.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0jjmdd6vkvs5izqazp1rsrad0b1fzk6knrbdjl37lvcsawyfxfyk"))))
+               "07k4g5qfh657das2f5i6ph0hl4bva13yzlmxnay7qpzqcb0w4x0p"))))
     (inputs
      `(("qtbase" ,qtbase)
        ("qtserialport" ,qtserialport)))
@@ -1159,7 +1171,7 @@ and others.")))
 (define-public qtwebchannel
   (package (inherit qtsvg)
     (name "qtwebchannel")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1168,7 +1180,7 @@ and others.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "11rfjkb4h8dzxfmk889x7kkc73cbk26smc7h62lnh35f2nppd95r"))))
+               "1z02dhrd1h2rpdhww9py9dnhss80xwf45n568y7gr3gay7ldlpwl"))))
     (native-inputs
      `(("perl" ,perl)
        ("qtdeclarative" ,qtdeclarative)
@@ -1183,7 +1195,7 @@ popular web engines, Qt WebKit 2 and Qt WebEngine.")))
 (define-public qtwebglplugin
   (package (inherit qtsvg)
     (name "qtwebglplugin")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1192,7 +1204,7 @@ popular web engines, Qt WebKit 2 and Qt WebEngine.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "108yhi3sj6d1ysmlpka69ivb20mx9h6jpra6yq099i3jw4gc753x"))))
+               "0vazz9yr1qgpcq7p77vg9mrjxy6hjabvwj9irw5l5w7fmsk2ns0n"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:phases phases)
@@ -1218,7 +1230,7 @@ OpenGL ES 2.0 and can be used in HTML5 canvas elements")))
 (define-public qtwebview
   (package (inherit qtsvg)
     (name "qtwebview")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1227,7 +1239,7 @@ OpenGL ES 2.0 and can be used in HTML5 canvas elements")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "18da6a13wpb23vb6mbg9v75gphdf5mjmch7q3v1qjrv2sdwbpjbp"))))
+               "1r30n9vjcgh2cd2iycfwwwpmbz7grrd3iqrc0afwnri3vylnfqil"))))
     (native-inputs
      `(("perl" ,perl)))
     (inputs
@@ -1241,7 +1253,7 @@ native APIs where it makes sense.")))
 (define-public qtlocation
   (package (inherit qtsvg)
     (name "qtlocation")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1250,7 +1262,7 @@ native APIs where it makes sense.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "03vrbymwbn4nqsypcmr4ccqv20nvwdfs9gb01pi3jxr6x0wrlb0p"))))
+               "0kh2c2ahg8xkpvqsva13i35ndsc0x0ypnmd6vix5pm5jvwg9366n"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
@@ -1271,7 +1283,7 @@ positioning and geolocation plugins.")))
 (define-public qttools
   (package (inherit qtsvg)
     (name "qttools")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1280,13 +1292,14 @@ positioning and geolocation plugins.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1zhl8p29mbabf07rhaks13qcm45zdckzymvz9qn95nxfj9piiyxp"))))
+               "1f1iqvksrlgkxdbagb6vvjib3argbv9l7iis6ymb8n0rfwn37s7h"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
     (native-inputs
      `(("perl" ,perl)
-       ("qtdeclarative" ,qtdeclarative)))
+       ("qtdeclarative" ,qtdeclarative)
+       ("vulkan-headers" ,vulkan-headers)))
     (inputs
      `(("mesa" ,mesa)
        ("qtbase" ,qtbase)))
@@ -1298,7 +1311,7 @@ that helps in Qt development.")))
 (define-public qtscript
   (package (inherit qtsvg)
     (name "qtscript")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1307,7 +1320,7 @@ that helps in Qt development.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0z6sb4b9ds5lwkr0sxrnx6nim3aq2qx4a8illjy5vclfdv80yhqw"))
+               "0xprhd1brn30dqf5vy4inqgzpq48i8nlc428x9rr8fk5hdm4dhmj"))
              (patches (search-patches "qtscript-disable-tests.patch"))))
     (native-inputs
      `(("perl" ,perl)
@@ -1322,7 +1335,7 @@ ECMAScript and Qt.")))
 (define-public qtquickcontrols
   (package (inherit qtsvg)
     (name "qtquickcontrols")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1331,7 +1344,7 @@ ECMAScript and Qt.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0mn662j0gkpama7zlrsn4h27sjrk49kpbha1h0zxxyiza5cpzsms"))))
+               "1q11nr85436xzrf4mbrbav306hrz0s2qaclqhhb0g88vzcq2wxww"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
@@ -1346,7 +1359,7 @@ can be used to build complete interfaces in Qt Quick.")))
 (define-public qtquickcontrols2
   (package (inherit qtsvg)
     (name "qtquickcontrols2")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1355,7 +1368,7 @@ can be used to build complete interfaces in Qt Quick.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0hn4kvrkz5ivwrp9p6yzwlw7cn4j72kcpm2nqyi3dbai1px6dc5x"))))
+               "116b5nhmsx898626s37r446yci7kxd3k7xap1dh9spqklkwlj1da"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
@@ -1371,7 +1384,7 @@ not available.")))
 (define-public qtgraphicaleffects
   (package (inherit qtsvg)
     (name "qtgraphicaleffects")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1380,7 +1393,7 @@ not available.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1ws8aj7bq3rxpzjs370dcyqk8a5v1y6fwvrdhf70j8b2d4v75lnr"))))
+               "1zd9wjh2hhd6lby0z3ak0ff6zkbv73hh0drrg9qp2yrgjfismp59"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
@@ -1426,7 +1439,7 @@ backend for QtQuick scene graph.")
 (define-public qtgamepad
   (package (inherit qtsvg)
     (name "qtgamepad")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1435,7 +1448,7 @@ backend for QtQuick scene graph.")
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1n97w9rcbg8mzkvjgn3i8jbfmplp7w0p80ykdchpml47gxk1kwma"))))
+               "076874iyadj7pkprlk24h257nb8i4sni9c6kbixm5zrr2y73fbxf"))))
     (native-inputs
      `(("perl" ,perl)
        ("pkg-config" ,pkg-config)))
@@ -1456,7 +1469,7 @@ and mobile applications targeting TV-like form factors.")))
 (define-public qtscxml
   (package (inherit qtsvg)
     (name "qtscxml")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1465,7 +1478,7 @@ and mobile applications targeting TV-like form factors.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0f1k4fnk2aydagxqvkb636pcsi17sbq2zj2fn0ad50dvq013yiph"))
+               "197p5x1dadgjb39pd2vw60r63lvz68i0pm5i8xbyzgzm94hwn9fn"))
              (modules '((guix build utils)))
              (snippet
               '(begin
@@ -1487,7 +1500,7 @@ also contains functionality to support data models and executable content.")))
 (define-public qtpurchasing
   (package (inherit qtsvg)
     (name "qtpurchasing")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1496,7 +1509,7 @@ also contains functionality to support data models and executable content.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0crm39fy9aqns10mjlbxvkkna9xklic49zfp3f7v7cwl66wap6dc"))))
+               "1xld1yx085mhnqdipy29g2yy5af67hfm0wy4mvj7pl6y5qj8jw9d"))))
     (inputs
      `(("qtbase" ,qtbase)
        ("qtdeclarative" ,qtdeclarative)))
@@ -1507,7 +1520,7 @@ purchasing goods and services.")))
 (define-public qtcanvas3d
   (package (inherit qtsvg)
     (name "qtcanvas3d")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1516,7 +1529,7 @@ purchasing goods and services.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1pif3m1f44jrly2nh0hzid6dmdxqiy5qgx645hz6g5fmpl113d8g"))
+               "0h7arss7wr0jwl87kiwgbf0nlcgpbriyf7cnv9j4h7g8d09a777x"))
              (modules '((guix build utils)))
              (snippet
               '(begin
@@ -1546,7 +1559,7 @@ drawing calls from Qt Quick JavaScript.")))
 (define-public qtcharts
   (package (inherit qtsvg)
     (name "qtcharts")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1555,7 +1568,7 @@ drawing calls from Qt Quick JavaScript.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0avscsni84zrzydilkkp456sbaypyzhkn42qygjdq7wcn045zxk2"))))
+               "0551qfqnsfiy8kb1ng2v0yn7s6ggy7ghcmis983sbzxzjv2i58zn"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
@@ -1573,7 +1586,7 @@ selecting one of the charts themes.")
 (define-public qtdatavis3d
   (package (inherit qtsvg)
     (name "qtdatavis3d")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1582,7 +1595,7 @@ selecting one of the charts themes.")
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0gay0dsz05xfrlx190y95hp9wipzb988h02fqbqvyn00ds3s178w"))))
+               "05pzvrhvxhxjlav4axrhwlnxjzlr7mi8k3f06g59ryrwmb99kd37"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
@@ -1600,7 +1613,7 @@ customized by using themes or by adding custom items and labels to them.")
 (define-public qtnetworkauth
   (package (inherit qtsvg)
     (name "qtnetworkauth")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1609,7 +1622,7 @@ customized by using themes or by adding custom items and labels to them.")
                                  version ".tar.xz"))
              (sha256
               (base32
-               "05p4pvfp3k5612d54anvpj39bgc7v572x6kgk3fy69xgn7lhbd02"))))
+               "1zmpvkhf2kmnr8vsa6jq675d5cpnmsg3f8yds6g91yq1g3prqdvr"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:phases phases)
@@ -1629,7 +1642,7 @@ implementation of OAuth and OAuth2 authenticathon methods for Qt.")))
 (define-public qtremoteobjects
   (package (inherit qtsvg)
     (name "qtremoteobjects")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1638,7 +1651,7 @@ implementation of OAuth and OAuth2 authenticathon methods for Qt.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1yv9f2329nv4viiyqmq7ciz51574wd11grj8s88qm0ndcb36jbgb"))))
+               "06awsaf15rch1y9p2q9kdlmlaa8g28whbzf04b10zfflyijnvg7j"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:phases phases)
@@ -1662,7 +1675,7 @@ processes or computers.")))
 (define-public qtspeech
   (package (inherit qtsvg)
     (name "qtspeech")
-    (version "5.11.1")
+    (version "5.11.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://download.qt.io/official_releases/qt/"
@@ -1671,7 +1684,7 @@ processes or computers.")))
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1nwvbaijg35i98yaiqgnyn5vv0cn4v3wrxhwi1s0hfv9sv3q5iyw"))))
+               "110xr2y174sayi9f6swzp1wx7mx4sw9rifcdx2bkbsnbfab6zg8a"))))
     (arguments
      (substitute-keyword-arguments (package-arguments qtsvg)
        ((#:tests? _ #f) #f))) ; TODO: Enable the tests
@@ -2186,7 +2199,7 @@ time Web content can be enhanced with native controls.")
     (inputs
      `(("qtbase" ,qtbase)
        ("qtdeclarative" ,qtdeclarative)))
-    (home-page "https://github.com/frankosterfeld/qtkeychain")
+    (home-page "https://filcuc.github.io/DOtherSide/index.html")
     (synopsis "C language library for creating bindings for the Qt QML language")
     (description
      "DOtherSide is a C language library for creating bindings for the

gnu/packages/ruby.scm

@@ -7,7 +7,7 @@
 ;;; Copyright © 2015, 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2017 Nils Gillmann <ng0@n0.is>
 ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
-;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org>
 ;;;
@@ -110,7 +110,7 @@ a focus on simplicity and productivity.")
 (define-public ruby-2.3
   (package
     (inherit ruby)
-    (version "2.3.7")
+    (version "2.3.8")
     (source
      (origin
        (method url-fetch)
@@ -119,7 +119,7 @@ a focus on simplicity and productivity.")
                            "/ruby-" version ".tar.xz"))
        (sha256
         (base32
-         "1nwfaifq5624p1ml56qq5dy5w38z37x22r0qgrbgbzrzklmqy7y6"))
+         "1zhxbjff08pvbnxvn58krns6q0p6g4977q6ykfn823gxhifn63wi"))
        (modules '((guix build utils)))
        (snippet `(begin
                    ;; Remove bundled libffi
@@ -3481,7 +3481,7 @@ differences (added or removed nodes) between two XML/HTML documents.")
 (define-public ruby-rack
   (package
     (name "ruby-rack")
-    (version "2.0.5")
+    (version "2.0.6")
     (source
      (origin
        (method url-fetch)
@@ -3493,7 +3493,7 @@ differences (added or removed nodes) between two XML/HTML documents.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "1k1k4wk10l6bxx46pw58j2p3nmyzjqnr65hbjjqydd6517fmxgib"))
+         "0pb3g5ymvbf07xaxcn51dpqv3djlxavckp3qkxsjdxiqznb0d9p1"))
        ;; Ignore test which fails inside the build environment but works
        ;; outside.
        (patches (search-patches "ruby-rack-ignore-failing-test.patch"))))

gnu/packages/rust.scm

@@ -69,88 +69,6 @@
     ("mips64el-linux" "mips64el-unknown-linux-gnuabi64")
     (_                (nix-system->gnu-triplet system))))
 
