me
/
guix
Archived
1
0
Fork 0
Commit Graph

67300 Commits (0571aa7abf262f617add727ac03e3bf63d41ae6d)

Author SHA1 Message Date
Nicolas Goaziou 56613cc619
gnu: Add rust-minus-3.
* gnu/packages/crates-io.scm (rust-minus-3): New variable.
2021-03-12 16:09:37 +01:00
Nicolas Goaziou 1fcaac7941
gnu: rust-surf-2: Update to 2.2.0.
* gnu/packages/crates-io.scm (rust-surf-2): Update to 2.2.0.
2021-03-12 16:09:37 +01:00
Nicolas Goaziou 7d29bfd567
gnu: rust-http-client-6: Update to 6.3.4.
* gnu/packages/crates-io.scm (rust-http-client-6): Update to 6.3.4.
2021-03-12 16:09:36 +01:00
Nicolas Goaziou 10a1ab0d26
gnu: Add rust-async-tls-0.10.
* gnu/packages/crates-io.scm (rust-async-tls-0.10): New variable.
2021-03-12 16:09:36 +01:00
Nicolas Goaziou 6fe6ab50bd
gnu: rust-webpki-0.21: Update to 0.21.4.
* gnu/packages/crates-io.scm (rust-webpki-0.21): Update to 0.21.4.
2021-03-12 16:09:36 +01:00
Nicolas Goaziou a7c8060360
gnu: rust-ring-0.16: Update to 0.16.20.
* gnu/packages/crates-io.scm (rust-ring-0.16): Update to 0.16.20.
[arguments]: Skip tests.
2021-03-12 16:09:35 +01:00
Nicolas Goaziou 0f0589b8cd
gnu: Add rust-deadpool-0.7.
* gnu/packages/crates-io.scm (rust-deadpool-0.7): New variable.
2021-03-12 16:09:35 +01:00
Nicolas Goaziou b89714b40a
gnu: rust-url-2: Update to 2.2.1.
* gnu/packages/crates-io.scm (rust-url-2): Update to 2.2.1.
2021-03-12 16:09:09 +01:00
Ludovic Courtès 97b45977f4
gnu: guile-zlib: Update to 0.1.0.
* gnu/packages/guile.scm (guile-zlib): Update to 0.1.0.
2021-03-12 15:59:45 +01:00
Sharlatan Hellseher 2e5ac371e7
gnu: Add sbcl-stumpwm-disk.
* gnu/packages/wm.scm: (sbcl-stumpwm-disk): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-03-12 15:06:51 +01:00
Sharlatan Hellseher 77ee8af58c
gnu: stumpwm-contrib: Update to 0.0.1-3.a7dc1c.
* gnu/packages/wm.scm (stumpwm-contrib): Update to 0.0.1-3.a7dc1c.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-03-12 15:06:51 +01:00
Guillaume Le Vaillant a56b331e07
gnu: Add gnuais.
* gnu/packages/radio.scm (gnuais): New variable.
2021-03-12 15:06:50 +01:00
zimoun df6b3c25bb
gnu: r-systempiper: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-systempiper): Move from here...
* gnu/packages/bioconductor.scm (r-systempiper): ...to here.
2021-03-12 14:45:55 +01:00
zimoun 8957efa8ef
gnu: r-shortread: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-shortread): Move from here...
* gnu/packages/bioconductor.scm (r-shortread): ...to here.
2021-03-12 14:45:54 +01:00
zimoun 2a97057688
gnu: r-gostats: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gostats): Move from here...
* gnu/packages/bioconductor.scm (r-gostats): ...to here.
2021-03-12 14:45:54 +01:00
zimoun 4e7cf96c9f
gnu: r-category: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-category): Move from here...
* gnu/packages/bioconductor.scm (r-category): ...to here.
2021-03-12 14:45:54 +01:00
zimoun 031fdda47a
gnu: r-gseabase: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gseabase): Move from here...
* gnu/packages/bioconductor.scm (r-gseabase): ...to here.
2021-03-12 14:45:54 +01:00
zimoun f44079bc21
gnu: r-rbgl: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-rbgl): Move from here...
* gnu/packages/bioconductor.scm (r-rbgl): ...to here.
2021-03-12 14:45:54 +01:00
zimoun ff92c2873c
gnu: r-annotationforge: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-annotationforge): Move from here...
* gnu/packages/bioconductor.scm (r-annotationforge): ...to here.
2021-03-12 14:45:53 +01:00
zimoun d769b10714
gnu: r-dexseq: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-dexseq): Move from here...
* gnu/packages/bioconductor.scm (r-dexseq): ...to here.
2021-03-12 14:45:53 +01:00
zimoun 373545855d
gnu: r-deseq2: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-deseq2): Move from here...
* gnu/packages/bioconductor.scm (r-deseq2): ...to here.
2021-03-12 14:45:53 +01:00
zimoun a35ea5fed9
gnu: r-genefilter: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genefilter): Move from here...
* gnu/packages/bioconductor.scm (r-genefilter): ...to here.
2021-03-12 14:45:53 +01:00
Ricardo Wurmus 323aec6ad9
gnu: r-bioassayr: Update home page.
* gnu/packages/bioconductor.scm (r-bioassayr)[home-page]: Follow permanent
redirect.
2021-03-12 14:41:15 +01:00
zimoun 2528cad451
gnu: r-bioassayr: Update to 1.28.2.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.2.
2021-03-12 14:41:14 +01:00
zimoun 8c8d365ca3
gnu: r-chemminer: Update to 3.42.2.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.2.
2021-03-12 14:41:14 +01:00
zimoun 4f617bfb8e
gnu: r-circrnaprofiler: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.4.2.
2021-03-12 14:41:14 +01:00
Lars-Dominik Braun 8a8e8198ec
gnu: Add r-puniform.
* gnu/packages/statistics.scm (r-puniform): New variable.
2021-03-12 14:34:22 +01:00
Lars-Dominik Braun 28df54d776
gnu: Add r-clubsandwich.
* gnu/packages/statistics.scm (r-clubsandwich): New variable.
2021-03-12 14:34:20 +01:00
Lars-Dominik Braun 3a82f1fba2
gnu: Add r-quantpsyc.
* gnu/packages/statistics.scm (r-quantpsyc): New variable.
2021-03-12 14:34:19 +01:00
Lars-Dominik Braun 23bfd152c2
gnu: Add r-ez.
* gnu/packages/cran.scm (r-ez): New variable.
2021-03-12 14:34:18 +01:00
Lars-Dominik Braun 8a51be3cdd
gnu: Add r-prereg.
* gnu/packages/cran.scm (r-prereg): New variable.
2021-03-12 14:34:14 +01:00
Ricardo Wurmus 456355c253
gnu: Add python-upsetplot.
* gnu/packages/python-science.scm (python-upsetplot): New variable.
2021-03-12 13:56:12 +01:00
Ricardo Wurmus 4d0fdde344
gnu: Add python-statannot.
* gnu/packages/python-science.scm (python-statannot): New variable.
2021-03-12 13:35:02 +01:00
Pierre Neidhardt 5fa4814b4f
gnu: lisp-repl-core-dumper: Update to 0.7.0.
* gnu/packages/lisp.scm (lisp-repl-core-dumper): Update to 0.7.0.
2021-03-12 13:09:36 +01:00
Ricardo Wurmus ddc1cddded
gnu: snakemake: Update to 5.32.2.
* gnu/packages/python-xyz.scm (snakemake): Update to 5.32.2.
[arguments]: Adjust patch in call-wrapper-not-wrapped-snakemake.
2021-03-12 13:03:33 +01:00
Mark H Weaver 825cc7e0d4
gnu: gnome-shell: Fix CVE-2020-17489.
* gnu/packages/patches/gnome-shell-CVE-2020-17489.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-shell)[source]: Add patch.
2021-03-12 06:08:33 -05:00
Mark H Weaver db7c3410d5
gnu: gnome-shell: Update to 3.34.5.
* gnu/packages/gnome.scm (gnome-shell): Update to 3.34.5.
2021-03-12 06:08:33 -05:00
Mark H Weaver f5e1909d9f
gnu: gvfs: Update to 1.40.2 [security fixes].
Includes fixes for CVE-2019-12447, CVE-2019-12448, CVE-2019-12449,
and CVE-2019-12795.

