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gnu: r-genomicfeatures: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfeatures): ...to here.
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zimoun 2021-05-21 22:25:35 +02:00 • committed by Ricardo Wurmus
parent a88230a1bc
commit f78ff75b41
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2 changed files with 43 additions and 43 deletions
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43
gnu/packages/bioconductor.scm
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@ -2313,6 +2313,49 @@ junction detection, and working with the nucleotide content of the
alignments.")
(license license:artistic2.0)))
(define-public r-genomicfeatures
(package
(name "r-genomicfeatures")
(version "1.42.3")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomicFeatures" version))
(sha256
(base32
"168cf261vmcqffbzassavkjyz9a2af0l6zbv9cagkx6b1qrk3siz"))))
(properties
`((upstream-name . "GenomicFeatures")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biomart" ,r-biomart)
("r-biostrings" ,r-biostrings)
("r-dbi" ,r-dbi)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rcurl" ,r-rcurl)
("r-rsqlite" ,r-rsqlite)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/GenomicFeatures")
(synopsis "Tools for working with transcript centric annotations")
(description
"This package provides a set of tools and methods for making and
manipulating transcript centric annotations. With these tools the user can
easily download the genomic locations of the transcripts, exons and cds of a
given organism, from either the UCSC Genome Browser or a BioMart
database (more sources will be supported in the future). This information is
then stored in a local database that keeps track of the relationship between
transcripts, exons, cds and genes. Flexible methods are provided for
extracting the desired features in a convenient format.")
(license license:artistic2.0)))
(define-public r-genomicranges
(package
(name "r-genomicranges")

43
gnu/packages/bioinformatics.scm
View file

@ -7952,49 +7952,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-genomicfeatures
(package
(name "r-genomicfeatures")
(version "1.42.3")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomicFeatures" version))
(sha256
(base32
"168cf261vmcqffbzassavkjyz9a2af0l6zbv9cagkx6b1qrk3siz"))))
(properties
`((upstream-name . "GenomicFeatures")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biomart" ,r-biomart)
("r-biostrings" ,r-biostrings)
("r-dbi" ,r-dbi)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rcurl" ,r-rcurl)
("r-rsqlite" ,r-rsqlite)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/GenomicFeatures")
(synopsis "Tools for working with transcript centric annotations")
(description
"This package provides a set of tools and methods for making and
manipulating transcript centric annotations. With these tools the user can
easily download the genomic locations of the transcripts, exons and cds of a
given organism, from either the UCSC Genome Browser or a BioMart
database (more sources will be supported in the future). This information is
then stored in a local database that keeps track of the relationship between
transcripts, exons, cds and genes. Flexible methods are provided for
extracting the desired features in a convenient format.")
(license license:artistic2.0)))
(define-public r-go-db
(package
(name "r-go-db")