-(define rust-bootstrap
-  (package
-    (name "rust-bootstrap")
-    (version "1.22.1")
-    (source #f)
-    (build-system gnu-build-system)
-    (native-inputs
-     `(("patchelf" ,patchelf)))
-    (inputs
-     `(("gcc" ,(canonical-package gcc))
-       ("gcc:lib" ,(canonical-package gcc) "lib")
-       ("zlib" ,zlib)
-       ("source"
-        ,(origin
-           (method url-fetch)
-           (uri (string-append
-                 "https://static.rust-lang.org/dist/"
-                 "rust-" version "-" (nix-system->gnu-triplet-for-rust)
-                 ".tar.gz"))
-           (sha256
-            (base32
-             (match (nix-system->gnu-triplet-for-rust)
-               ("i686-unknown-linux-gnu"
-                "15zqbx86nm13d5vq2gm69b7av4vg479f74b5by64hs3bcwwm08pr")
-               ("x86_64-unknown-linux-gnu"
-                "1yll78x6b3abnvgjf2b66gvp6mmcb9y9jdiqcwhmgc0z0i0fix4c")
-               ("armv7-unknown-linux-gnueabihf"
-                "138a8l528kzp5wyk1mgjaxs304ac5ms8vlpq0ggjaznm6bn2j7a5")
-               ("aarch64-unknown-linux-gnu"
-                "0z6m9m1rx4d96nvybbfmpscq4dv616m615ijy16d5wh2vx0p4na8")
-               ("mips64el-unknown-linux-gnuabi64"
-                "07k4pcv7jvfa48cscdj8752lby7m7xdl88v3a6na1vs675lhgja2")
-               (_ ""))))))))
-    (outputs '("out" "cargo"))
-    (arguments
-     `(#:tests? #f
-       #:strip-binaries? #f
-       #:phases
-       (modify-phases %standard-phases
-         (delete 'configure)
-         (delete 'build)
-         (replace 'install
-           (lambda* (#:key inputs outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (cargo-out (assoc-ref outputs "cargo"))
-                    (gcc:lib (assoc-ref inputs "gcc:lib"))
-                    (libc (assoc-ref inputs "libc"))
-                    (zlib (assoc-ref inputs "zlib"))
-                    (ld-so (string-append libc ,(glibc-dynamic-linker)))
-                    (rpath (string-append out "/lib:" zlib "/lib:"
-                                          libc "/lib:" gcc:lib "/lib"))
-                    (cargo-rpath (string-append cargo-out "/lib:" libc "/lib:"
-                                                gcc:lib "/lib"))
-                    (rustc (string-append out "/bin/rustc"))
-                    (rustdoc (string-append out "/bin/rustdoc"))
-                    (cargo (string-append cargo-out "/bin/cargo"))
-                    (gcc (assoc-ref inputs "gcc")))
-               ;; Install rustc/rustdoc.
-               (invoke "bash" "install.sh"
-                        (string-append "--prefix=" out)
-                        (string-append "--components=rustc,"
-                                       "rust-std-"
-                                       ,(nix-system->gnu-triplet-for-rust)))
-               ;; Install cargo.
-               (invoke "bash" "install.sh"
-                        (string-append "--prefix=" cargo-out)
-                        (string-append "--components=cargo"))
-               (for-each (lambda (file)
-                           (invoke "patchelf" "--set-rpath" rpath file))
-                         (cons* rustc rustdoc (find-files out "\\.so$")))
-               (invoke "patchelf" "--set-rpath" cargo-rpath cargo)
-               (for-each (lambda (file)
-                           (invoke "patchelf" "--set-interpreter" ld-so file))
-                         (list rustc rustdoc cargo))
-               #t))))))
-    (home-page "https://www.rust-lang.org")
-    (synopsis "Prebuilt rust compiler and cargo package manager")
-    (description "This package provides a pre-built @command{rustc} compiler
-and a pre-built @command{cargo} package manager, which can
-in turn be used to build the final Rust.")
-    (license license:asl2.0)))
-
 
 (define* (rust-source version hash #:key (patches '()))
   (origin
@@ -480,7 +398,8 @@ test = { path = \"../libtest\" }
      `(("jemalloc" ,jemalloc-4.5.0)
        ("llvm" ,llvm-3.9.1)
        ("openssl" ,openssl)
-       ("libcurl" ,curl))) ; For "cargo"
+       ("libssh2" ,libssh2) ; For "cargo"
+       ("libcurl" ,curl)))  ; For "cargo"
 
     ;; rustc invokes gcc, so we need to set its search paths accordingly.
     ;; Note: duplicate its value here to cope with circular dependencies among
@@ -636,42 +555,42 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
                    #t))))))))))
 
 (define-public rust-1.21
-  (rust-bootstrapped-package rust-1.20 "1.21.0"
+  (let ((base-rust (rust-bootstrapped-package rust-1.20 "1.21.0"
-                             "1yj8lnxybjrybp00fqhxw8fpr641dh8wcn9mk44xjnsb4i1c21qp"))
+                    "1yj8lnxybjrybp00fqhxw8fpr641dh8wcn9mk44xjnsb4i1c21qp")))
+    (package
+      (inherit base-rust)
+      (arguments
+       (substitute-keyword-arguments (package-arguments base-rust)
+         ((#:phases phases)
+          `(modify-phases ,phases
+             (add-after 'configure 'remove-ar
+               (lambda* (#:key inputs #:allow-other-keys)
+                 ;; Remove because toml complains about "unknown field".
+                 (substitute* "config.toml"
+                  (("^ar =.*") "\n"))
+                 #t)))))))))
 
 (define-public rust-1.22
   (rust-bootstrapped-package rust-1.21 "1.22.1"
                              "1lrzzp0nh7s61wgfs2h6ilaqi6iq89f1pd1yaf65l87bssyl4ylb"))
 
 (define-public rust-1.23
-  (package
+  (let ((base-rust (rust-bootstrapped-package rust-1.22 "1.23.0"
-    (inherit rust-1.20)
+                    "14fb8vhjzsxlbi6yrn1r6fl5dlbdd1m92dn5zj5gmzfwf4w9ar3l")))
-    (name "rust")
+    (package
-    (version "1.23.0")
+      (inherit base-rust)
-    (source (rust-source version "14fb8vhjzsxlbi6yrn1r6fl5dlbdd1m92dn5zj5gmzfwf4w9ar3l"))
+      (arguments
-    (native-inputs
+       (substitute-keyword-arguments (package-arguments base-rust)
-     `(("bison" ,bison) ; For the tests
+         ((#:phases phases)
-       ("cmake" ,cmake)
+          `(modify-phases ,phases
-       ("flex" ,flex) ; For the tests
+             (delete 'configure-archiver)
-       ("gdb" ,gdb)   ; For the tests
+             (delete 'remove-ar)
-       ("git" ,git)
+             (add-after 'unpack 'dont-build-native
-       ("procps" ,procps) ; For the tests
+               (lambda _
-       ("python-2" ,python-2)
+                 ;; XXX: Revisit this when we use gcc 6.
-       ("rustc-bootstrap" ,rust-bootstrap)
+                 (substitute* "src/binaryen/CMakeLists.txt"
-       ("cargo-bootstrap" ,rust-bootstrap "cargo")
+                  (("ADD_COMPILE_FLAG\\(\\\"-march=native\\\"\\)") ""))
-       ("pkg-config" ,pkg-config) ; For "cargo"
+                 #t)))))))))
-       ("which" ,which)))
-    (arguments
-     (substitute-keyword-arguments (package-arguments rust-1.20)
-       ((#:phases phases)
-        `(modify-phases ,phases
-           (delete 'configure-archiver)
-           (add-after 'unpack 'dont-build-native
-             (lambda _
-               ;; XXX: Revisit this when we use gcc 6.
-               (substitute* "src/binaryen/CMakeLists.txt"
-                 (("ADD_COMPILE_FLAG\\(\\\"-march=native\\\"\\)") ""))
-               #t))))))))
 
 (define-public rust-1.24
   (let ((base-rust
@@ -692,6 +611,9 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
                    (("fn test_loading_cosine") "#[ignore]\nfn test_loading_cosine"))
                  #t)))))))))
 
+;;; Rust 1.25 release support work with llvm 6--but build with llvm 6 is
+;;; not determenistic due to <https://github.com/rust-lang/rust/issues/50556>.
+;;; Keep using llvm 3.9.1 until builds become determenistic
 (define-public rust-1.25
   (let ((base-rust
          (rust-bootstrapped-package rust-1.24 "1.25.0"
@@ -699,10 +621,6 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
           #:patches '("rust-1.25-accept-more-detailed-gdb-lines.patch"))))
     (package
       (inherit base-rust)
-      (inputs
-       ;; Use LLVM 6.0
-       (alist-replace "llvm" (list llvm)
-                      (package-inputs base-rust)))
       (arguments
        (substitute-keyword-arguments (package-arguments base-rust)
          ((#:phases phases)
@@ -713,18 +631,6 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
                    ;; This test wants to update the crate index.
                    (("fn no_index_update") "#[ignore]\nfn no_index_update"))
                  #t))
-             (add-after 'configure 'enable-codegen-tests
-               (lambda _
-                 (substitute* "config.toml"
-                   (("codegen-tests = false") ""))
-                 #t))
-             ;; FIXME: Re-enable this test if it's indeed supposed to work.
-             ;; See <https://github.com/rust-lang/rust/issues/54178>.
-             (add-after 'enable-codegen-tests 'disable-nil-enum-test
-               (lambda _
-                 (substitute* "src/test/debuginfo/nil-enum.rs"
-                   (("ignore-lldb") "ignore-gdb"))
-                 #t))
              (replace 'patch-aarch64-test
                (lambda _
                  (substitute* "src/librustc_metadata/dynamic_lib.rs"
@@ -788,14 +694,15 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
                    (("fn no_index_update") "#[ignore]\nfn no_index_update"))
                  #t)))))))))
 