* gnu/packages/gnome.scm (gvfs): Update to 1.40.2.
2021-03-12 06:08:33 -05:00
Mark H Weaver bc16eacc99
gnu: cairo: Fix CVE-2018-19876 and CVE-2020-35492.
* gnu/packages/patches/cairo-CVE-2018-19876.patch,
gnu/packages/patches/cairo-CVE-2020-35492.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gtk.scm (cairo)[replacement]: New field.
(cairo/fixed): New variable.
(cairo-xcb): Use package/inherit.
2021-03-12 06:08:33 -05:00
Mark H Weaver 453e101fc3
gnu: gdk-pixbuf: Fix CVE-2020-29385.
* gnu/packages/patches/gdk-pixbuf-CVE-2020-29385.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gdk-pixbuf)[replacement]: New field.
(gdk-pixbuf/fixed): New variable.
(gdk-pixbuf+svg): Use package/inherit.
2021-03-12 06:08:32 -05:00
Ricardo Wurmus 57853d69fe
gnu: java-openjfx-graphics: Install native libraries.
* gnu/packages/java.scm (java-openjfx-graphics)[arguments]: Add phase
copy-missing-file and build-native.
[native-inputs]: Add missing source file.
2021-03-12 10:32:13 +01:00
Mark H Weaver 5a06b83fc9
gnu: glib: Fix CVE-2021-28153.
* gnu/packages/patches/glib-CVE-2021-28153.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/glib.scm (glib/fixed): Add the new patch.
2021-03-12 01:44:26 -05:00
Leo Famulari c3a7537396
gnu: certbot, python-acme: Update to 1.13.0.
* gnu/packages/tls.scm (python-acme): Update to 1.13.0.
[native-inputs]: Remove python-mock.
[propagated-inputs]: Remove python-six.
(certbot): Update to 1.13.0.
[propagated-inputs]: Remove python-six.
[arguments]: Remove 'build-documentation' phase.
2021-03-11 21:41:47 -05:00
Kyle Meyer 09c05fde52
gnu: git-annex: Update to 8.20210310.
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20210310.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-03-11 18:06:39 -05:00
Leo Famulari df632e3225
gnu: linux-libre 4.4: Update to 4.4.261.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.261.
(linux-libre-4.4-pristine-source): Update hash.
2021-03-11 18:06:39 -05:00
Leo Famulari 2c5aff6160
gnu: linux-libre 4.9: Update to 4.9.261.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.261.
(linux-libre-4.9-pristine-source): Update hash.
2021-03-11 18:06:39 -05:00
Leo Famulari 0988cbaeab
gnu: linux-libre 4.14: Update to 4.14.225.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.225.
(linux-libre-4.14-pristine-source): Update hash.
2021-03-11 18:06:39 -05:00
Leo Famulari 129db4f104
gnu: linux-libre 4.19: Update to 4.19.180.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.180.
(linux-libre-4.19-pristine-source): Update hash.
2021-03-11 18:06:39 -05:00
Leo Famulari a4905b424e
gnu: linux-libre 5.4: Update to 5.4.105.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.105.
(linux-libre-5.4-pristine-source): Update hash.
2021-03-11 18:06:38 -05:00
Leo Famulari 234aa6c964
gnu: linux-libre 5.10: Update to 5.10.23.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.23.
(linux-libre-5.10-pristine-source): Update hash.
2021-03-11 18:06:38 -05:00
Leo Famulari c39d8a11c0
gnu: linux-libre: Update to 5.11.6.
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.6.
(linux-libre-5.11-pristine-source): Update hash.
2021-03-11 18:06:38 -05:00
Xinglu Chen 42d5efc001
gnu: guile-curl: Update to 0.9.
* gnu/packages/curl.scm (guile-curl): Update to 0.9.
[#:phases]: Update path to module.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-11 23:22:04 +01:00
Tobias Geerinckx-Rice ebd5000263
gnu: wireshark: Update to 3.4.4.
* gnu/packages/networking.scm (wireshark): Update to 3.4.4.
2021-03-11 23:11:58 +01:00
Tobias Geerinckx-Rice d3e2ad740f
gnu: hangups: Update to 0.4.13.
* gnu/packages/messaging.scm (hangups): Update to 0.4.13.
2021-03-11 23:11:58 +01:00
Greg Hogan 47093ca4cd
gnu: fmt: Update to 7.1.3.
* gnu/packages/pretty-print.scm (fmt): Update to 7.1.3.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-03-11 23:11:58 +01:00
Tobias Geerinckx-Rice c518925391
gnu: btrfs-progs: Update to 5.11.
* gnu/packages/linux.scm (btrfs-progs): Update to 5.11.
2021-03-11 23:11:58 +01:00
Tobias Geerinckx-Rice 8a9d3e9420
gnu: libdatrie: Update to 0.2.13.
* gnu/packages/gtk.scm (libdatrie): Update to 0.2.13.
2021-03-11 23:11:58 +01:00
Tobias Geerinckx-Rice ed6900f974
gnu: libinih: Update to 53.
* gnu/packages/linux.scm (libinih): Update to 53.
2021-03-11 23:11:57 +01:00
Léo Le Bouter 0aaac779d4
gnu: flatpak: Update to 1.10.2 [fixes CVE-2021-21381].
* gnu/packages/package-management.scm (flatpak): Update to 1.10.2.
2021-03-11 22:58:05 +01:00
Efraim Flashner aa983626a2
gnu: mongodb: Update comment about package license.
* gnu/packages/databases.scm (mongodb): Adjust the comment about the
licensing status of the package, there are still older branches
receiving updates under the AGPL license.
2021-03-11 23:26:01 +02:00
Efraim Flashner 2f9132e2e0
Revert "Revert "gnu: mongodb: Update to 3.4.24 [security fixes].""
This reverts commit feff80cec3.

I was mistaken, there are still branches of mongodb which are still
licensed under the AGPL3
2021-03-11 23:23:00 +02:00
Pierre Neidhardt 6dda223631
gnu: Add computable-reals.
* gnu/packages/lisp-xyz.scm (cl-computable-reals, ecl-computable-reals,
sbcl-computable-reals): New variables.
2021-03-11 21:11:51 +01:00
Raghav Gururajan 340e6dd51b
gnu: Add python-praw.
* gnu/packages/python-web.scm (python-raw): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-11 20:48:05 +02:00
Raghav Gururajan 532fc2fbaf
gnu: Add python-prawcore.
* gnu/packages/python-web.scm (python-prawcore): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-11 20:48:03 +02:00
Raghav Gururajan cfa564bcef
gnu: Add python-testfixtures.
* gnu/packages/python-check.scm (python-testfixtures): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-11 20:48:01 +02:00
Raghav Gururajan ce2637c003
gnu: Add python-betamax-serializers.
* gnu/packages/python-web.scm (python-betamax-serializers): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-11 20:47:55 +02:00
Tobias Geerinckx-Rice c47f0dea8c
gnu: jasper: Update to 2.0.26.
* gnu/packages/image.scm (jasper): Update to 2.0.26.
2021-03-11 18:06:56 +01:00
Tobias Geerinckx-Rice 2e2a3b248b
gnu: thermald: Update to 2.4.3.
* gnu/packages/admin.scm (thermald): Update to 2.4.3.
2021-03-11 18:06:56 +01:00
Tobias Geerinckx-Rice b8f0d11f76
gnu: doctest: Update to 2.4.5.
* gnu/packages/check.scm (doctest): Update to 2.4.5.
2021-03-11 18:06:56 +01:00
Tobias Geerinckx-Rice affeb3def7
gnu: jetring: Update to 0.30.
* gnu/packages/gnupg.scm (jetring): Update to 0.30.
2021-03-11 18:06:56 +01:00
Tobias Geerinckx-Rice 444a38b991
gnu: memkind: Remove duplicate COPYING file.
* gnu/packages/disk.scm (memkind)[arguments]: Add the standard
"--docdir=" location to #:configure-flags.
2021-03-11 18:06:56 +01:00
Tobias Geerinckx-Rice 36c716e1c5
gnu: memkind: Update to 1.11.0.
* gnu/packages/disk.scm (memkind): Update to 1.11.0.
2021-03-11 18:06:55 +01:00
raid5atemyhomework via Guix-patches via 495a68e8e5
gnu: Update zfs to 2.0.4.
Mostly FreeBSD fixes, some documentation changes and corrections, and a few small bugfixes.

