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gnu: trim-galore: Update to 0.6.1. 

* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.1.
[arguments]: Adjust patching.
master
Ricardo Wurmus 2019-03-26 16:40:18 +01:00
parent 9ac17c6242
commit fdc316f374
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1 changed files with 6 additions and 6 deletions
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gnu/packages/bioinformatics.scm
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@ -10880,17 +10880,17 @@ with narrow binding events such as transcription factor ChIP-seq.")
(define-public trim-galore (define-public trim-galore
(package (package
(name "trim-galore") (name "trim-galore")
(version "0.4.5") (version "0.6.1")
(source (source
(origin (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
(url "https://github.com/FelixKrueger/TrimGalore.git") (url "https://github.com/FelixKrueger/TrimGalore.git")
(commit version))) (commit version)))
(file-name (string-append name "-" version "-checkout")) (file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"0x5892l48c816pf00wmnz5vq0zq6170d3xc8zrxncd4jcz7h1p71")))) "1y31wbxwkm9xqzr5zv1pk5q418whnmlmgmfyxxpnl12h83m2i9iv"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:tests? #f ; no tests `(#:tests? #f ; no tests
@ -10905,10 +10905,10 @@ with narrow binding events such as transcription factor ChIP-seq.")
(string-append "$path_to_cutadapt = '" (string-append "$path_to_cutadapt = '"
(assoc-ref inputs "cutadapt") (assoc-ref inputs "cutadapt")
"/bin/cutadapt'")) "/bin/cutadapt'"))
(("\\| gzip") (("\\$compression_path = \"gzip\"")
(string-append "| " (string-append "$compression_path = \""
(assoc-ref inputs "gzip") (assoc-ref inputs "gzip")
"/bin/gzip")) "/bin/gzip\""))
(("\"gunzip") (("\"gunzip")
(string-append "\"" (string-append "\""
(assoc-ref inputs "gzip") (assoc-ref inputs "gzip")