gnu: Add r-curatedtcgadata.
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
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		|  | @ -900,6 +900,39 @@ examples' of Affymetrix data, unlike the artificial examples included in the | |||
| package @code{affy}.") | ||||
|     (license license:gpl2+))) | ||||
| 
 | ||||
| (define-public r-curatedtcgadata | ||||
|   (package | ||||
|     (name "r-curatedtcgadata") | ||||
|     (version "1.8.0") | ||||
|     (source | ||||
|      (origin | ||||
|        (method url-fetch) | ||||
|        (uri (bioconductor-uri "curatedTCGAData" version 'experiment)) | ||||
|        (sha256 | ||||
|         (base32 | ||||
|          "02y6cgihmsl9b4a9mmcdjjgjp06lpz04biyvxd3n5lk5gnqd9r3y")))) | ||||
|     (properties | ||||
|      `((upstream-name . "curatedTCGAData"))) | ||||
|     (build-system r-build-system) | ||||
|     (propagated-inputs | ||||
|      `(("r-annotationhub" ,r-annotationhub) | ||||
|        ("r-experimenthub" ,r-experimenthub) | ||||
|        ("r-hdf5array" ,r-hdf5array) | ||||
|        ("r-multiassayexperiment" ,r-multiassayexperiment) | ||||
|        ("r-s4vectors" ,r-s4vectors) | ||||
|        ("r-summarizedexperiment" ,r-summarizedexperiment))) | ||||
|     (home-page "https://bioconductor.org/packages/curatedTCGAData/") | ||||
|     (synopsis "Curated data from The Cancer Genome Atlas") | ||||
|     (description | ||||
|      "This package provides publicly available data from The Cancer Genome | ||||
| Atlas (TCGA) as @code{MultiAssayExperiment} objects. | ||||
| @code{MultiAssayExperiment} integrates multiple assays (e.g., RNA-seq, copy | ||||
| number, mutation, microRNA, protein, and others) with clinical / pathological | ||||
| data.  It also links assay barcodes with patient identifiers, enabling | ||||
| harmonized subsetting of rows (features) and columns (patients / samples) | ||||
| across the entire multi-'omics experiment.") | ||||
|     (license license:artistic2.0))) | ||||
| 
 | ||||
|  | ||||
| ;;; Packages | ||||
| 
 | ||||
|  |  | |||
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