me
/
guix
Archived
1
0
Fork 0
Code

gnu: Use HTTPS for mdc-berlin.de home pages. 

* gnu/packages/bioinformatics.scm (r-genomation, r-genomationdata, pigx-rnaseq)
(pigx-chipseq, pigx-bsseq, pigx-scrnaseq, pigx)[home-page]: Use HTTPS.
master
Tobias Geerinckx-Rice 2020-07-16 18:56:27 +02:00
parent c980589260
commit fe39c70195
No known key found for this signature in database
GPG Key ID: 0DB0FF884F556D79
1 changed files with 7 additions and 7 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

14
gnu/packages/bioinformatics.scm
View File

@ -8415,7 +8415,7 @@ reference point and sorted by a user defined feature.")
("r-seqpattern" ,r-seqpattern)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "http://bioinformatics.mdc-berlin.de/genomation/")
(home-page "https://bioinformatics.mdc-berlin.de/genomation/")
(synopsis "Summary, annotation and visualization of genomic data")
(description
"This package provides a package for summary and annotation of genomic
@ -8448,7 +8448,7 @@ genomic intervals. In addition, it can use BAM or BigWig files as input.")
(arguments `(#:substitutable? #f))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "http://bioinformatics.mdc-berlin.de/genomation/")
(home-page "https://bioinformatics.mdc-berlin.de/genomation/")
(synopsis "Experimental data for use with the genomation package")
(description
"This package contains experimental genetic data for use with the
@ -12952,7 +12952,7 @@ once. This package provides tools to perform Drop-seq analyses.")
("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc)
("python-wrapper" ,python-wrapper)
("python-pyyaml" ,python-pyyaml)))
(home-page "http://bioinformatics.mdc-berlin.de/pigx/")
(home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipeline for RNA sequencing experiments")
(description "PiGX RNAseq is an analysis pipeline for preprocessing and
reporting for RNA sequencing experiments. It is easy to use and produces high
@ -13021,7 +13021,7 @@ expression report comparing samples in an easily configurable manner.")
("kentutils" ,kentutils)))
(native-inputs
`(("python-pytest" ,python-pytest)))
(home-page "http://bioinformatics.mdc-berlin.de/pigx/")
(home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipeline for ChIP sequencing experiments")
(description "PiGX ChIPseq is an analysis pipeline for preprocessing, peak
calling and reporting for ChIP sequencing experiments. It is easy to use and
@ -13083,7 +13083,7 @@ in an easily configurable manner.")
("trim-galore" ,trim-galore)
("cutadapt" ,cutadapt)
("samtools" ,samtools)))
(home-page "http://bioinformatics.mdc-berlin.de/pigx/")
(home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Bisulfite sequencing pipeline from fastq to methylation reports")
(description "PiGx BSseq is a data processing pipeline for raw fastq read
data of bisulfite experiments; it produces reports on aggregate methylation
@ -13147,7 +13147,7 @@ methylation and segmentation.")
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-stringr" ,r-stringr)
("r-yaml" ,r-yaml)))
(home-page "http://bioinformatics.mdc-berlin.de/pigx/")
(home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipeline for single-cell RNA sequencing experiments")
(description "PiGX scRNAseq is an analysis pipeline for preprocessing and
quality control for single cell RNA sequencing experiments. The inputs are
@ -13176,7 +13176,7 @@ based methods.")
("pigx-chipseq" ,pigx-chipseq)
("pigx-rnaseq" ,pigx-rnaseq)
("pigx-scrnaseq" ,pigx-scrnaseq)))
(home-page "http://bioinformatics.mdc-berlin.de/pigx/")
(home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipelines for genomics")
(description "PiGx is a collection of genomics pipelines. It includes the
following pipelines: