gnu: tabixpp: Use G-expressions.
* gnu/packages/bioinformatics.scm (tabixpp)[source]: Reindent. [arguments]: Use search-input-file and search-input-directory. [source, arguments]: Rewrite using G-expressions. Do not return #t from snippets and custom phases. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>master
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@ -14292,27 +14292,26 @@ mutations from scRNA-Seq data.")
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(base32 "1k2a3vbq96ic4lw72iwp5s3mwwc4xhdffjj584yn6l9637q9j1yd"))
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(modules '((guix build utils)))
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(snippet
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`(begin
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(delete-file-recursively "htslib") #t))))
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#~(begin
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(delete-file-recursively "htslib")))))
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(build-system gnu-build-system)
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(inputs
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(list htslib zlib))
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(arguments
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`(#:tests? #f ; There are no tests to run.
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(list #:tests? #f ; There are no tests to run.
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#:phases
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(modify-phases %standard-phases
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#~(modify-phases %standard-phases
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(delete 'configure) ; There is no configure phase.
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;; The build phase needs overriding the location of htslib.
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(replace 'build
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(lambda* (#:key inputs #:allow-other-keys)
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(let ((htslib-ref (assoc-ref inputs "htslib")))
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(invoke "make"
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(string-append "HTS_LIB=" htslib-ref "/lib/libhts.a")
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(string-append "INCLUDES= -I" htslib-ref "/include/htslib")
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(string-append "HTS_LIB=" (search-input-file inputs "/lib/libhts.a"))
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(string-append "INCLUDES= -I" (search-input-directory inputs "/include/htslib"))
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"HTS_HEADERS=" ; No need to check for headers here.
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(string-append "LIBPATH=-L. -L" htslib-ref "/include"))
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(string-append "LIBPATH=-L. -L" (search-input-directory inputs "/include")))
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(invoke "g++" "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts")
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(invoke "ar" "rcs" "libtabixpp.a" "tabix.o"))))
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(invoke "ar" "rcs" "libtabixpp.a" "tabix.o")))
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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@ -14336,8 +14335,7 @@ mutations from scRNA-Seq data.")
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Description: C++ wrapper around tabix project~@
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Libs: -L${libdir} -ltabixpp~@
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Cflags: -I${includedir}~%"
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out ,version)))
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#t))))))
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out #$version)))))))))
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(home-page "https://github.com/ekg/tabixpp")
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(synopsis "C++ wrapper around tabix project")
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(description "This is a C++ wrapper around the Tabix project which abstracts
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