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59229 Commits (051a45e642ff21908375bee24d272c536096d026)

Author SHA1 Message Date
Roel Janssen e658838c62
gnu: Add r-bezier.
* gnu/packages/cran.scm (r-bezier): New variable.
2020-04-27 10:28:50 +02:00
Roel Janssen e8d435f7a2
gnu: Add r-ideoviz.
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
2020-04-27 10:24:20 +02:00
Roel Janssen df6c7f0487
gnu: Add r-ecp.
* gnu/packages/cran.scm (r-ecp): New variable.
2020-04-27 10:18:48 +02:00
Roel Janssen 8521d93854
gnu: Add r-reordercluster.
* gnu/packages/cran.scm (r-reordercluster): New variable.
2020-04-27 10:11:21 +02:00
Maxim Cournoyer 9c63165d9e
gnu: liblinphone: Move documentation and tester to separate outputs.
* gnu/packages/linphone.scm (liblinphone)[outputs]: Add a "doc" and "tester"
outputs.
[phases]: Add a separate-outputs phase.  Move the
glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases after it.
2020-04-27 00:54:44 -04:00
Maxim Cournoyer 1ae4325734
gnu: liblinphone: Fix the input type of some dependencies.
Libraries being linked to such as libxml2, libiconv and zlib should appear as
'inputs' rather than 'native-inputs'.

* gnu/packages/linphone.scm (liblinphone)[native-inputs]: Move libiconv,
libxml2 and zlib to...
[inputs]: ...here.  Move eudev, python-pystache and python-six to
native-inputs.
2020-04-27 00:54:30 -04:00
Maxim Cournoyer 8472c26c25
gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs.
Icon themes and theme engines are best left for the users to select and
install themselves.

* gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme.
[propagated-inputs]: Remove murrine.
2020-04-27 00:54:30 -04:00
Brice Waegeneire 3b177a6c33
gnu: Add loadable module to wireguard-linux-compat.
* gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace
'gnu-build-system' by 'linux-module-build-system'.
[outputs]: Add 'kernel-patch'.
[arguments]: Adjust the build system. Add phases 'change-directory' and
'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to
'install-patch'.
[description]: Mention the loadable module.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-26 18:24:28 -04:00
Ludovic Courtès ccbc427f9a
channels: Use a declarative profile.
* guix/channels.scm (package-cache-file): Use 'profile' instead of
'profile-derivation'.
2020-04-26 22:49:49 +02:00
Ludovic Courtès 0e5c2d5e14
services: system: Initial entries are non-monadic.
* gnu/system.scm (operating-system-directory-base-entries): Return a
regular, non-monadic value.
* gnu/services.scm (system-derivation): Adjust accordingly.
* gnu/system/linux-container.scm (container-essential-services): Likewise.
2020-04-26 22:49:49 +02:00
Ludovic Courtès 45c84c8f6f
pack: Use a declarative profile.
* guix/scripts/pack.scm (guix-pack): Use a declarative profile instead
of 'profile-derivation'.
2020-04-26 22:49:48 +02:00
Ludovic Courtès 45bd91334f
services: profile: Use a declarative profile.
* gnu/services.scm (packages->profile-entry): Use 'profile' instead of
'profile-derivation'.
2020-04-26 22:49:48 +02:00
Ludovic Courtès cda751105e
system: 'operating-system-directory-base-entries' uses 'profile'.
* gnu/system.scm (operating-system-directory-base-entries): Use a
declarative profile instead of 'profile-derivation'.
2020-04-26 22:49:48 +02:00
Ludovic Courtès ef674a24c5
profiles: Add lowerable <profile> record type.
* guix/profiles.scm (<profile>): New record type.
* tests/profiles.scm ("<profile>"): New test.
2020-04-26 22:49:48 +02:00
Roel Janssen 1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description.
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
2020-04-26 21:47:19 +02:00
Roel Janssen 63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37.
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
2020-04-26 21:34:49 +02:00
Maxim Cournoyer b58a22e5b7
gnu: Add hackneyed-x11-cursors.
* gnu/packages/xorg.scm (hackneyed-x11-cursors): New variable.
2020-04-26 15:32:10 -04:00
Roel Janssen 886125d791
gnu: Add r-motifbreakr.
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
2020-04-26 21:24:03 +02:00
Roel Janssen 3699bcf54a
gnu: Add r-motifdb.
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
2020-04-26 21:07:45 +02:00
Roel Janssen ec20858a6a
gnu: Add r-pasilla.
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
2020-04-26 21:02:00 +02:00
Christopher Baines f476238431
gnu: guile3.0-chickadee: Rename to guile3.0-chickadee.
This avoids having to packages, both called guile-chickadee.