-(define-public rust
+(define-public rust-1.27
   (let ((base-rust
          (rust-bootstrapped-package rust-1.26 "1.27.2"
                                     "0pg1s37bhx9zqbynxyydq5j6q7kij9vxkcv8maz0m25prm88r0cs"
                                     #:patches
                                     '("rust-coresimd-doctest.patch"
                                       "rust-bootstrap-stage0-test.patch"
-                                      "rust-1.25-accept-more-detailed-gdb-lines.patch"))))
+                                      "rust-1.25-accept-more-detailed-gdb-lines.patch"
+                                      "rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch"))))
     (package
       (inherit base-rust)
       (arguments
@@ -808,4 +715,44 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
                  ;; `prefix' directory should exist before `install' call
                  (mkdir-p (assoc-ref outputs "out"))
                  (mkdir-p (assoc-ref outputs "cargo"))
+                 #t))
+             (add-after 'patch-cargo-tests 'disable-thinlto-test
+               (lambda* _
+                 ;; thinlto required llvm 6.0 for work
+                 (substitute* "src/tools/cargo/tests/testsuite/path.rs"
+                   (("fn thin_lto_works") "#[ignore]\nfn thin_lto_works"))
                  #t)))))))))
+
+(define-public rust
+  (let ((base-rust
+         (rust-bootstrapped-package rust-1.27 "1.28.0"
+                                    "11k4rn77bca2rikykkk9fmprrgjswd4x4kaq7fia08vgkir82nhx"
+                                    #:patches
+                                    '("rust-coresimd-doctest.patch"
+                                      "rust-bootstrap-stage0-test.patch"
+                                      "rust-1.25-accept-more-detailed-gdb-lines.patch"
+                                      "rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch"))))
+    (package
+      (inherit base-rust)
+      (inputs
+       ;; Use LLVM 6.0
+       (alist-replace "llvm" (list llvm)
+                      (package-inputs base-rust)))
+      (arguments
+       (substitute-keyword-arguments (package-arguments base-rust)
+         ((#:phases phases)
+          `(modify-phases ,phases
+             (add-after 'configure 'enable-codegen-tests
+               ;; Codegen tests should pass with llvm 6, so enable them.
+               (lambda* _
+                 (substitute* "config.toml"
+                   (("codegen-tests = false") ""))
+                 #t))
+             (add-after 'patch-tests 'disable-amd64-avx-test
+               ;; That test would fail on x86_64 machines without avx.
+               (lambda* _
+                 (substitute* "src/test/run-pass/issue-44056.rs"
+                   (("only-x86_64") "ignore-test"))
+                 #t))
+             ;; The thinlto test should pass with llvm 6.
+             (delete 'disable-thinlto-test))))))))

gnu/packages/sdl.scm

@@ -4,7 +4,7 @@
 ;;; Copyright © 2015, 2017 Sou Bunnbu <iyzsong@member.fsf.org>
 ;;; Copyright © 2015 Alex Kost <alezost@gmail.com>
 ;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
+;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
 ;;;
@@ -102,7 +102,7 @@ joystick, and graphics hardware.")
 (define-public sdl2
   (package (inherit sdl)
     (name "sdl2")
-    (version "2.0.8")
+    (version "2.0.9")
     (source (origin
              (method url-fetch)
              (uri
@@ -110,7 +110,7 @@ joystick, and graphics hardware.")
                              version ".tar.gz"))
              (sha256
               (base32
-               "1v4js1gkr75hzbxzhwzzif0sf9g07234sd23x1vdaqc661bprizd"))))
+               "1c94ndagzkdfqaa838yqg589p1nnqln8mv0hpwfhrkbfczf8cl95"))))
     (arguments
      (substitute-keyword-arguments (package-arguments sdl)
        ((#:configure-flags flags)
@@ -486,7 +486,7 @@ sound and device input (keyboards, joysticks, mice, etc.).")
 (define-public guile-sdl2
   (package
     (name "guile-sdl2")
-    (version "0.3.0")
+    (version "0.3.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -494,7 +494,7 @@ sound and device input (keyboards, joysticks, mice, etc.).")
                     version ".tar.gz"))
               (sha256
                (base32
-                "0iq6fw213qw292fxhrsg40al7hqyqyh4qpgl0x9rh08y949h2w97"))))
+                "0bw7x2lx90k4banc5k7yfkn3as93y25gr1xdr225ll7lmij21k64"))))
     (build-system gnu-build-system)
     (arguments
      '(#:make-flags '("GUILE_AUTO_COMPILE=0")

gnu/packages/search.scm

@@ -46,15 +46,14 @@
 (define-public xapian
   (package
     (name "xapian")
-    (version "1.4.7")
+    (version "1.4.9")
     ;; Note: When updating Xapian, remember to update xapian-bindings below.
     (source (origin
               (method url-fetch)
               (uri (string-append "https://oligarchy.co.uk/xapian/" version
                                   "/xapian-core-" version ".tar.xz"))
-              (patches (search-patches "xapian-revert-5489fb2f8.patch"))
               (sha256
-               (base32 "1lxmlds3v5s1gng9nk1rvmln1zcksrw5ds509y0glylwch5qmw0k"))))
+               (base32 "1k7m7m9jld96k16ansfw2w3c354pvd8ibhnrb6dw012g06fw7sfd"))))
     (build-system gnu-build-system)
     (inputs `(("zlib" ,zlib)
               ("util-linux" ,util-linux)))
@@ -92,7 +91,7 @@ rich set of boolean query operators.")
                                   "/xapian-bindings-" version ".tar.xz"))
               (sha256
                (base32
-                "0sjf9ck3a6p7xnd84w09l6s0xn2g03k9a9417f4mjnywfq9pa6a5"))))
+                "0ll3z3418r7bzxs4kyini2cbci5xl8i5scl3wyx88s2v4ak56bcz"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--with-python3")

gnu/packages/security-token.scm

@@ -160,7 +160,7 @@ the low-level development kit for the Yubico YubiKey authentication device.")
 (define-public pcsc-lite
   (package
     (name "pcsc-lite")
-    (version "1.8.23")
+    (version "1.8.24")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -168,7 +168,7 @@ the low-level development kit for the Yubico YubiKey authentication device.")
                     name "-" version ".tar.bz2"))
               (sha256
                (base32
-                "1jc9ws5ra6v3plwraqixin0w0wfxj64drahrbkyrrwzghqjjc9ss"))))
+                "0s3mv6csbi9303vvis0hilm71xsmi6cqkbh2kiipdisydbx6865q"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--enable-usbdropdir=/var/lib/pcsc/drivers"

gnu/packages/serialization.scm

@@ -225,6 +225,26 @@ that implements both the msgpack and msgpack-rpc specifications.")
     (home-page "https://github.com/libmpack/libmpack-lua")
     (synopsis "Lua bindings for the libmpack binary serialization library")))
 
+(define-public lua5.1-libmpack
+  (package (inherit lua-libmpack)
+    (name "lua5.1-libmpack")
+    (arguments
+     (substitute-keyword-arguments (package-arguments lua-libmpack)
+       ((#:make-flags flags)
+        `(let* ((lua-version ,(package-version lua-5.1))
+                (lua-major+minor ,(version-major+minor (package-version lua-5.1))))
+           (list "CC=gcc"
+                 "USE_SYSTEM_LUA=yes"
+                 (string-append "MPACK_LUA_VERSION=" lua-version)
+                 (string-append "MPACK_LUA_VERSION_NOPATCH=" lua-major+minor)
+                 (string-append "PREFIX="
+                                (assoc-ref %outputs "out"))
+                 (string-append "LUA_CMOD_INSTALLDIR="
+                                (assoc-ref %outputs "out")
+                                "/lib/lua/" lua-major+minor))))))
+    (inputs
+     `(("lua" ,lua-5.1)))))
+
 (define-public lua5.2-libmpack
   (package (inherit lua-libmpack)
     (name "lua5.2-libmpack")
@@ -418,7 +438,7 @@ to generate and parse.  The two primary functions are @code{cbor.loads} and
 (define-public flatbuffers
   (package
     (name "flatbuffers")
-    (version "1.9.0")
+    (version "1.10.0")
     (source
       (origin
         (method url-fetch)
@@ -426,7 +446,7 @@ to generate and parse.  The two primary functions are @code{cbor.loads} and
                             version ".tar.gz"))
         (sha256
          (base32
-          "1qs7sa9q4q6hs12yp875lvrv6393178qcmqs1ziwmjk088g4k9aw"))))
+          "0z4swldxs0s31hnkqdhsbfmc8vx3p7zsvmqaw4l31r2iikdy651p"))))
     (build-system cmake-build-system)
     (arguments
      '(#:build-type "Release"
@@ -435,7 +455,7 @@ to generate and parse.  The two primary functions are @code{cbor.loads} and
                             (assoc-ref %outputs "out") "/lib"))))
     (home-page "https://google.github.io/flatbuffers/")
     (synopsis "Memory-efficient serialization library")
-    (description "FlatBuffers is a cross platform serialization library for C++,
+    (description "FlatBuffers is a cross-platform serialization library for C++,
 C#, C, Go, Java, JavaScript, PHP, and Python.  It was originally created for
 game development and other performance-critical applications.")
     (license license:asl2.0)))

gnu/packages/shells.scm

@@ -569,30 +569,30 @@ The OpenBSD Korn Shell is a cleaned up and enhanced ksh.")
 (define-public loksh
   (package
     (name "loksh")
-    (version "6.3")
+    (version "6.4")
     (source
      (origin
-       (method url-fetch)
+       (method git-fetch)
-       (uri (string-append "https://github.com/dimkr/loksh/archive/"
+       (uri (git-reference
-                           version ".tar.gz"))
+             (url "https://github.com/dimkr/loksh.git")
-       (file-name (string-append name "-" version ".tar.gz"))
+             (commit version)))
+       (file-name (git-file-name name version))
        (sha256
-        (base32
+        (base32 "1d92cf5iadj1vwg0wwksaq1691zaxjrd2y4qygj4sdd25zsahj6p"))))
-         "0i1b60g1p19s5cnzz0nmjzjnxywm9szzyp1rcwfcx3gmzvrwr2sc"))))
     (build-system gnu-build-system)
     (inputs
-     `(("libbsd" ,libbsd)))
+     `(("libbsd" ,libbsd)
+       ("ncurses" ,ncurses)))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (arguments
-     `(#:tests? #f ;No tests included
+     `(#:tests? #f                      ; no tests included
        #:make-flags (list "CC=gcc" "HAVE_LIBBSD=1"
-                          (string-append "DESTDIR="
+                          (string-append "PREFIX="
-                                         (assoc-ref %outputs "out"))
+                                         (assoc-ref %outputs "out")))
-                          "PREFIX=")
        #:phases
        (modify-phases %standard-phases
-         (delete 'configure)))) ;No configure script
+         (delete 'configure))))         ; no configure script
     (home-page "https://github.com/dimkr/loksh")
     (synopsis "Korn Shell from OpenBSD")
     (description

gnu/packages/shellutils.scm

@@ -28,6 +28,7 @@
   #:use-module (guix licenses)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages readline)
@@ -133,16 +134,17 @@ environment variables of the current shell.")
 (define-public fzy
   (package
     (name "fzy")
-    (version "0.9")
+    (version "1.0")
     (source
      (origin
-       (method url-fetch)
+       (method git-fetch)
-       (uri (string-append "https://github.com/jhawthorn/fzy/archive/"
+       (uri (git-reference
-                           version ".tar.gz"))
+             (url "https://github.com/jhawthorn/fzy.git")
-       (file-name (string-append name "-" version ".tar.gz"))
+             (commit version)))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "1xfgxqbkcpi2n4381kj3fq4026qs6by7xhl5gn0fgp3dh232c63j"))))
+         "1gkzdvj73f71388jvym47075l9zw61v6l8wdv2lnc0mns6dxig0k"))))
     (build-system gnu-build-system)
     (arguments
      '(#:make-flags (list "CC=gcc"

