gnu: Add r-presto.
* gnu/packages/bioinformatics.scm (r-presto): New variable.
This commit is contained in:
		
							parent
							
								
									8e54aafa39
								
							
						
					
					
						commit
						f80824fe09
					
				
					 1 changed files with 34 additions and 0 deletions
				
			
		| 
						 | 
				
			
			@ -21,6 +21,7 @@
 | 
			
		|||
;;; Copyright © 2020 Bonface Munyoki Kilyungi <bonfacemunyoki@gmail.com>
 | 
			
		||||
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
 | 
			
		||||
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
 | 
			
		||||
;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
 | 
			
		||||
;;;
 | 
			
		||||
;;; This file is part of GNU Guix.
 | 
			
		||||
;;;
 | 
			
		||||
| 
						 | 
				
			
			@ -7417,6 +7418,39 @@ sequence.")
 | 
			
		|||
    (supported-systems '("i686-linux" "x86_64-linux"))
 | 
			
		||||
    (license license:bsd-3)))
 | 
			
		||||
 | 
			
		||||
(define-public r-presto
 | 
			
		||||
  (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
 | 
			
		||||
        (revision "0"))
 | 
			
		||||
    (package
 | 
			
		||||
      (name "r-presto")
 | 
			
		||||
      (version (git-version "1.0.0" revision commit))
 | 
			
		||||
      (source
 | 
			
		||||
       (origin
 | 
			
		||||
         (method git-fetch)
 | 
			
		||||
         (uri (git-reference
 | 
			
		||||
               (url "https://github.com/immunogenomics/presto")
 | 
			
		||||
               (commit commit)))
 | 
			
		||||
         (file-name (git-file-name name version))
 | 
			
		||||
         (sha256
 | 
			
		||||
          (base32 "1c3fmag4r4p2lvbvxlxyck9dvfw1prbwcl9665mmlx4a35750hk8"))))
 | 
			
		||||
      (properties `((upstream . "presto")))
 | 
			
		||||
      (build-system r-build-system)
 | 
			
		||||
      (propagated-inputs
 | 
			
		||||
       `(("r-data-table" ,r-data-table)
 | 
			
		||||
         ("r-deseq2" ,r-deseq2)
 | 
			
		||||
         ("r-dplyr" ,r-dplyr)
 | 
			
		||||
         ("r-matrix" ,r-matrix)
 | 
			
		||||
         ("r-rcpp" ,r-rcpp)
 | 
			
		||||
         ("r-rcpparmadillo" ,r-rcpparmadillo)
 | 
			
		||||
         ("r-reshape2" ,r-reshape2)
 | 
			
		||||
         ("r-rlang" ,r-rlang)
 | 
			
		||||
         ("r-tidyr" ,r-tidyr)))
 | 
			
		||||
      (home-page "https://github.com/immunogenomics/presto")
 | 
			
		||||
      (synopsis "Fast Functions for Differential Expression using Wilcox and AUC")
 | 
			
		||||
      (description "This package performs a fast Wilcoxon rank sum test and
 | 
			
		||||
auROC analysis.")
 | 
			
		||||
      (license license:gpl3))))
 | 
			
		||||
 | 
			
		||||
(define-public r-snapatac
 | 
			
		||||
  (package
 | 
			
		||||
    (name "r-snapatac")
 | 
			
		||||
| 
						 | 
				
			
			
 | 
			
		|||
		Reference in a new issue