* gnu/packages/game-development.scm (guile3.0-chickadee)[name]: Change from
guile-chickadee to guile3.0-chickadee.
2020-04-26 19:44:33 +01:00
Christopher Baines 53aa66c3df
reconfigure: Don't call build-derivations for upgrade-services test
This commit adjusts the upgrade-services system test to not build anything
when computing the derivation for the system test.  I came across this when
looking at issues computing the system test derivations to store in the Guix
Data Service.

* gnu/tests/reconfigure.scm (run-upgrade-services-test): Remove the use of,
and definition for ensure-service-file.
2020-04-26 19:41:56 +01:00
Christopher Baines 928dc1bb1c
substitute: Close port at the end of http-multiple-get.
* guix/scripts/substitute.scm (http-multiple-get): Add close-port call.
2020-04-26 19:37:25 +01:00
Christopher Baines d5abb3049e
substitute: Make http-multiple-get batch size configurable.
* guix/scripts/substitute.scm (http-multiple-get): Add batch-size parameter.
2020-04-26 19:37:24 +01:00
Christopher Baines 121191f23a
substitute: Use the same port for multiple request batches.
In http-multiple-get.

* guix/scripts/substitute.scm (http-multiple-get): Switch port to p in one
occurrence.
2020-04-26 19:37:22 +01:00
Lars-Dominik Braun 910bf1f7a1
gnu: Add tarsplitter.
* gnu/packages/compression.scm (tarsplitter): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-26 21:07:43 +03:00
Leo Famulari ca4b55882a
gnu: Add rav1e.
* gnu/packages/video.scm (rav1e): New variable.
* gnu/packages/rust-apps.scm (rust-cbindgen-0.12, rust-cargo-c): New
variables.
* gnu/packages/crates-io.scm: Various new packages and upgrades.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-26 19:57:46 +03:00
Efraim Flashner ee8de73814
gnu: python-scanpy: Update to 1.4.6.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
2020-04-26 15:03:50 +03:00
Marius Bakke 2b829898c7
gnu: python-publicsuffix2: Adjust for Guile 3.0.
* gnu/packages/python-web.scm (python-publicsuffix2): Provide explicit
destination in calls to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 52bdd30407
gnu: nim: Adjust for Guile 3.0.
* gnu/packages/nim.scm (nim)[arguments]: Provide explicit destination in calls
to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 05e3ed302f
gnu: tpacpi-bat: Adjust for Guile 3.0.
* gnu/packages/linux.scm (tpacpi-bat)[arguments]: Provide explicit destination
in calls to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 30d0f7fa8f
gnu: nmoldyn: Adjust for Guile 3.0.
* gnu/packages/chemistry.scm (nmoldyn)[arguments]: Provide explicit
destination in calls to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 02de4b1da1
gnu: calcurse: Adjust for Guile 3.0.
* gnu/packages/calcurse.scm (calcurse)[arguments]: Provide explicit
destination in calls to FORMAT.
2020-04-26 13:31:15 +02:00
Marius Bakke f989dffd2c
gnu: thinkfan: Adjust for Guile 3.0.
* gnu/packages/linux.scm (thinkfan)[arguments]: Provide explicit destination
in calls to FORMAT (destination is no longer optional with Guile 3).
2020-04-26 13:31:15 +02:00
Eric Brown 660611e5f6
gnu: Add sylpheed.
* gnu/packages/mail.scm (sylpheed): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:47:19 +02:00