gnu/packages/ssh.scm

@@ -67,16 +67,22 @@
 (define-public libssh
   (package
     (name "libssh")
-    (version "0.7.6")
+    (version "0.7.7")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                    (url "https://git.libssh.org/projects/libssh.git")
+                     ;; git.libssh.org does not support the fast "smart" HTTP
-                    (commit (string-append "libssh-" version))))
+                     ;; Git protocol. The "dumb" HTTP Git protocol is extremely
+                     ;; slow, and does not support shallow clones, so we use the
+                     ;; plain Git protocol despite its flaws. This offers an
+                     ;; incredible speedup and reduces the size of the the
+                     ;; source by more than half.
+                     (url "git://git.libssh.org/projects/libssh.git")
+                     (commit (string-append "libssh-" version))))
               (patches (search-patches "libssh-hostname-parser-bug.patch"))
               (sha256
                (base32
-                "0slwqa36mhyb6brdv2jvb9fxp7rvsv3ziv67kaxx615jxn52l5pa"))
+                "07adxvhmnaq2l7sq7sn4sjlikbm1zdicq8lavq5yfila6jbx9z1y"))
               (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (outputs '("out" "debug"))

gnu/packages/statistics.scm

@@ -339,14 +339,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.")
 (define-public r-mass
   (package
     (name "r-mass")
-    (version "7.3-50")
+    (version "7.3-51")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "MASS" version))
        (sha256
         (base32
-         "16hasv9k4n773jsyzvh8s3gbga49hwdj8n5hxij6zqisy4i0kxq6"))))
+         "0yp5ssfm9mahrp30y1hkqgjg70mzs6w065ba8h7j5ky1z6msdsdy"))))
     (properties `((upstream-name . "MASS")))
     (build-system r-build-system)
     (home-page "http://www.stats.ox.ac.uk/pub/MASS4/")
@@ -532,14 +532,14 @@ nonlinear mixed-effects models.")
 (define-public r-mgcv
   (package
    (name "r-mgcv")
-   (version "1.8-24")
+   (version "1.8-25")
    (source
     (origin
      (method url-fetch)
      (uri (cran-uri "mgcv" version))
      (sha256
       (base32
-       "15b76m1f0hz8dbmj9shqvslihdx5b7c48vck9grj5xs1z2y45r9c"))))
+       "1y2rq6v45pr2wcxihhgmingcdvcsilim2cvskrlb7k2n00qg6v2q"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-matrix" ,r-matrix)
@@ -725,13 +725,13 @@ effects of different types of color-blindness.")
 (define-public r-digest
   (package
     (name "r-digest")
-    (version "0.6.16")
+    (version "0.6.18")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "digest" version))
        (sha256
-        (base32 "1lhs59pdjhpb63jyy98pi1shk9shw044k6vl0mvw0f40v08326ar"))))
+        (base32 "0k3iv0r8wy8w7zchmgrnrqv3bc149075j4817kf0q521vi4f6vbj"))))
     (build-system r-build-system)
     ;; Vignettes require r-knitr, which requires r-digest, so we have to
     ;; disable them and the tests.
@@ -1059,13 +1059,13 @@ legends.")
 (define-public r-ggplot2
   (package
     (name "r-ggplot2")
-    (version "3.0.0")
+    (version "3.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggplot2" version))
        (sha256
-        (base32 "0kb977hizsvk3b1k3zr717q78bpmbabhl8cj9a3w717nkq1zas67"))))
+        (base32 "1msy36r21nlmnpyaw2m9k0ykmnd19b9il01b65w457pfw75prrs9"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-digest" ,r-digest)
@@ -1249,16 +1249,14 @@ for template use among CRAN packages.")
 (define-public r-evaluate
   (package
     (name "r-evaluate")
-    (version "0.11")
+    (version "0.12")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "evaluate" version))
               (sha256
                (base32
-                "1k8vcd4vsgg0hf7kdz8rlqp1dx4ygvg35aj4n3ay50kdnpzhaj5h"))))
+                "11rpn40153kcvqqrfhg2ldqfs68frg6yzsl0k3rxnlnv4c0v008g"))))
     (build-system r-build-system)
-    (propagated-inputs
-     `(("r-stringr" ,r-stringr)))
     (home-page "https://github.com/hadley/evaluate")
     (synopsis "Parsing and evaluation tools for R")
     (description
@@ -1310,13 +1308,13 @@ supported via Andre Simon's highlight package.")
 (define-public r-mime
   (package
     (name "r-mime")
-    (version "0.5")
+    (version "0.6")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "mime" version))
               (sha256
                (base32
-                "0i91m3ivaja1k33jwcvz16pfjypkci27awm8glil7sxhmwaj3izw"))))
+                "00f4gw4sg1kn03s67gficxgb7a7fb6pwhlvrxrml05q1mc2vcxa7"))))
     (build-system r-build-system)
     (home-page "https://github.com/yihui/mime")
     (synopsis "R package to map filenames to MIME types")
@@ -1423,13 +1421,13 @@ from knitr Rmarkdown.")
 (define-public r-microbenchmark
   (package
     (name "r-microbenchmark")
-    (version "1.4-4")
+    (version "1.4-6")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "microbenchmark" version))
               (sha256
                (base32
-                "0fv2w2vsiz18imf4115nd9chhmf275w2mb49pn7pkxi6z3bamc9c"))))
+                "1sn1fxgzakm5iqbgc35g3k4yi0iqrkmwz33cvdrphrzh1lxnmi3s"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/microbenchmark/")
     (synopsis "Accurate timing functions for R")
@@ -1526,13 +1524,13 @@ R packages that praise their users.")
 (define-public r-testthat
   (package
     (name "r-testthat")
-    (version "2.0.0")
+    (version "2.0.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "testthat" version))
               (sha256
                (base32
-                "155l53kb69jga5d8c5nvdwqlvlgfmk4vzyyl4d0108j53jnlgh1v"))))
+                "1cafy5xsjx6m08s45456mjsal7mfxzwpbrds0p4z3gwam948gpzy"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-cli" ,r-cli)
@@ -1553,13 +1551,13 @@ flexible and easy to set up.")
 (define-public r-r6
   (package
     (name "r-r6")
-    (version "2.2.2")
+    (version "2.3.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "R6" version))
               (sha256
                (base32
-                "13xfdr19ca7ymisidsanm6w7hsk3qmy5l8c0mlz3nk48f7s5cxq8"))))
+                "1jgshp0x8a65rwyvk31slnfp7l153dk5826y2rxcd5lpclby3d85"))))
     (build-system r-build-system)
     (home-page "https://github.com/wch/R6/")
     (synopsis "Classes with reference semantics in R")
@@ -1575,13 +1573,13 @@ defined in different packages.")
 (define-public r-rlang
   (package
     (name "r-rlang")
-    (version "0.2.2")
+    (version "0.3.0.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "rlang" version))
               (sha256
                (base32
-                "0cqd894wzi53rs53prg0j7i75h0yzgi0127fzjqbdbhczwh984f9"))))
+                "0j7kp6h25wbkvpzr7dpc0zgdpjiwsjjlgprj3mv7bgfalfq1si99"))))
     (build-system r-build-system)
     (home-page "http://rlang.tidyverse.org")
     (synopsis "Functions for base types, core R and Tidyverse features")
@@ -1617,13 +1615,13 @@ and printing capabilities than traditional data frames.")
 (define-public r-dplyr
   (package
     (name "r-dplyr")
-    (version "0.7.6")
+    (version "0.7.7")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "dplyr" version))
               (sha256
                (base32
-                "0c43h13s5mr0fklikbbm89gs6z5n66rkjzdv6w3w6kl5af5wr2fl"))))
+                "196lwck3i3m25jnn1f1nrda9svnjqqi89s0is79gbrphamddnlq5"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-assertthat" ,r-assertthat)
@@ -1767,13 +1765,13 @@ times.")
 (define-public r-data-table
   (package
     (name "r-data-table")
-    (version "1.11.4")
+    (version "1.11.8")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "data.table" version))
               (sha256
                (base32
-                "1mc1drqj5i5ar2za3nkh5j70y37s7z7xwqri2r2b72zkqggg3k7x"))))
+                "1nb6wngrk1a30m984524gf26fa1nwgyf4y4an94dibcwb5jp8hnw"))))
     (build-system r-build-system)
     (home-page "https://github.com/Rdatatable/data.table/wiki")
     (synopsis "Enhanced version of data.frame R object")
@@ -1913,13 +1911,13 @@ inference for statistical models.")
 (define-public r-coda
   (package
     (name "r-coda")
-    (version "0.19-1")
+    (version "0.19-2")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "coda" version))
               (sha256
                (base32
-                "14a4a8df4ygj05h37chmdn8kzcqs07fpbflxfrq530563mrza7yl"))))
+                "03fs3sdrrym3is92dgpa6ydk3m63gaihwy7bva4k0wm2hxm7x2k7"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-lattice" ,r-lattice)))
@@ -2212,14 +2210,14 @@ other packages.")
 (define-public r-commonmark
   (package
     (name "r-commonmark")
-    (version "1.5")
+    (version "1.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "commonmark" version))
        (sha256
         (base32
-         "1jwx5rgm0ypd9a3v4jd9za4a644rdzhk1n4dvmgkj9hdpwsida3z"))))
+         "1xymqncf8byqxzpx64zlp6vbx7gry572jkr2ax0zlavr8bli861x"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/commonmark")
     (synopsis "CommonMark and Github Markdown Rendering in R")
@@ -2350,13 +2348,13 @@ pure C implementation of the Git core methods.")
 (define-public r-rstudioapi
   (package
     (name "r-rstudioapi")
-    (version "0.7")
+    (version "0.8")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "rstudioapi" version))
               (sha256
                (base32
-                "133s75q2hr6jg28m1wvs96qrbc9c4vw87migwhkjqb88xxvbqhd5"))))
+                "0d6r0in13k0rcyr6asanwy0a9dv4lizq6l2w913rr222pq6vrrck"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/rstudioapi")
     (synopsis "Safely access the RStudio API")
@@ -2368,22 +2366,29 @@ informative error messages when it's not available.")
 (define-public r-devtools
   (package
     (name "r-devtools")
-    (version "1.13.6")
+    (version "2.0.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "devtools" version))
               (sha256
                (base32
-                "1d9n49djydywfyp9w3njgxs5lag4ac7719wmxy1lkgcmn3l9sx5r"))))
+                "1nyspqicn9zd1rgq3k07b3179i8w5ys6jbd65g9q8qczrb7z3x8f"))))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-digest" ,r-digest)
+     `(("r-callr" ,r-callr)
+       ("r-cli" ,r-cli)
+       ("r-digest" ,r-digest)
        ("r-git2r" ,r-git2r)
        ("r-httr" ,r-httr)
        ("r-jsonlite" ,r-jsonlite)
        ("r-memoise" ,r-memoise)
+       ("r-pkgbuild" ,r-pkgbuild)
+       ("r-pkgload" ,r-pkgload)
+       ("r-rcmdcheck" ,r-rcmdcheck)
+       ("r-remotes" ,r-remotes)
        ("r-rstudioapi" ,r-rstudioapi)
-       ("r-whisker" ,r-whisker)
+       ("r-sessioninfo" ,r-sessioninfo)
+       ("r-usethis" ,r-usethis)
        ("r-withr" ,r-withr)))
     (home-page "https://github.com/hadley/devtools")
     (synopsis "Tools to make developing R packages easier")
@@ -2459,13 +2464,13 @@ disk (or a connection).")
 (define-public r-plotrix
   (package
     (name "r-plotrix")
-    (version "3.7-3")
+    (version "3.7-4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "plotrix" version))
               (sha256
                (base32
-                "18702y1gbyis56mh219z5ww0nrkh6qx7bgqv3khyn80g2giwk7cf"))))
+                "1hs0zwaqs34559girinvysjfbvznyn8znp9cwvkqx6k2cqvcjinj"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/plotrix")
     (synopsis "Various plotting functions")
@@ -2942,13 +2947,13 @@ multiple breakpoints are allowed.")
 (define-public r-snow
   (package
     (name "r-snow")
-    (version "0.4-2")
+    (version "0.4-3")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "snow" version))
               (sha256
                (base32
-                "1mxbrkpnmq32x4wd0194d541661yvfrrjlr3lsf7qq53ms3h21zf"))))
+                "1n3n8pva9s34fvlw32yng0x416lmbv7q1fsd0ywa4kikmxym64l5"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/snow")
     (synopsis "Support for simple parallel computing in R")
@@ -3034,14 +3039,14 @@ parallel.")
 (define-public r-doparallel
   (package
     (name "r-doparallel")
-    (version "1.0.11")
+    (version "1.0.14")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "doParallel" version))
        (sha256
         (base32
-         "0sppgxk3d8mfsrb3cjdyn0mv0s4i7pcy8g8c3cjzbr6k8vmx5jsc"))))
+         "01qjs4iw9f1kgymcypj0m2s4pvgqhxaycpli0fb8lq3dc0vpzfyb"))))
     (properties `((upstream-name . "doParallel")))
     (build-system r-build-system)
     (propagated-inputs
@@ -3634,14 +3639,14 @@ the 'lite' version of the more complete @code{viridis} package.")
 (define-public r-tidyselect
   (package
     (name "r-tidyselect")
-    (version "0.2.4")
+    (version "0.2.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tidyselect" version))
        (sha256
         (base32
-         "1592dbzawhd1hpsp9919l4sifyiaaj6xr7lnhsbwa6jwmmb0xcsw"))))
+         "0x3cp36byhfjajikr1lwffjm85ayw3bcs7d7kb0cydgs61ifiqjw"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-glue" ,r-glue)
@@ -4231,13 +4236,13 @@ mechanism.")
 (define-public r-zoo
   (package
     (name "r-zoo")
-    (version "1.8-3")
+    (version "1.8-4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "zoo" version))
               (sha256
                (base32
-                "15jmkgwvq2mm9f09vijgx7sff8pszh90fndcwhk2vw9i0p183di0"))))
+                "1pywcp86kqijdrvl42qwdy75szrag9pzj0p88zbrj2r1klb8rn5i"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-lattice" ,r-lattice)))
@@ -4735,14 +4740,14 @@ can be efficiently implemented directly in the R language.")
 (define-public r-robustbase
   (package
     (name "r-robustbase")
-    (version "0.93-2")
+    (version "0.93-3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "robustbase" version))
        (sha256
         (base32
-         "1632p73iv9iqqm0v3k9rfv9way0him3fl35si1nly9wi5kpq5ci7"))))
+         "1nqh1qg1qd1qrxl1w585dqx7ql55qzjny1r4f9hqxpwd7lml07cc"))))
     (build-system r-build-system)
     (inputs
      `(("gfortran" ,gfortran)))
@@ -5084,17 +5089,19 @@ expected shortfall risk are also included.")
 (define-public r-nloptr
   (package
     (name "r-nloptr")
-    (version "1.0.4")
+    (version "1.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "nloptr" version))
        (sha256
         (base32
-         "1sz1xj3785x4vsm4nd6in298bk32hs2jk5nsxma7ivxi7jcmn8l4"))))
+         "15yz60kljxwnhm2m3gryjzxl3ynhkhd5jiwc179b1hz6rlzf71hz"))))
     (build-system r-build-system)
     (native-inputs
-     `(("pkg-config" ,pkg-config)))
+     `(("r-knitr" ,r-knitr) ; for building vignettes
+       ("pkg-config" ,pkg-config)
+       ("gfortran" ,gfortran)))
     (inputs
      `(("nlopt" ,nlopt)))
     (home-page "https://cran.r-project.org/web/packages/nloptr")
@@ -5165,14 +5172,14 @@ bootstrap test for generalized linear mixed models.")
 (define-public r-cardata
   (package
     (name "r-cardata")
-    (version "3.0-1")
+    (version "3.0-2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "carData" version))
        (sha256
         (base32
-         "193pdwgw6gk19v7swk1kwphg3vqdmpsgi555g9nyz93sa39j7r8j"))))
+         "152lfgaspgx6x2wzdb5p3zv6r87a0d2pg10h6fjmdr613kzlwp1v"))))
     (properties `((upstream-name . "carData")))
     (build-system r-build-system)
     (home-page "https://r-forge.r-project.org/projects/car/")