Tested with `guix build` only, no in-depth testing done.

From 6037ac6f797f37abb579278a0d30cd16e6876ec6 Mon Sep 17 00:00:00 2001
From: raid5atemyhomework <raid5atemyhomework@protonmail.com>
Date: Thu, 11 Mar 2021 12:43:58 +0000
Subject: [PATCH] gnu: Update zfs to 2.0.4.

* gnu/packages/file-systems.scm (zfs): Update to 2.0.4, rename to
OpenZFS.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-03-11 18:06:55 +01:00
Tobias Geerinckx-Rice 828b4a9156
gnu: fio: Update to 3.26.
* gnu/packages/benchmark.scm (fio): Update to 3.26.
2021-03-11 18:06:55 +01:00
Ricardo Wurmus f0971dfd61
gnu: Add java-openjfx-controls.
* gnu/packages/java.scm (java-openjfx-controls): New variable.
2021-03-11 17:30:31 +01:00
Nicolas Goaziou 54d4b7f3ab
gnu: emacs-counsel: Update to 0.13.4.
* gnu/packages/emacs-xyz.scm (emacs-counsel): Update to 0.13.4.
[source]: Update URI.
2021-03-11 17:04:48 +01:00
Nicolas Goaziou db5eb8c38f
gnu: emacs-swiper: Update to 0.13.4.
* gnu/packages/emacs-xyz.scm (emacs-swiper): Update to 0.13.4.
[source]: Update URI.
2021-03-11 17:03:02 +01:00
Nicolas Goaziou 49a8f88fe1
gnu: emacs-ivy: Update to 0.13.4.
* gnu/packages/emacs-xyz.scm (emacs-ivy): Update to 0.13.4.
2021-03-11 17:02:05 +01:00
Nicolas Goaziou 752843d923
gnu: emacs-project: Fix build.
* gnu/packages/emacs-xyz.scm (emacs-project)[source]: Fix URI.
2021-03-11 16:46:11 +01:00
Nicolas Goaziou e55d35899f
gnu: emacs-map: Update to 3.0.
* gnu/packages/emacs-xyz.scm (emacs-map): Update to 3.0.
2021-03-11 16:45:39 +01:00
Nicolas Goaziou 8960f23de8
gnu: emacs-project: Update to 0.5.4.
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.5.4.
2021-03-11 16:44:09 +01:00
Nicolas Goaziou b814228c8b
gnu: emacs-posframe: Update to 0.8.8.
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 0.8.8.
2021-03-11 16:42:52 +01:00
Efraim Flashner 5ae7414860
gnu: Add bandage.
* gnu/packages/bioinformatics.scm (bandage): New variable.
2021-03-11 16:54:38 +02:00
Efraim Flashner f197964689
gnu: mongodb: Add comment about future package versions.
* gnu/packages/databases.scm (mongodb): Add comment that the license of
the package changed after the packaged version and that it shouldn't be
updated.
2021-03-11 15:17:26 +02:00
Efraim Flashner feff80cec3
Revert "gnu: mongodb: Update to 3.4.24 [security fixes]."
This reverts commit e5f89570c1.

