gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.master
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@ -227,6 +227,37 @@ default." )
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based on mapping using Entrez Gene identifiers.")
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based on mapping using Entrez Gene identifiers.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-bsgenome-hsapiens-ucsc-hg19
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(package
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(name "r-bsgenome-hsapiens-ucsc-hg19")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"BSgenome.Hsapiens.UCSC.hg19_"
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version ".tar.gz"))
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(sha256
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(base32
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"1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8"))))
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(properties
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`((upstream-name . "BSgenome.Hsapiens.UCSC.hg19")))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)))
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(home-page
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"https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/")
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(synopsis "Full genome sequences for Homo sapiens")
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(description
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"This package provides full genome sequences for Homo sapiens as provided
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by UCSC (hg19, February 2009) and stored in Biostrings objects.")
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(license license:artistic2.0)))
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(define-public r-genelendatabase
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(define-public r-genelendatabase
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(package
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(package
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(name "r-genelendatabase")
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(name "r-genelendatabase")
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@ -8105,37 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and
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Stephens (1990).")
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Stephens (1990).")
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(license license:lgpl2.0+)))
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(license license:lgpl2.0+)))
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(define-public r-bsgenome-hsapiens-ucsc-hg19
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(package
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(name "r-bsgenome-hsapiens-ucsc-hg19")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"BSgenome.Hsapiens.UCSC.hg19_"
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version ".tar.gz"))
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(sha256
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(base32
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"1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8"))))
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(properties
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`((upstream-name . "BSgenome.Hsapiens.UCSC.hg19")))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)))
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(home-page
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"https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/")
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(synopsis "Full genome sequences for Homo sapiens")
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(description
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"This package provides full genome sequences for Homo sapiens as provided
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by UCSC (hg19, February 2009) and stored in Biostrings objects.")
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(license license:artistic2.0)))
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(define-public r-bsgenome-mmusculus-ucsc-mm9
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(define-public r-bsgenome-mmusculus-ucsc-mm9
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(package
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(package
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(name "r-bsgenome-mmusculus-ucsc-mm9")
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(name "r-bsgenome-mmusculus-ucsc-mm9")
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