gnu/packages/syncthing.scm

@@ -298,100 +298,6 @@ structs in the Go programming language.")
       (home-page "https://github.com/gobwas/glob")
       (license expat))))
 
-(define* (go-github-com-gogo-protobuf-union
-           #:optional (packages (list go-github-com-gogo-protobuf
-                                      go-github-com-gogo-protobuf-protoc-gen-gogo)))
-  (package
-    (name "go-github-com-gogo-protobuf-union")
-    (version (package-version go-github-com-gogo-protobuf))
-    (source #f)
-    (build-system trivial-build-system)
-    (arguments
-     '(#:modules ((guix build union))
-       #:builder (begin
-                   (use-modules (ice-9 match)
-                                (guix build union))
-                   (match %build-inputs
-                     (((names . directories) ...)
-                      (union-build (assoc-ref %outputs "out")
-                                   directories)
-                      #t)))))
-    (inputs (map (lambda (package)
-                   (list (package-name package) package))
-                 packages))
-    (synopsis "Union of Go protobuf libraries")
-    (description "This is a union of Go protobuf libraries")
-    (home-page (package-home-page go-github-com-gogo-protobuf))
-    (license (package-license go-github-com-gogo-protobuf))))
-
-(define-public go-github-com-gogo-protobuf
-  (let ((commit "160de10b2537169b5ae3e7e221d28269ef40d311")
-        (revision "2"))
-    (package
-      (name "go-github-com-gogo-protobuf")
-      (version (git-version "0.5" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/gogo/protobuf")
-                      (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "0hxq28sgxym04rv0q40gpwkh4ni359q21hq3g78wwxwx4qfd4zwm"))))
-      (build-system go-build-system)
-      (arguments
-       `(#:import-path "github.com/gogo/protobuf/proto"
-         #:unpack-path "github.com/gogo/protobuf"))
-      (propagated-inputs
-       `(("go-github-com-gogo-protobuf-protoc-gen-gogo"
-          ,go-github-com-gogo-protobuf-protoc-gen-gogo)))
-      (synopsis "Protocol Buffers for Go with Gadgets")
-      (description "Gogoprotobuf is a fork of golang/protobuf with extra code
-generation features.  This code generation is used to achieve:
-@itemize
-@item fast marshalling and unmarshalling
-@item more canonical Go structures
-@item goprotobuf compatibility
-@item less typing by optionally generating extra helper code
-@item peace of mind by optionally generating test and benchmark code
-@item other serialization formats
-@end itemize")
-      (home-page "https://github.com/gogo/protobuf")
-      (license bsd-3))))
-
-(define-public go-github-com-gogo-protobuf-protoc-gen-gogo
-  (let ((commit "efccd33a0c20aa078705571d5ddbfa14c8395a63")
-        (revision "0"))
-    (package
-      (name "go-github-com-gogo-protobuf-protoc-gen-gogo")
-      (version (git-version "0.2" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/gogo/protobuf")
-                      (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "09kfa3aqmhh7p0rc6wd4fw5cjccidsk9vgcy13albv0g8vnbmmgw"))))
-      (build-system go-build-system)
-      (arguments
-       `(#:import-path "github.com/gogo/protobuf/protoc-gen-gogo"
-         #:unpack-path "github.com/gogo/protobuf"))
-      (synopsis "Protocol Buffers for Go with Gadgets")
-      (description "Gogoprotobuf is a fork of golang/protobuf with extra code
-generation features.  This code generation is used to achieve:
-@itemize
-@item fast marshalling and unmarshalling
-@item more canonical Go structures
-@item goprotobuf compatibility
-@item less typing by optionally generating extra helper code
-@item peace of mind by optionally generating test and benchmark code
-@item other serialization formats
-@end itemize")
-      (home-page "https://github.com/gogo/protobuf")
-      (license bsd-3))))
 
 (define-public go-github-com-golang-groupcache-lru
   (let ((commit "84a468cf14b4376def5d68c722b139b881c450a4")
@@ -822,44 +728,6 @@ generation.")
       (home-page "https://github.com/vitrun/qart")
       (license bsd-3))))
 
-;; Go searches for library modules by looking in the GOPATH environment
-;; variable.  This variable is a list of paths.  However, Go does not
-;; keep searching on GOPATH if it tries and fails to import a module.
-;; So, we use a union for packages sharing a namespace.
-(define* (go-golang-org-x-crypto-union #:optional
-                                    (packages (list go-golang-org-x-crypto-blowfish
-                                                    go-golang-org-x-crypto-bcrypt
-                                                    go-golang-org-x-crypto-tea
-                                                    go-golang-org-x-crypto-xtea
-                                                    go-golang-org-x-crypto-pbkdf2
-                                                    go-golang-org-x-crypto-twofish
-                                                    go-golang-org-x-crypto-cast5
-                                                    go-golang-org-x-crypto-salsa20)))
-  (package
-    (name "go-golang-org-x-crypto")
-    (version (package-version go-golang-org-x-crypto-bcrypt))
-    (source #f)
-    (build-system trivial-build-system)
-    (arguments
-     '(#:modules ((guix build union))
-       #:builder (begin
-                   (use-modules (ice-9 match)
-                                (guix build union))
-                   (match %build-inputs
-                     (((names . directories) ...)
-                      (union-build (assoc-ref %outputs "out")
-                                   directories)
-                      #t)))))
-    (inputs (map (lambda (package)
-                   (list (package-name package) package))
-                 packages))
-    (synopsis "Union of the Go x crypto libraries")
-    (description "A union of the Golang cryptographic libraries.  A
-union is required because `go build` assumes that all of the headers and
-libraries are in the same directory.")
-    (home-page (package-home-page go-golang-org-x-crypto-bcrypt))
-    (license (package-license go-golang-org-x-crypto-bcrypt))))
-
 (define* (go-golang-org-x-net-union #:optional
                                  (packages (list go-golang-org-x-net-ipv4
                                                  go-golang-org-x-net-bpf

gnu/packages/textutils.scm

@@ -338,7 +338,7 @@ as existing hashing techniques, with provably negligible risk of collisions.")
 (define-public oniguruma
   (package
     (name "oniguruma")
-    (version "6.8.2")
+    (version "6.9.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/kkos/"
@@ -346,7 +346,7 @@ as existing hashing techniques, with provably negligible risk of collisions.")
                                   "/onig-" version ".tar.gz"))
               (sha256
                (base32
-                "00s9gjgb3srn5sbmx4x9bssn52mi04d868ghizssdhjlddgxmsmd"))))
+                "1jg76i2ksf3s4bz4h3g2f9ac19q31lzxs11j900w7qqc0mgb5gwi"))))
     (build-system gnu-build-system)
     (home-page "https://github.com/kkos/oniguruma")
     (synopsis "Regular expression library")

gnu/packages/tor.scm

@@ -47,14 +47,14 @@
 (define-public tor
   (package
     (name "tor")
-    (version "0.3.4.8")
+    (version "0.3.4.9")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://dist.torproject.org/tor-"
                                  version ".tar.gz"))
              (sha256
               (base32
-               "08qhzcmzxp5xr2l5721vagksqnnbrzzzy5hmz5y9r8lrq2r4qsl2"))))
+               "0jhnvnp08hsfrzgsvg5xnfxyaw3nzgg9h24cwbwnz6iby20i05qs"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags (list "--enable-gcc-hardening"