After this version mongodb switched to the Server Side Public License
(https://www.mongodb.com/licensing/server-side-public-license) which is
not a FOSS license.
2021-03-11 15:13:55 +02:00
Mark H Weaver 21b3b75515
gnu: glib: Fix CVE-2021-27218 and CVE-2021-27219.
* gnu/packages/patches/glib-CVE-2021-27218.patch,
gnu/packages/patches/glib-CVE-2021-27219-01.patch,
gnu/packages/patches/glib-CVE-2021-27219-02.patch,
gnu/packages/patches/glib-CVE-2021-27219-03.patch,
gnu/packages/patches/glib-CVE-2021-27219-04.patch,
gnu/packages/patches/glib-CVE-2021-27219-05.patch,
gnu/packages/patches/glib-CVE-2021-27219-06.patch,
gnu/packages/patches/glib-CVE-2021-27219-07.patch,
gnu/packages/patches/glib-CVE-2021-27219-08.patch,
gnu/packages/patches/glib-CVE-2021-27219-09.patch,
gnu/packages/patches/glib-CVE-2021-27219-10.patch,
gnu/packages/patches/glib-CVE-2021-27219-11.patch,
gnu/packages/patches/glib-CVE-2021-27219-12.patch,
gnu/packages/patches/glib-CVE-2021-27219-13.patch,
gnu/packages/patches/glib-CVE-2021-27219-14.patch,
gnu/packages/patches/glib-CVE-2021-27219-15.patch,
gnu/packages/patches/glib-CVE-2021-27219-16.patch,
gnu/packages/patches/glib-CVE-2021-27219-17.patch,
gnu/packages/patches/glib-CVE-2021-27219-18.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/glib.scm (glib)[replacement]: New field.
(glib/fixed): New variable.
2021-03-11 06:21:13 -05:00
Léo Le Bouter 500189b4d2
gnu: go: Update to 1.14.15 [security fixes].
This update will cause more than 300 packages to be rebuilt but due to how Go
works we can't graft to fix the issue since we actually need to rebuild
dependents so they include a newer version of the Go standard
library. Considering the CVEs that this fixes are in great part in the Go
standard library we can only proceed and push directly to master.

* gnu/packages/golang.scm (go): Update to 1.14.15.
[arguments]: Remove more cgo-related failing tests.
2021-03-11 11:02:23 +01:00
Pierre Langlois fd2751f89f
gnu: emacs-password-store: 2.1.4-1.918992c [security fix].
Includes a fix to no longer store clear passwords in a temporary file, see
commit 7aa17d099577730d2d65332896b74d5865b22abf for details.

* gnu/packages/emacs-xyz.scm (emacs-password-store): Update to
2.1.4-1.918992c.
[propagated-inputs]: Remove emacs-f, add emacs-auth-source-pass.
2021-03-11 09:54:44 +00:00
Léo Le Bouter 4a8b529ce1
gnu: openssl: Update to 1.1.1j [security fixes].
* gnu/packages/tls.scm (openssl/fixed): New variable.
(openssl)[replacement]: Graft.
2021-03-11 05:38:57 +01:00
Léo Le Bouter ee8e4ba7aa
gnu: openvpn: Update to 2.5.1 [security fixes].
Non-exhaustively, fixes CVE-2020-7224.

* gnu/packages/vpn.scm (openvpn): Update to 2.5.1.
2021-03-11 05:31:54 +01:00
Léo Le Bouter 826428ab5b
gnu: libx11: Update to 1.6.12 [fixes CVE-2020-14363].
* gnu/packages/xorg.scm (libx11/fixed): New variable.
(libx11)[replacement]: Graft.
2021-03-11 05:25:43 +01:00
Léo Le Bouter 9d74b66de7
gnu: docker-cli: Fix source hash.
This is a follow-up to commit 83cda00bc6.

