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gnu: Add python-velocyto.

* gnu/packages/bioinformatics.scm (python-velocyto): New variable.
master
Ricardo Wurmus 2019-03-13 22:48:10 +01:00
parent 55a0a3c853
commit fd4c7a098a
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@ -14209,3 +14209,34 @@ short read sequences, removes errors then produces high quality unique
contigs. It then uses paired read information, if available, to retrieve the contigs. It then uses paired read information, if available, to retrieve the
repeated areas between contigs.") repeated areas between contigs.")
(license license:gpl2+))) (license license:gpl2+)))
(define-public python-velocyto
(package
(name "python-velocyto")
(version "0.17.17")
(source
(origin
(method url-fetch)
(uri (pypi-uri "velocyto" version))
(sha256
(base32
"0fgygyzqgrq32dv6a00biq1p1cwi6kbl5iqblxq1kklj6b2mzmhs"))))
(build-system python-build-system)
(propagated-inputs
`(("python-click" ,python-click)
("python-cython" ,python-cython)
("python-h5py" ,python-h5py)
("python-loompy" ,python-loompy)
("python-matplotlib" ,python-matplotlib)
("python-numba" ,python-numba)
("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-pysam" ,python-pysam)
("python-scikit-learn" ,python-scikit-learn)
("python-scipy" ,python-scipy)))
(home-page "https://github.com/velocyto-team/velocyto.py")
(synopsis "RNA velocity analysis for single cell RNA-seq data")
(description
"Velocyto is a library for the analysis of RNA velocity. Velocyto
includes a command line tool and an analysis pipeline.")
(license license:bsd-2)))