gnu/packages/version-control.scm

@@ -166,7 +166,11 @@ as well as the classic centralized workflow.")
                 version ".tar.xz"))
           (sha256
            (base32
-            "1vn6pi9yvw7rnb9dvi1yjrvv39fqd1m9mwbaffqwizs3gaf91br7"))))))
+            "1vn6pi9yvw7rnb9dvi1yjrvv39fqd1m9mwbaffqwizs3gaf91br7"))))
+      ;; For subtree documentation.
+      ("asciidoc" ,asciidoc)
+      ("docbook-xsl" ,docbook-xsl)
+      ("xmlto" ,xmlto)))
    (inputs
     `(("curl" ,curl)
       ("expat" ,expat)
@@ -198,6 +202,7 @@ as well as the classic centralized workflow.")
               "send-email"                        ; for git-send-email
               "svn"                               ; git-svn
               "credential-netrc"                  ; git-credential-netrc
+              "subtree"                           ; git-subtree
               "gui"))                             ; gitk, git gui
    (arguments
     `(#:make-flags `("V=1"                        ;more verbose compilation
@@ -256,6 +261,26 @@ as well as the classic centralized workflow.")
             ;; Add the "PM.stamp" to avoid "no rule to make target".
             (call-with-output-file "perl/PM.stamp" (const #t))
             #t))
+        (add-after 'build 'build-subtree
+          (lambda* (#:key inputs #:allow-other-keys)
+            (with-directory-excursion "contrib/subtree"
+              (substitute* "Makefile"
+                ;; Apparently `xmlto' does not bother to looks up the stylesheets
+                ;; specified in the XML, unlike the above substitution.  Instead it
+                ;; uses a hard-coded URL.  Work around it here, but if this is
+                ;; common perhaps we should hardcode this path in xmlto itself.
+                (("\\$\\(XMLTO\\) -m \\$\\(MANPAGE_XSL\\) man")
+                 (string-append "$(XMLTO) -x "
+                                (string-append (assoc-ref inputs "docbook-xsl")
+                                               "/xml/xsl/docbook-xsl-"
+                                               ,(package-version docbook-xsl))
+                                "/manpages/docbook.xsl -m $(MANPAGE_XSL) man")))
+              (invoke "make")
+              (invoke "make" "install")
+              (invoke "make" "install-doc")
+              (substitute* "git-subtree"
+                (("/bin/sh") (which "sh"))))
+            #t))
         (add-before 'check 'patch-tests
           (lambda _
             (let ((store-directory (%store-directory)))
@@ -317,6 +342,14 @@ as well as the classic centralized workflow.")
                 `("PERL5LIB" ":" prefix
                   (,(string-append (assoc-ref outputs "out") "/share/perl5"))))
               #t)))
+        (add-after 'install 'install-subtree
+          (lambda* (#:key outputs #:allow-other-keys)
+            (let ((subtree (assoc-ref outputs "subtree")))
+              (install-file "contrib/subtree/git-subtree"
+                            (string-append subtree "/bin"))
+              (install-file "contrib/subtree/git-subtree.1"
+                            (string-append subtree "/share/man/man1"))
+              #t)))
         (add-after 'install 'split
           (lambda* (#:key inputs outputs #:allow-other-keys)
             ;; Split the binaries to the various outputs.
@@ -427,7 +460,7 @@ everything from small to very large projects with speed and efficiency.")
 (define-public libgit2
   (package
     (name "libgit2")
-    (version "0.26.7")
+    (version "0.26.8")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/libgit2/libgit2/"
@@ -435,7 +468,7 @@ everything from small to very large projects with speed and efficiency.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1vy4dnbvhcq3pw8n8zz6clnsv2xnkrichl8k96w3lb6yyk0lln35"))
+                "15kp4sq72kh762bm7dgspyrk0a6siarvll3k7nrhs0xy77idf80g"))
               (patches (search-patches "libgit2-mtime-0.patch"))
 
               ;; Remove bundled software.
@@ -1119,14 +1152,14 @@ control to Git repositories.")
 (define-public mercurial
   (package
     (name "mercurial")
-    (version "4.6.2")
+    (version "4.7.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://www.mercurial-scm.org/"
                                  "release/mercurial-" version ".tar.gz"))
              (sha256
               (base32
-               "1bv6wgcdx8glihjjfg22khhc52mclsn4kwfqvzbzlg0b42h4xl0w"))))
+               "1yq9r8s9jzj8hk2yizjk25s4w16yx9b8mbdj6wp8ld7j2r15kw4p"))))
     (build-system python-build-system)
     (arguments
      `(;; Restrict to Python 2, as Python 3 would require
@@ -1697,7 +1730,7 @@ modification time.")
 (define-public myrepos
   (package
     (name "myrepos")
-    (version "1.20171231")
+    (version "1.20180726")
     (source
      (origin
        (method git-fetch)
@@ -1706,15 +1739,34 @@ modification time.")
              (commit version)))
        (file-name (string-append name "-" version "-checkout"))
        (sha256
-        (base32 "10q7lpx152xnkk701fscn4dq99q9znnmv3bc2482khhjg7z8rps0"))
+        (base32 "0jphw61plm8cgklja6hs639xhdvxgvjwbr6jpvjwpp7hc5gmhms5"))))
-       (patches (search-patches "myrepos-CVE-2018-7032.patch"))))
     (build-system gnu-build-system)
-    (inputs
-     `(("perl" ,perl)))
     (arguments
      '(#:test-target "test"
-       #:phases (modify-phases %standard-phases (delete 'configure))
+       #:make-flags (list (string-append "PREFIX=" %output))
-       #:make-flags (list (string-append "PREFIX=" %output))))
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)
+         (add-after 'install 'wrap-webcheckout
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out")))
+               (wrap-program (string-append out "/bin/webcheckout")
+                 `("PERL5LIB" ":" prefix
+                   ,(map (lambda (i) (string-append (assoc-ref inputs i)
+                                                    "/lib/perl5/site_perl"))
+                         '("perl-encode-locale" "perl-http-date"
+                           "perl-http-message" "perl-html-parser" "perl-libwww"
+                           "perl-uri" "perl-try-tiny"))))
+               #t))))))
+    (inputs
+     `(("perl" ,perl)
+       ("perl-encode-locale" ,perl-encode-locale)
+       ("perl-html-parser" ,perl-html-parser)
+       ("perl-http-date" ,perl-http-date)
+       ("perl-http-message" ,perl-http-message)
+       ("perl-libwww" ,perl-libwww)
+       ("perl-try-tiny" ,perl-try-tiny)
+       ("perl-uri" ,perl-uri)))
     (home-page "https://myrepos.branchable.com/")
     (synopsis "Multiple repository management tool")
     (description

gnu/packages/video.scm

@@ -67,6 +67,7 @@
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages)
   #:use-module (gnu packages algebra)
+  #:use-module (gnu packages assembly)
   #:use-module (gnu packages audio)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages avahi)
@@ -96,6 +97,7 @@
   #:use-module (gnu packages glib)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages gnome)
+  #:use-module (gnu packages gnunet)
   #:use-module (gnu packages gnupg)
   #:use-module (gnu packages gstreamer)
   #:use-module (gnu packages gtk)
@@ -139,8 +141,7 @@
   #:use-module (gnu packages xdisorg)
   #:use-module (gnu packages xiph)
   #:use-module (gnu packages xml)
-  #:use-module (gnu packages xorg)
+  #:use-module (gnu packages xorg))
-  #:use-module (gnu packages assembly))
 
 (define-public aalib
   (package
@@ -613,14 +614,14 @@ standards (MPEG-2, MPEG-4 ASP/H.263, MPEG-4 AVC/H.264, and VC-1/VMW3).")
 (define-public ffmpeg
   (package
     (name "ffmpeg")
-    (version "4.0.2")
+    (version "4.0.3")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://ffmpeg.org/releases/ffmpeg-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "15rgzcmdccy4flajs63gkz4n3k24wkkg50r13l1r83lrxg4hqp59"))))
+               "1vg229mxcrm415cq6q1nfm891hm4x56mb5p4cqjnlqnky7ikfg15"))))
     (build-system gnu-build-system)
     (inputs
      `(("fontconfig" ,fontconfig)
@@ -789,14 +790,14 @@ audio/video codec library.")
 (define-public ffmpeg-3.4
   (package
     (inherit ffmpeg)
-    (version "3.4.4")
+    (version "3.4.5")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://ffmpeg.org/releases/ffmpeg-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1iizgnhjbhar9y1ykqlj1czqanlv24knkfq5vvfnppv5x00pcvrq"))))))
+               "0b59qk5wpc5ksiha76jbhb859g5gxa4w0k6afh3kgvgajiivs73l"))))))
 
 (define-public ffmpeg-2.8
   (package
@@ -2911,25 +2912,27 @@ It counts more than 100 plugins.")
 (define-public motion
   (package
     (name "motion")
-    (version "4.1.1")
+    (version "4.2")
     (home-page "https://motion-project.github.io/")
     (source (origin
-              (method url-fetch)
+              (method git-fetch)
-              (uri (string-append
+              (uri (git-reference
-                    "https://github.com/Motion-Project/motion/archive/"
+                    (url "https://github.com/Motion-Project/motion.git")
-                    "release-" version ".tar.gz"))
+                    (commit (string-append "release-" version))))
               (sha256
                (base32
-                "1qm4i8zrqafl60sv2frhixvkd0wh0r5jfcrj5i6gha7yplsvjx10"))
+                "0c0q6dl4v561m5y8bp0c0h4p3s52fjgcdnsrrf5ygdi288d3rfxv"))
-              (file-name (string-append name "-" version ".tar.gz"))))
+              (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (native-inputs
      `(("autoconf" ,autoconf-wrapper)
        ("automake" ,automake)
+       ("gettext" ,gettext-minimal)
        ("pkg-config" ,pkg-config)))
     (inputs
      `(("libjpeg" ,libjpeg)
        ("ffmpeg" ,ffmpeg-3.4)
+       ("libmicrohttpd" ,libmicrohttpd)
        ("sqlite" ,sqlite)))
     (arguments
      '(#:phases (modify-phases %standard-phases

gnu/packages/vpn.scm

@@ -48,27 +48,17 @@
 (define-public gvpe
   (package
     (name "gvpe")
-    (version "3.0")
+    (version "3.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnu/gvpe/gvpe-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "1v61mj25iyd91z0ir7cmradkkcm1ffbk52c96v293ibsvjs2s2hf"))
+                "1cz8n75ksl0l908zc5l3rnfm1hv7130s2w8710799fr5sxrdbszi"))))
-              (modules '((guix build utils)))
-              (snippet
-               '(begin
-                  ;; Remove the outdated bundled copy of glibc's getopt, which
-                  ;; provides a 'getopt' declaration that conflicts with that
-                  ;; of glibc 2.26.
-                  (substitute* "lib/Makefile.in"
-                    (("getopt1?\\.(c|h|\\$\\(OBJEXT\\))") ""))
-                  (for-each delete-file
-                            '("lib/getopt.h" "lib/getopt.c"))
-                  #t))))
     (build-system gnu-build-system)
     (home-page "http://software.schmorp.de/pkg/gvpe.html")
+    (native-inputs `(("pkg-config" ,pkg-config)))
     (inputs `(("openssl" ,openssl)
               ("zlib" ,zlib)))
     (synopsis "Secure VPN among multiple nodes over an untrusted network")
@@ -312,14 +302,14 @@ traversing network address translators (@dfn{NAT}s) and firewalls.")
 (define-public tinc
   (package
     (name "tinc")
-    (version "1.0.33")
+    (version "1.0.35")
     (source (origin
               (method url-fetch)
-              (uri (string-append "http://tinc-vpn.org/packages/"
+              (uri (string-append "https://tinc-vpn.org/packages/"
                                   name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1x0hpfz13vn4pl6dcpnls6xq3rfcbdsg90awcfn53ijb8k35svvz"))))
+                "0pl92sdwrkiwgll78x0ww06hfljd07mkwm62g8x17qn3gha3pj0q"))))
     (build-system gnu-build-system)
     (arguments
      '(#:configure-flags
@@ -328,7 +318,7 @@ traversing network address translators (@dfn{NAT}s) and firewalls.")
     (inputs `(("zlib" ,zlib)
               ("lzo" ,lzo)
               ("openssl" ,openssl)))
-    (home-page "http://tinc-vpn.org")
+    (home-page "https://tinc-vpn.org")
     (synopsis "Virtual Private Network (VPN) daemon")
     (description
      "Tinc is a VPN that uses tunnelling and encryption to create a secure

