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gnu: r-edaseq: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-edaseq): Move from here...
* gnu/packages/bioconductor.scm (r-edaseq): ...to here.
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zimoun 2021-05-21 22:25:50 +02:00 • committed by Ricardo Wurmus
parent ef954bb488
commit f6f43a2d40
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2 changed files with 40 additions and 40 deletions
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40
gnu/packages/bioconductor.scm
View file

@ -2332,6 +2332,46 @@ testing. The package also provides functions for the visualization and
exploration of the results.")
(license license:gpl3+)))
(define-public r-edaseq
(package
(name "r-edaseq")
(version "2.24.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "EDASeq" version))
(sha256
(base32
"0fznj7lsgkss1svv4rq8g87s1gmnbd7hccim41dv1c2w2nl0n2ip"))))
(properties `((upstream-name . "EDASeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-aroma-light" ,r-aroma-light)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocmanager" ,r-biocmanager)
("r-biomart" ,r-biomart)
("r-biostrings" ,r-biostrings)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-shortread" ,r-shortread)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/drisso/EDASeq")
(synopsis "Exploratory data analysis and normalization for RNA-Seq")
(description
"This package provides support for numerical and graphical summaries of
RNA-Seq genomic read data. Provided within-lane normalization procedures to
adjust for GC-content effect (or other gene-level effects) on read counts:
loess robust local regression, global-scaling, and full-quantile
normalization. Between-lane normalization procedures to adjust for
distributional differences between lanes (e.g., sequencing depth):
global-scaling and full-quantile normalization.")
(license license:artistic2.0)))
(define-public r-edger
(package
(name "r-edger")

40
gnu/packages/bioinformatics.scm
View file

@ -9196,46 +9196,6 @@ their variance is independent of the mean, and they are usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
(define-public r-edaseq
(package
(name "r-edaseq")
(version "2.24.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "EDASeq" version))
(sha256
(base32
"0fznj7lsgkss1svv4rq8g87s1gmnbd7hccim41dv1c2w2nl0n2ip"))))
(properties `((upstream-name . "EDASeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-aroma-light" ,r-aroma-light)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocmanager" ,r-biocmanager)
("r-biomart" ,r-biomart)
("r-biostrings" ,r-biostrings)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-shortread" ,r-shortread)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/drisso/EDASeq")
(synopsis "Exploratory data analysis and normalization for RNA-Seq")
(description
"This package provides support for numerical and graphical summaries of
RNA-Seq genomic read data. Provided within-lane normalization procedures to
adjust for GC-content effect (or other gene-level effects) on read counts:
loess robust local regression, global-scaling, and full-quantile
normalization. Between-lane normalization procedures to adjust for
distributional differences between lanes (e.g., sequencing depth):
global-scaling and full-quantile normalization.")
(license license:artistic2.0)))
(define-public r-interactivedisplaybase
(package
(name "r-interactivedisplaybase")