* gnu/packages/docker.scm (docker-cli): Fix source hash caused by cascading
%docker-version variable changes.
2021-03-11 04:36:22 +01:00
Léo Le Bouter 46a7f82882
gnu: gnome-autoar: Update to 0.3.0 [fixes CVE-2020-36241].
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.3.0.
2021-03-11 04:00:50 +01:00
Léo Le Bouter 2bcfb944bd
gnu: zstd-1.4.9: Fix i686-linux and arm/aarch64-linux builds.
It's only a graft added for security so disabling tests on there seems
acceptable.

See: <https://lists.gnu.org/archive/html/guix-devel/2021-03/msg00130.html>.

* gnu/packages/compression.scm (zstd-1.4.9)[arguments]: Substitute keyword
arguments of 'zstd' to disable tests.
2021-03-11 02:58:28 +01:00
Léo Le Bouter 1acfda2f94
gnu: geary: Fix CVE-2020-24661.
* gnu/packages/patches/geary-CVE-2020-24661.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (geary): Apply it.
2021-03-11 02:32:19 +01:00
Léo Le Bouter be31314638
gnu: gthumb: Update to 3.10.2 [security fixes].
Non-exhaustively, fixes CVE-2019-20326.

* gnu/packages/gnome.scm (gthumb): Update to 3.10.2.
2021-03-11 02:19:53 +01:00
Léo Le Bouter e940f6d801
gnu: libcroco: Fix CVE-2020-12825.
* gnu/packages/patches/libcroco-CVE-2020-12825.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (libcroco/fixed): New variable. Apply patch.
(libcroco)[replacement]: Graft.
2021-03-11 02:02:24 +01:00
Léo Le Bouter a2943e36c7
gnu: evolution: Fix CVE-2020-11879.
* gnu/packages/patches/evolution-CVE-2020-11879.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (evolution): Apply it.
2021-03-11 01:19:40 +01:00
Léo Le Bouter c35f87bb1a
gnu: evolution-data-server: Fix CVE-2020-14928 and CVE-2020-16117.
* gnu/packages/patches/evolution-data-server-CVE-2020-14928.patch,
gnu/packages/patches/evolution-data-server-CVE-2020-16117.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/gnome.scm (evolution-data-server): Apply them.
2021-03-11 01:19:40 +01:00
Tobias Geerinckx-Rice 24f0bb21ab
gnu: qca: Update to 2.3.2.
* gnu/packages/kde.scm (qca): Update to 2.3.2.
2021-03-11 00:46:02 +01:00
Tobias Geerinckx-Rice 4c144b27d8
gnu: sooperlooper: Update to 1.7.6.
* gnu/packages/music.scm (sooperlooper): Update to 1.7.6.
2021-03-11 00:46:02 +01:00
Tobias Geerinckx-Rice f4618b13d8
gnu: bindfs: Update to 1.15.1.
* gnu/packages/file-systems.scm (bindfs): Update to 1.15.1.
2021-03-11 00:46:02 +01:00
Tobias Geerinckx-Rice 5929668ee8
gnu: weechat: Update to 3.1.
* gnu/packages/irc.scm (weechat): Update to 3.1.
2021-03-11 00:46:01 +01:00
Tobias Geerinckx-Rice 6900105334
gnu: os-prober: Update to 1.78.
* gnu/packages/bootloaders.scm (os-prober): Update to 1.78.
2021-03-11 00:46:01 +01:00
Tobias Geerinckx-Rice a3926c8227
gnu: mutt: Update to 2.0.6.
* gnu/packages/mail.scm (mutt): Update to 2.0.6.
2021-03-11 00:46:01 +01:00
Léo Le Bouter 6eea92e38b
gnu: librecad: Update to 2.2.0-rc2 [fixes CVE-2018-19105].
* gnu/packages/engineering.scm (librecad): Update to 2.2.0-rc2.
2021-03-10 23:58:02 +01:00
Nicolas Goaziou a70216c327
gnu: monolith: Update to 2.4.1.
* gnu/packages/web.scm (monolith): Update to 2.4.1.
2021-03-10 23:49:59 +01:00
Nicolas Goaziou b1e4be8fea
gnu: Add rust-cssparser-0.28.
* gnu/packages/crates-io.scm (rust-cssparser-0.28): New variable.
(rust-cssparser-0.27): Inherit from above.
2021-03-10 23:49:59 +01:00
Nicolas Goaziou 59e0c9a439
gnu: Add rust-reqwest-0.11.
* gnu/packages/crates-io.scm (rust-reqwest-0.11): New variable.
(rust-reqwest-0.10): Inherit from above.
2021-03-10 23:49:58 +01:00
Nicolas Goaziou 0f0451c6cb
gnu: Add rust-tokio-util-0.4.
* gnu/packages/crates-io.scm (rust-tokio-util-0.4): New variable.
2021-03-10 23:49:58 +01:00
Nicolas Goaziou 0d171198a2
gnu: rust-async-compression-0.3: Update to 0.3.7.
* gnu/packages/crates-io.scm (rust-async-compression-0.3): Update to 0.3.7.
[arguments]: Skip tests.
2021-03-10 23:49:58 +01:00
Nicolas Goaziou c2e5118452
gnu: Add rust-zstd-0.6.
* gnu/packages/crates-io.scm (rust-zstd-0.6): New variable.
(rust-zstd-0.5): Inherit from above.
2021-03-10 23:49:57 +01:00
Nicolas Goaziou 7c0565dcb5
gnu: Add rust-zstd-safe-3.
* gnu/packages/crates-io.scm (rust-zstd-safe-3): New variable.
(rust-zstd-safe-2): Inherit from above.
2021-03-10 23:49:57 +01:00
Nicolas Goaziou 1fa3b73618
gnu: rust-zstd-sys-1: Update to 1.4.20+zstd.1.4.9.
* gnu/packages/crates-io.scm (rust-zstd-sys-1): Update to 1.4.20+zstd.1.4.9.
2021-03-10 23:49:57 +01:00
Nicolas Goaziou 8a6c39e848
gnu: Add rust-bindgen-0.57.
* gnu/packages/crates-io.scm (rust-bindgen-0.57): New variable.
(rust-bindgen-0.55): Inherit from above.
2021-03-10 23:49:56 +01:00
Nicolas Goaziou 95b13ec637
gnu: Add rust-hyper-0.14.
* gnu/packages/crates-io.scm (rust-hyper-0.14): New variable.
(rust-hyper-0.13): Inherit from above.
2021-03-10 23:49:56 +01:00
Nicolas Goaziou b31d9a2fe6
gnu: Add rust-http-body-0.4.
* gnu/packages/crates-io.scm (rust-http-body-0.4): New variable.
(rust-http-body-0.3): Inherit from above.
2021-03-10 23:49:56 +01:00
Nicolas Goaziou 0846ddb129
gnu: Add rust-h2-0.3.
* gnu/packages/crates-io.scm (rust-h2-0.3): New variable.
(rust-h2-0.2): Inherit from above.
2021-03-10 23:49:55 +01:00
Nicolas Goaziou 50f7108957
gnu: Add rust-tokio-util-0.6.
* gnu/packages/crates-io.scm (rust-tokio-util-0.6): New variable.
(rust-tokio-util-0.3): Inherit from above.
2021-03-10 23:49:55 +01:00
Nicolas Goaziou 92075bd48d
gnu: Add rust-httpdate-0.3.
* gnu/packages/crates-io.scm (rust-httpdate-0.3): New variable.
2021-03-10 23:49:55 +01:00
Nicolas Goaziou ec64626f15
gnu: Add rust-hyper-rustls-0.22.
* gnu/packages/crates-io.scm (rust-hyper-rustls-0.22): New variable.
(rust-hyper-rustls-0.21): Inherit from above.
2021-03-10 23:49:54 +01:00
Nicolas Goaziou 4f2202bf30
gnu: Add rust-ct-logs-0.8.
* gnu/packages/crates-io.scm (rust-ct-logs-0.8): New variable.
(rust-ct-logs-0.7): Inherit from above.
2021-03-10 23:49:54 +01:00
Nicolas Goaziou d08a4c776f
gnu: Add rust-rustls-native-certs-0.5.
* gnu/packages/crates-io.scm (rust-rustls-native-certs-0.5): New variable.
(rust-rustls-native-certs-0.4): Inherit from above.
2021-03-10 23:49:54 +01:00
Nicolas Goaziou aab798976a
gnu: Add rust-webpki-roots-0.21.
* gnu/packages/crates-io.scm (rust-webpki-roots-0.21): New variable.
(rust-webpki-roots-0.20): Inherit from above.
2021-03-10 23:49:53 +01:00
Nicolas Goaziou d5249b0240
gnu: Add rust-hyper-tls-0.5.
* gnu/packages/crates-io.scm (rust-hyper-tls-0.5): New variable.
(rust-hyper-tls-0.4): Inherit from above.
2021-03-10 23:49:53 +01:00
Nicolas Goaziou 7945e1611f
gnu: Add rust-tokio-native-tls-0.3.
* gnu/packages/crates-io.scm (rust-tokio-native-tls-0.3): New variable.
