From fe39c701952733cf19650898feaa78ad4337a599 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Thu, 16 Jul 2020 18:56:27 +0200 Subject: [PATCH] gnu: Use HTTPS for mdc-berlin.de home pages. * gnu/packages/bioinformatics.scm (r-genomation, r-genomationdata, pigx-rnaseq) (pigx-chipseq, pigx-bsseq, pigx-scrnaseq, pigx)[home-page]: Use HTTPS. --- gnu/packages/bioinformatics.scm | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4255df07d3..8a6be59d2a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8415,7 +8415,7 @@ reference point and sorted by a user defined feature.") ("r-seqpattern" ,r-seqpattern))) (native-inputs `(("r-knitr" ,r-knitr))) - (home-page "http://bioinformatics.mdc-berlin.de/genomation/") + (home-page "https://bioinformatics.mdc-berlin.de/genomation/") (synopsis "Summary, annotation and visualization of genomic data") (description "This package provides a package for summary and annotation of genomic @@ -8448,7 +8448,7 @@ genomic intervals. In addition, it can use BAM or BigWig files as input.") (arguments `(#:substitutable? #f)) (native-inputs `(("r-knitr" ,r-knitr))) - (home-page "http://bioinformatics.mdc-berlin.de/genomation/") + (home-page "https://bioinformatics.mdc-berlin.de/genomation/") (synopsis "Experimental data for use with the genomation package") (description "This package contains experimental genetic data for use with the @@ -12952,7 +12952,7 @@ once. This package provides tools to perform Drop-seq analyses.") ("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc) ("python-wrapper" ,python-wrapper) ("python-pyyaml" ,python-pyyaml))) - (home-page "http://bioinformatics.mdc-berlin.de/pigx/") + (home-page "https://bioinformatics.mdc-berlin.de/pigx/") (synopsis "Analysis pipeline for RNA sequencing experiments") (description "PiGX RNAseq is an analysis pipeline for preprocessing and reporting for RNA sequencing experiments. It is easy to use and produces high @@ -13021,7 +13021,7 @@ expression report comparing samples in an easily configurable manner.") ("kentutils" ,kentutils))) (native-inputs `(("python-pytest" ,python-pytest))) - (home-page "http://bioinformatics.mdc-berlin.de/pigx/") + (home-page "https://bioinformatics.mdc-berlin.de/pigx/") (synopsis "Analysis pipeline for ChIP sequencing experiments") (description "PiGX ChIPseq is an analysis pipeline for preprocessing, peak calling and reporting for ChIP sequencing experiments. It is easy to use and @@ -13083,7 +13083,7 @@ in an easily configurable manner.") ("trim-galore" ,trim-galore) ("cutadapt" ,cutadapt) ("samtools" ,samtools))) - (home-page "http://bioinformatics.mdc-berlin.de/pigx/") + (home-page "https://bioinformatics.mdc-berlin.de/pigx/") (synopsis "Bisulfite sequencing pipeline from fastq to methylation reports") (description "PiGx BSseq is a data processing pipeline for raw fastq read data of bisulfite experiments; it produces reports on aggregate methylation @@ -13147,7 +13147,7 @@ methylation and segmentation.") ("r-singlecellexperiment" ,r-singlecellexperiment) ("r-stringr" ,r-stringr) ("r-yaml" ,r-yaml))) - (home-page "http://bioinformatics.mdc-berlin.de/pigx/") + (home-page "https://bioinformatics.mdc-berlin.de/pigx/") (synopsis "Analysis pipeline for single-cell RNA sequencing experiments") (description "PiGX scRNAseq is an analysis pipeline for preprocessing and quality control for single cell RNA sequencing experiments. The inputs are @@ -13176,7 +13176,7 @@ based methods.") ("pigx-chipseq" ,pigx-chipseq) ("pigx-rnaseq" ,pigx-rnaseq) ("pigx-scrnaseq" ,pigx-scrnaseq))) - (home-page "http://bioinformatics.mdc-berlin.de/pigx/") + (home-page "https://bioinformatics.mdc-berlin.de/pigx/") (synopsis "Analysis pipelines for genomics") (description "PiGx is a collection of genomics pipelines. It includes the following pipelines: