gnu: Add python-velocyto.
* gnu/packages/bioinformatics.scm (python-velocyto): New variable.master
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@ -14209,3 +14209,34 @@ short read sequences, removes errors then produces high quality unique
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contigs. It then uses paired read information, if available, to retrieve the
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contigs. It then uses paired read information, if available, to retrieve the
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repeated areas between contigs.")
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repeated areas between contigs.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public python-velocyto
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(package
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(name "python-velocyto")
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(version "0.17.17")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "velocyto" version))
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(sha256
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(base32
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"0fgygyzqgrq32dv6a00biq1p1cwi6kbl5iqblxq1kklj6b2mzmhs"))))
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(build-system python-build-system)
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(propagated-inputs
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`(("python-click" ,python-click)
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("python-cython" ,python-cython)
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("python-h5py" ,python-h5py)
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("python-loompy" ,python-loompy)
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("python-matplotlib" ,python-matplotlib)
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("python-numba" ,python-numba)
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("python-numpy" ,python-numpy)
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("python-pandas" ,python-pandas)
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("python-pysam" ,python-pysam)
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("python-scikit-learn" ,python-scikit-learn)
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("python-scipy" ,python-scipy)))
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(home-page "https://github.com/velocyto-team/velocyto.py")
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(synopsis "RNA velocity analysis for single cell RNA-seq data")
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(description
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"Velocyto is a library for the analysis of RNA velocity. Velocyto
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includes a command line tool and an analysis pipeline.")
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(license license:bsd-2)))
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