gnu/packages/web.scm

@@ -3697,7 +3697,7 @@ library.")
 (define-public perl-www-mechanize
   (package
     (name "perl-www-mechanize")
-    (version "1.88")
+    (version "1.89")
     (source
      (origin
        (method url-fetch)
@@ -3705,7 +3705,7 @@ library.")
                            "WWW-Mechanize-" version ".tar.gz"))
        (sha256
         (base32
-         "0yd8a1zsfpbv5wr79x3iqmik9gvcd10iam9dfrdan4dri9vpxn9n"))))
+         "1mxx362vqiniw8vi6k3j7v9b1s7012irhfcblcz1p6jz9cjqi7mh"))))
     (build-system perl-build-system)
     (native-inputs                      ;only for tests
      `(("perl-cgi" ,perl-cgi)
@@ -3874,13 +3874,13 @@ in systems and applications.")
 (define-public r-servr
   (package
     (name "r-servr")
-    (version "0.10")
+    (version "0.11")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "servr" version))
               (sha256
                (base32
-                "0yz3igqsiyqnjj1ngh199zicg3spx4kbmvl0wc8i8xahk6l9g06v"))))
+                "0yj3p1risf269n25dd56lqv82dsxv6a0aq4bcc1ddn9wv7h2xdfi"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-httpuv" ,r-httpuv)
@@ -3932,13 +3932,13 @@ directory.")
 (define-public r-htmlwidgets
   (package
     (name "r-htmlwidgets")
-    (version "1.2")
+    (version "1.3")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "htmlwidgets" version))
               (sha256
                (base32
-                "04c4d0mfcy3dkdlbxnaccpdgxvyxfdwfmmh5djim6v9hyg0j2z8s"))))
+                "04jsdh14l2zifbjpbbh23w7bxz1wpsas0zb2gy2zwv4yqamzzr7i"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-htmltools" ,r-htmltools)
@@ -5607,13 +5607,13 @@ responsive, and powerful applications with minimal effort.")
 (define-public r-shinydashboard
   (package
     (name "r-shinydashboard")
-    (version "0.7.0")
+    (version "0.7.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "shinydashboard" version))
               (sha256
                (base32
-                "10yqcqqcxgfqwkmscqwvvgr710im583qsqnsqkfpisjvkqp10yqb"))))
+                "0khac8b27q3swdw07kl609hm0fjfjsjv591b388q99mqqr2rk92i"))))
     (build-system r-build-system)
     ;; The directory inst/AdminLTE/ contains a minified JavaScript file.
     ;; Regenerate it from the included sources.
@@ -5633,6 +5633,7 @@ responsive, and powerful applications with minimal effort.")
                      (dump-port minified port))))))))))
     (propagated-inputs
      `(("r-htmltools" ,r-htmltools)
+       ("r-promises" ,r-promises)
        ("r-shiny" ,r-shiny)))
     (native-inputs
      `(("uglify-js" ,uglify-js)))
@@ -5645,6 +5646,35 @@ application framework for R, making it easy to create attractive dashboards.")
     ;; later.
     (license l:gpl2+)))
 
+(define-public r-shinyfiles
+  (package
+    (name "r-shinyfiles")
+    (version "0.7.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "shinyFiles" version))
+       (sha256
+        (base32
+         "1cbg09l7w2zbgxb4qjm9p873p0lzrihlzsk5xxi3cpxdckn6zsrm"))))
+    (properties `((upstream-name . "shinyFiles")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-fs" ,r-fs)
+       ("r-htmltools" ,r-htmltools)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-shiny" ,r-shiny)
+       ("r-tibble" ,r-tibble)))
+    (home-page "https://github.com/thomasp85/shinyFiles")
+    (synopsis "Server-side file system viewer for Shiny")
+    (description
+     "This package provides functionality for client-side navigation of the
+server side file system in shiny apps.  In case the app is running locally
+this gives the user direct access to the file system without the need to
+\"download\" files to a temporary location.  Both file and folder selection as
+well as file saving is available.")
+    (license l:gpl2+)))
+
 (define-public r-crosstalk
   (package
     (name "r-crosstalk")

gnu/packages/webkit.scm

@@ -143,14 +143,14 @@ HTML/CSS applications to full-fledged web browsers.")
 (define-public webkitgtk-2.22
   (package/inherit webkitgtk
     (name "webkitgtk")
-    (version "2.22.2")
+    (version "2.22.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://www.webkitgtk.org/releases/"
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1flrbr8pzbrlwv09b4pmgh6vklw7jghd2lgrhcb72vl9s7a8fm1l"))))
+                "0wnddhm2bihmmkmi919lyxskvjk2wrzx6azkiypyjfwm08lm9zcx"))))
     (native-inputs
      `(("gcc" ,gcc-7)  ; webkitgtk-2.22 requires gcc-6 or newer
        ,@(package-native-inputs webkitgtk)))

gnu/packages/wine.scm

@@ -225,7 +225,7 @@ integrate Windows applications into your desktop.")
 (define-public wine-staging-patchset-data
   (package
    (name "wine-staging-patchset-data")
-   (version "3.18")
+   (version "3.19")
    (source
     (origin
       (method git-fetch)
@@ -235,7 +235,7 @@ integrate Windows applications into your desktop.")
       (file-name (git-file-name name version))
       (sha256
        (base32
-        "18g1lmqzkc7ngppynimfvza1gkdhqlnjbvnckmaws847ns4i0kzp"))))
+        "0nmlhc6jamz0zb4b1w165l8j1a1b0j5ad1sv06aasc9jy8s12b22"))))
    (build-system trivial-build-system)
    (native-inputs
     `(("bash" ,bash)
@@ -281,7 +281,7 @@ integrate Windows applications into your desktop.")
               (file-name (string-append name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0xqs76hxcym8nb95r7l72xx0msbscp7fhkr1wrv4r0923d5x9s4v"))))
+                "0slwgbxclx2dx0glj8az3mv0bqxmx119v9s0jvg1b5zhmqkcc8gg"))))
     (inputs `(("autoconf" ,autoconf) ; for autoreconf
               ("gtk+" ,gtk+)
               ("libva" ,libva)

gnu/packages/wm.scm

@@ -180,14 +180,14 @@ commands would.")
 (define-public i3-wm
   (package
     (name "i3-wm")
-    (version "4.15")
+    (version "4.16")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://i3wm.org/downloads/i3-"
                                   version ".tar.bz2"))
               (sha256
                (base32
-                "09jk70hsdxab24lqvj2f30ijrkbv3f6q9xi5dcsax1dw3x6m4z91"))))
+                "1d2mnryn7m9c6d69awd7lwzadliapd0ahi5n8d0ppqy533ssaq6c"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags

gnu/packages/xdisorg.scm

@@ -1521,3 +1521,37 @@ the X11 clipboard")
 the numlock key in X11.  It can be called from the user's initialization files
 to automatically turn it on on login.")
     (license license:expat)))
+
+(define-public xrandr-invert-colors
+  (package
+    (name "xrandr-invert-colors")
+    (version "0.01")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/zoltanp/xrandr-invert-colors.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1br3x9vr6xm4ika06n8cfxx1b3wdchdqvyzjl4y1chmivrml8x9h"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags (list "CC=gcc")
+       #:tests? #f ; there are none
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out  (assoc-ref outputs "out"))
+                    (bin  (string-append out "/bin")))
+               (install-file "xrandr-invert-colors.bin" bin)
+               #t))))))
+    (inputs
+     `(("libxrandr" ,libxrandr)))
+    (home-page "https://github.com/zoltanp/xrandr-invert-colors")
+    (synopsis "Invert display colors")
+    (description "This package provides a small utility for inverting the
+colors on all monitors attached to an XRandR-capable X11 display server.")
+    (license license:gpl3+)))

