gnu: r-tricycle: Move out of annotation packages.
* gnu/packages/bioconductor.scm (r-tricycle): Move definition out of the section containing annotation packages.master
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@ -775,43 +775,6 @@ Ensembl.")
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Ensembl.")
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(license license:artistic2.0)))
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(define-public r-tricycle
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(package
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(name "r-tricycle")
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(version "1.2.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "tricycle" version))
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(sha256
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(base32
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"19yh7yif8630j845m9rddva2z0xy4jcw9j4hvyr076jqbyxz998r"))))
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(properties `((upstream-name . "tricycle")))
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(build-system r-build-system)
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(propagated-inputs (list r-annotationdbi
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r-circular
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r-dplyr
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r-genomicranges
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r-ggplot2
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r-iranges
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r-rcolorbrewer
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r-s4vectors
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r-scater
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r-scattermore
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r-singlecellexperiment
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r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/hansenlab/tricycle")
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(synopsis "Transferable representation and inference of cell cycle")
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(description
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"The package contains functions to infer and visualize cell cycle process
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using Single-cell RNA-Seq data. It exploits the idea of transfer learning,
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projecting new data to the previous learned biologically interpretable space.
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The @code{tricycle} provides a pre-learned cell cycle space, which could be
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used to infer cell cycle time of human and mouse single cell samples. In
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addition, it also offer functions to visualize cell cycle time on different
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embeddings and functions to build new reference.")
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(license license:gpl3)))
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(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
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(package
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(name "r-txdb-dmelanogaster-ucsc-dm6-ensgene")
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@ -15424,6 +15387,43 @@ regions) and methods for visualization (e.g., survival plots, volcano plots,
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starburst plots) in order to easily develop complete analysis pipelines.")
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(license license:gpl3+)))
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(define-public r-tricycle
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(package
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(name "r-tricycle")
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(version "1.2.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "tricycle" version))
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(sha256
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(base32
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"19yh7yif8630j845m9rddva2z0xy4jcw9j4hvyr076jqbyxz998r"))))
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(properties `((upstream-name . "tricycle")))
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(build-system r-build-system)
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(propagated-inputs (list r-annotationdbi
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r-circular
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r-dplyr
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r-genomicranges
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r-ggplot2
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r-iranges
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r-rcolorbrewer
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r-s4vectors
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r-scater
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r-scattermore
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r-singlecellexperiment
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r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/hansenlab/tricycle")
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(synopsis "Transferable representation and inference of cell cycle")
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(description
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"The package contains functions to infer and visualize cell cycle process
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using Single-cell RNA-Seq data. It exploits the idea of transfer learning,
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projecting new data to the previous learned biologically interpretable space.
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The @code{tricycle} provides a pre-learned cell cycle space, which could be
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used to infer cell cycle time of human and mouse single cell samples. In
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addition, it also offer functions to visualize cell cycle time on different
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embeddings and functions to build new reference.")
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(license license:gpl3)))
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(define-public r-tximeta
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(package
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(name "r-tximeta")
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