Raghav Gururajan 0745e28d66
gnu: Add xarchiver.
* gnu/packages/compression (xarchiver): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:25:59 +02:00
Giacomo Leidi 0bf66cbb72
gnu: Add python-osc.
* gnu/packages/python-xyz.scm (python-osc): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:15:09 +02:00
Evan Straw bb85018ceb
gnu: hugin: Update to 2019.2.0.
* gnu/packages/photo.scm (hugin): Update to 2019.2.0.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:14:49 +02:00
Arun Isaac 018114baa7
gnu: maradns: Fix cross compilation.
* gnu/packages/dns.scm (maradns)[arguments]: Build make_32bit_tables for the
host.
2020-04-26 15:14:46 +05:30
Marius Bakke 796b387bc2
vm: Remove unused import.
* gnu/system/vm.scm: Do not import (gnu packages make-bootstrap).
2020-04-26 11:27:06 +02:00
Efraim Flashner 186f99f0f7
gnu: perl-glib: Update to 1.3292.
* gnu/packages/glib.scm (perl-glib): Update to 1.3292.
2020-04-26 10:22:14 +03:00
Leo Famulari a17e5092bc
gnu: svt-av1: Update to 0.8.2.
* gnu/packages/video.scm (svt-av1): Update to 0.8.2.
2020-04-25 22:26:49 -04:00
Vagrant Cascadian 9b7e41f2d7
gnu: arm-trusted-firmware: Update to 2.3.
* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.3.
  [source]: Remove hdcp patch.
* gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch: Remove patch.
* gnu/local.mk: Update accordingly.
2020-04-25 17:08:52 -07:00
Oleg Pykhalov 396eb9e1a9
gnu: Add sbcl-stumpwm-globalwindows.
* gnu/packages/wm.scm (sbcl-stumpwm-globalwindows): New variable.
2020-04-26 01:59:33 +03:00
Nicolas Goaziou d558de8048
doc: guix: Fix some markup.
* doc/guix.texi (Build Systems):
(Base Services):
(X Window):
(Printing Services):
(Mail Services):
(Messaging Services):
(LDAP Services):
(Virtualization Services):
(Version Control Services): Use @samp, @code and double quotes where
appropriate.
2020-04-25 23:35:44 +02:00
Nicolas Goaziou 128b136ec6
doc: cookbook: Fix quotes.
* doc/guix-cookbook.texi (Basic setup with manifests):
(Default profile):
(The benefits of manifests): Use proper quotes in regular texts.
2020-04-25 23:10:16 +02:00
Raghav Gururajan 5cca16968e
gnu: pavucontrol: Fix icons.
* gnu/packages/pulseaudio.scm (pavucontrol): Fix icons.
[build-system]: Use glib-or-gtk-build-system instead of gnu-build-system.
[inputs]: Add adwaita-icon-theme.  Re-order inputs.

Since the adwaita icon theme is hard-coded in the application, there is
no choice for the user anyway. So added adwaita-icon-theme to inputs and
changed build-system to glib-or-gtk to fix loading of icons.
2020-04-25 23:01:29 +02:00
Boris A. Dekshteyn 3a5d1c9b6b
gnu: fontmanager: Update to 0.7.7.
* gnu/packages/fontutils.scm (fontmanager): Update to 0.7.7.
2020-04-25 22:54:11 +02:00
Holger Peters b0ec8c675e
gnu: python-webob: Update to 1.8.3
* gnu/packages/python-web.scm (python-webob): Update to 1.8.3.
2020-04-25 22:38:11 +02:00
Holger Peters 82bd276d60
gnu: python-pastedeploy: Update to 2.1.0
* gnu/packages/python-web.scm (python-pastedeploy): Update to 2.1.0.
[arguments]: Add test-target.
[native-inputs]: Replace python-nose with python-pytest and python-pytest-runner.
2020-04-25 22:38:11 +02:00