gnu/packages/xiph.scm

@@ -8,6 +8,7 @@
 ;;; Copyright © 2015, 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017, 2018 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Leo Famulari <leo@famulari.name>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -60,7 +61,7 @@
    (version "1.3.3")
    (source (origin
             (method url-fetch)
-            (uri (string-append "http://downloads.xiph.org/releases/ogg/libogg-"
+            (uri (string-append "https://downloads.xiph.org/releases/ogg/libogg-"
                                 version ".tar.xz"))
             (sha256
              (base32
@@ -83,7 +84,7 @@ periodic timestamps for seeking.")
    (version "1.3.6")
    (source (origin
             (method url-fetch)
-            (uri (string-append "http://downloads.xiph.org/releases/vorbis/"
+            (uri (string-append "https://downloads.xiph.org/releases/vorbis/"
                                 "libvorbis-" version ".tar.xz"))
             (sha256
              (base32
@@ -109,7 +110,7 @@ polyphonic) audio and music at fixed and variable bitrates from 16 to
     (version "1.1.1")
     (source (origin
              (method url-fetch)
-             (uri (string-append "http://downloads.xiph.org/releases/theora/"
+             (uri (string-append "https://downloads.xiph.org/releases/theora/"
                                  "libtheora-" version ".tar.xz"))
              (sha256
               (base32
@@ -134,7 +135,7 @@ compressed video format.")
     (source
      (origin
       (method url-fetch)
-      (uri (string-append "http://downloads.xiph.org/releases/speex/speex-"
+      (uri (string-append "https://downloads.xiph.org/releases/speex/speex-"
                           version ".tar.gz"))
       (sha256
        (base32
@@ -162,7 +163,7 @@ stereo encoding, and voice activity detection.")
     (version "1.2rc3")
     (source (origin
               (method url-fetch)
-              (uri (string-append "http://downloads.xiph.org/releases/speex/"
+              (uri (string-append "https://downloads.xiph.org/releases/speex/"
                                   "speexdsp-" version ".tar.gz"))
               (sha256
                (base32
@@ -188,7 +189,7 @@ work from the @code{speex} codec.")
     (source
      (origin
       (method url-fetch)
-      (uri (string-append "http://downloads.xiph.org/releases/ao/libao-"
+      (uri (string-append "https://downloads.xiph.org/releases/ao/libao-"
                           version ".tar.gz"))
       (sha256
        (base32
@@ -237,7 +238,7 @@ It currently supports:
    (version "1.3.2")
    (source (origin
             (method url-fetch)
-            (uri (string-append "http://downloads.xiph.org/releases/flac/flac-"
+            (uri (string-append "https://downloads.xiph.org/releases/flac/flac-"
                                 version ".tar.xz"))
             (sha256
              (base32
@@ -261,7 +262,7 @@ meaning that audio is compressed in FLAC without any loss in quality.")
    (version "0.4.1")
    (source (origin
             (method url-fetch)
-            (uri (string-append "http://downloads.xiph.org/releases/kate/"
+            (uri (string-append "https://downloads.xiph.org/releases/kate/"
                                 "libkate-" version ".tar.gz"))
             (sha256
              (base32
@@ -297,7 +298,7 @@ Kate stream.")
    (version "1.4.0")
    (source (origin
             (method url-fetch)
-            (uri (string-append "http://downloads.xiph.org/releases/vorbis/"
+            (uri (string-append "https://downloads.xiph.org/releases/vorbis/"
                                 "vorbis-tools-" version ".tar.gz"))
             (sha256
              (base32
@@ -332,14 +333,14 @@ ogginfo, to obtain information (tags, bitrate, length, etc.) about
 (define opus
   (package
     (name "opus")
-    (version "1.2.1")
+    (version "1.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://archive.mozilla.org/pub/opus/opus-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0ch7yzgg4bn1g36bpjsfrgs4n19c84d7wpdida6yzifrrhwx7byg"))))
+                "0l651n19h0vhc0sn6w2c95hgqks1i8m4b3j04ncaznzjznp6jgag"))))
     (build-system gnu-build-system)
     (synopsis "Versatile audio codec")
     (description
@@ -354,15 +355,15 @@ incorporated technology from Skype's SILK codec and Xiph.Org's CELT codec.")
 (define opus-tools
   (package
     (name "opus-tools")
-    (version "0.1.10")
+    (version "0.2")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "http://downloads.xiph.org/releases/opus/opus-tools-"
+                    "https://downloads.xiph.org/releases/opus/opus-tools-"
                     version ".tar.gz"))
               (sha256
                (base32
-                "135jfb9ny3xvd27idsxj7j5ns90lslbyrq70cq3bfwcls4r7add2"))))
+                "11pzl27s4vcz4m18ch72nivbhww2zmzn56wspb7rll1y1nq6rrdl"))))
     (build-system gnu-build-system)
     (arguments
      ;; The package developers misuse pkg-config such that it doesn't work
@@ -373,9 +374,12 @@ incorporated technology from Skype's SILK codec and Xiph.Org's CELT codec.")
                                               "/include -I"
                                               (assoc-ref %build-inputs "opus")
                                               "/include/opus"))))
-    (inputs `(("libogg" ,libogg)
+    (native-inputs
-              ("opus" ,opus)
+     `(("pkg-config" ,pkg-config)))
-              ("flac" ,flac)))
+    (inputs
+     `(("libopusenc" ,libopusenc)
+       ("opusfile" ,opusfile)
+       ("flac" ,flac)))
     (synopsis
      "Command line utilities to encode, inspect, and decode .opus files")
     (description "Opus is a royalty-free, highly versatile audio codec.
@@ -391,19 +395,19 @@ decoding .opus files.")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "http://downloads.xiph.org/releases/opus/opusfile-" version
+                    "https://downloads.xiph.org/releases/opus/opusfile-" version
                     ".tar.gz"))
               (sha256
                (base32
                 "1gq3aszzl5glgbajw5p1f5a1kdyf23w5vjdmwwrk246syin9pkkl"))))
     (build-system gnu-build-system)
+    ;; Required by opusfile.pc and opusurl.pc.
     (propagated-inputs
-     `(("opus" ,opus)))
+     `(("libogg" ,libogg)
+       ("openssl" ,openssl)
+       ("opus" ,opus)))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
-    (inputs
-     `(("libogg" ,libogg)
-       ("openssl" ,openssl)))
     (synopsis "Versatile audio codec")
     (description
      "The opusfile library provides seeking, decode, and playback of Opus
@@ -412,18 +416,40 @@ windows systems.")
     (license license:bsd-3)
     (home-page "https://www.opus-codec.org")))
 
+(define-public libopusenc
+  (package
+    (name "libopusenc")
+    (version "0.2.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://archive.mozilla.org/pub/opus/"
+                                  "libopusenc-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1ffb0vhlymlsq70pxsjj0ksz77yfm2x0a1x8q50kxmnkm1hxp642"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (propagated-inputs
+     `(("opus" ,opus)))
+    (synopsis "Library for encoding Opus audio files and streams ")
+    (description "The libopusenc libraries provide a high-level API for
+encoding Opus files and streams.")
+    (home-page "https://www.opus-codec.org/")
+    (license license:bsd-3)))
+
 (define-public icecast
   (package
     (name "icecast")
-    (version "2.4.3")
+    (version "2.4.4")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "http://downloads.xiph.org/releases/icecast/icecast-"
+                    "https://downloads.xiph.org/releases/icecast/icecast-"
                     version ".tar.gz"))
               (sha256
                (base32
-                "14n5vm2xnyn8y7kl46lnnlgv6v5fjykhc57ffdsh0qaxfs6a8p68"))))
+                "0i2d9rhav0x6js2qhjf5iy6j2a7f0d11ail0lfv40hb1kygrgda9"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -451,7 +477,7 @@ things in between.")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "http://downloads.xiph.org/releases/libshout/"
+                    "https://downloads.xiph.org/releases/libshout/"
                     name "-" version ".tar.gz"))
               (sha256
                (base32
@@ -464,7 +490,7 @@ things in between.")
      `(("libtheora" ,libtheora)
        ("libvorbis" ,libvorbis)
        ("speex"     ,speex)))
-    (home-page "http://www.icecast.org/")
+    (home-page "https://icecast.org/")
     (synopsis "Audio streaming library for icecast encoders")
     (description
      "Libshout is a library for communicating with and sending data to an

gnu/packages/xml.scm

@@ -825,14 +825,14 @@ RSS 0.91, RSS 1.0, RSS 2.0, Atom")
 (define-public perl-xml-xpath
   (package
     (name "perl-xml-xpath")
-    (version "1.42")
+    (version "1.44")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://cpan/authors/id/M/MA/MANWAR/"
                                   "XML-XPath-" version ".tar.gz"))
               (sha256
                (base32
-                "04mm91kxav598ax7nlg81dhnvanwvg6bkf30l0cgkmga5iyccsly"))))
+                "03yxj7w5a43ibbpiqsvb3lswj2b71dydsx4rs2fw0p8n0l3i3j8w"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-path-tiny" ,perl-path-tiny)))
@@ -936,16 +936,16 @@ XSL-T processor.  It also performs any necessary post-processing.")
 (define-public xmlsec
   (package
     (name "xmlsec")
-    (version "1.2.26")
+    (version "1.2.27")
     (source (origin
-             (method url-fetch)
+              (method url-fetch)
-             (uri (string-append "https://www.aleksey.com/xmlsec/download/"
+              (uri (string-append "https://www.aleksey.com/xmlsec/download/"
-                                 name "1-" version ".tar.gz"))
+                                  "xmlsec1-" version ".tar.gz"))
-             (sha256
+              (sha256
-              (base32
+               (base32
-               "0l1dk344rn3j2vnj13daz72xd8j1msvzhg82n2il5ji0qz4pd0ld"))))
+                "1dlf263mvxj9n4lnhhjawc2hv45agrwjf8kxk7k8h9g9v2x5dmwp"))))
     (build-system gnu-build-system)
-    (propagated-inputs ; according to xmlsec1.pc
+    (propagated-inputs                  ; according to xmlsec1.pc
      `(("libxml2" ,libxml2)
        ("libxslt" ,libxslt)))
     (inputs
@@ -968,6 +968,10 @@ Libxml2).")
   (package
     (inherit xmlsec)
     (name "xmlsec-nss")
+    (native-inputs
+     ;; For tests.
+     `(("nss:bin" ,nss "bin")           ; for certutil
+       ,@(package-native-inputs xmlsec)))
     (inputs
      `(("nss" ,nss)
        ("libltdl" ,libltdl)))
@@ -976,7 +980,7 @@ Libxml2).")
 (define-public minixml
   (package
     (name "minixml")
-    (version "2.11")
+    (version "2.12")
     (source (origin
               (method url-fetch/tarbomb)
               (uri (string-append "https://github.com/michaelrsweet/mxml/"
@@ -984,10 +988,13 @@ Libxml2).")
                                   "/mxml-" version ".tar.gz"))
               (sha256
                (base32
-                "13xsw8vvkxd10vca42ccdyl9rs64lcvhbfz57aknpl3xcfn8mxma"))))
+                "1z8nqxa4pqdic8wpixkkgg1m2pak9wjikjjxnk3j5i0d29dbgmmg"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:phases
+     `(#:configure-flags
+       (list (string-append "LDFLAGS=-Wl,-rpath="
+                            (assoc-ref %outputs "out") "/lib"))
+       #:phases
        (modify-phases %standard-phases
          (add-after 'unpack 'fix-permissions
            ;; FIXME: url-fetch/tarbomb resets all permissions to 555/444.

gnu/packages/xorg.scm

@@ -2905,8 +2905,8 @@ X server.")
 
 
 (define-public xf86-video-intel
-  (let ((commit "d7dfab62a9853b44bbcd67dac08391d8e5114c97")
+  (let ((commit "0932a6b37ba6d5c9e916a1cb6ab89c3205b81a0c")
-        (revision "10"))
+        (revision "11"))
     (package
       (name "xf86-video-intel")
       (version (git-version "2.99.917" revision commit))
@@ -2919,7 +2919,7 @@ X server.")
                (commit commit)))
          (sha256
           (base32
-           "1vcfal4xr9q6016p28lnlyg709da6d305dysyyrj3fjp9fj48sva"))
+           "10pqxp7n53ddiypd3l1i9gkbgzdpi6rz9vksbd16biq7pbijc2xf"))
          (file-name (git-file-name name version))))
       (build-system gnu-build-system)
       (inputs `(("mesa" ,mesa)
@@ -5065,7 +5065,7 @@ over Xlib, including:
 (define-public xorg-server
   (package
     (name "xorg-server")
-    (version "1.20.2")
+    (version "1.20.3")
     (source
       (origin
         (method url-fetch)
@@ -5074,7 +5074,7 @@ over Xlib, including:
               name "-" version ".tar.bz2"))
         (sha256
          (base32
-          "1qnf7jdygdgbgjfm5mfr691dl8d56mpssa82mvhm8bzj92yggm8f"))
+          "1ph1j8gy5cazsq05krq9kppjx5v1sl75pbdka8ibxb1cq5kf8g0v"))
         (patches
          (list
           ;; See:
@@ -5752,7 +5752,7 @@ programs that cannot use the window system directly.")
 (define-public perl-x11-xcb
   (package
     (name "perl-x11-xcb")
-    (version "0.17")
+    (version "0.18")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -5760,7 +5760,7 @@ programs that cannot use the window system directly.")
                     "X11-XCB-" version ".tar.gz"))
               (sha256
                (base32
-                "12qyf98s5hbybmh0mblpz50c00i68srq73w5rw31m2dhclj8n96q"))))
+                "1cjpghw7cnackw20lbd7yzm222kz5bnrwz52f8ay24d1f4pwrnxf"))))
     (build-system perl-build-system)
     (arguments
      '(;; Disable parallel build to prevent a race condition.
@@ -5910,7 +5910,7 @@ basic eye-candy effects.")
 (define-public xpra
   (package
     (name "xpra")
-    (version "2.4")
+    (version "2.4.1")
     (source
      (origin
        (method url-fetch)
@@ -5918,7 +5918,7 @@ basic eye-candy effects.")
                            version ".tar.xz"))
        (sha256
         (base32
-         "0blzx231sr1ri1zwzpwzf611sq9104bv3ccvnap9pbvfrc05sfwx"))))
+         "1bhk6vydsrhlngvrv5w55arqf69cr3yw84xscnnl7km2g1iswkrs"))))
     (build-system python-build-system)
     (inputs `(("ffmpeg" ,ffmpeg)
               ("flac" ,flac)