(rust-tokio-native-tls-0.1): Inherit from above.
2021-03-10 23:49:53 +01:00
Nicolas Goaziou f8e2758ec4
gnu: Add rust-tokio-socks-0.5.
* gnu/packages/crates-io.scm (rust-tokio-socks-0.5): New variable.
(rust-tokio-socks-0.3): Inherit from above.
2021-03-10 23:49:52 +01:00
Nicolas Goaziou aa0038b640
gnu: rust-native-tls-0.2: Update to 0.2.7.
* gnu/packages/crates-io.scm (rust-native-tls-0.2): Update to 0.2.7.
2021-03-10 23:49:52 +01:00
Nicolas Goaziou 74efdfc4e9
gnu: Add rust-test-cert-gen-0.1.
* gnu/packages/crates-io.scm (rust-test-cert-gen-0.1): New variable.
2021-03-10 23:49:52 +01:00
Nicolas Goaziou 0d279640ce
gnu: Add rust-trust-dns-resolver-0.20.
* gnu/packages/crates-io.scm (rust-trust-dns-resolver-0.20): New variable.
(rust-trust-dns-resolver-0.19): Inherit from above.
2021-03-10 23:49:51 +01:00
Nicolas Goaziou 785cbb0989
gnu: Add rust-resolv-conf-0.7.
* gnu/packages/crates-io.scm (rust-resolv-conf-0.7): New variable.
(rust-resolv-conf-0.6): Inherit from above.
2021-03-10 23:49:51 +01:00
Nicolas Goaziou 3843fc8fc8
gnu: Add rust-tokio-openssl-0.6.
* gnu/packages/crates-io.scm (rust-tokio-openssl-0.6): New variable.
(rust-tokio-openssl-0.4): Inherit from above.
2021-03-10 23:49:51 +01:00
Nicolas Goaziou 43212fcaf6
gnu: Add rust-trust-dns-https-0.20.
* gnu/packages/crates-io.scm (rust-trust-dns-https-0.20): New variable.
(rust-trust-dns-https-0.19): Inherit from above.
2021-03-10 23:49:50 +01:00
Nicolas Goaziou 46f8eecb51
gnu: Add rust-trust-dns-rustls-0.20.
* gnu/packages/crates-io.scm (rust-trust-dns-rustls-0.20): New variable.
(rust-trust-dns-rustls-0.19): Inherit from above.
2021-03-10 23:49:50 +01:00
Nicolas Goaziou 58e89cb0b9
gnu: Add rust-trust-dns-openssl-0.20.
* gnu/packages/crates-io.scm (rust-trust-dns-openssl-0.20): New variable.
(rust-trust-dns-openssl-0.19): Inherit from above.
2021-03-10 23:49:50 +01:00
Nicolas Goaziou ba777a3cc4
gnu: Add rust-trust-dns-native-tls-0.20.
* gnu/packages/crates-io.scm (rust-trust-dns-native-tls-0.20): New variable.
(rust-trust-dns-native-tls-0.19): Inherit from above.
2021-03-10 23:49:49 +01:00
Nicolas Goaziou 3e6a0f1985
gnu: Add rust-trust-dns-proto-0.20.
* gnu/packages/crates-io.scm (rust-trust-dns-proto-0.20): New variable.
(rust-trust-dns-proto-0.19): Inherit from above.
2021-03-10 23:49:49 +01:00
Nicolas Goaziou 31be44a8aa
gnu: rust-openssl-sys-0.9: Update to 0.9.60.
* gnu/packages/crates-io.scm (rust-openssl-sys-0.9): Update to 0.9.60.
2021-03-10 23:49:49 +01:00
Nicolas Goaziou b950ff3dbf
gnu: rust-backtrace-0.3: Update to 0.3.56.
* gnu/packages/crates-io.scm (rust-backtrace-0.3): Update to 0.3.56.
2021-03-10 23:49:48 +01:00
Nicolas Goaziou fbc807f3b6
gnu: Add rust-addr2line-0.14.
* gnu/packages/crates-io.scm (rust-addr2line-0.14): New variable.
(rust-addr2line-0.11): Inherit from above.
2021-03-10 23:49:48 +01:00
Nicolas Goaziou 406fe167e1
gnu: Add rust-cpp-demangle-0.3.
* gnu/packages/crates-io.scm (rust-cpp-demangle-0.3): New variable.
(rust-cpp-demangle-0.2): Inherit from above.
2021-03-10 23:49:48 +01:00
Nicolas Goaziou 8e54e5243b
gnu: Add rust-gimli-0.23.
* gnu/packages/crates-io.scm (rust-gimli-0.23): New variable.
(rust-gimli-0.20): Inherit from above.
2021-03-10 23:49:47 +01:00
Nicolas Goaziou 8cc3a16cbb
gnu: Add rust-object-0.22.
* gnu/packages/crates-io.scm (rust-object-0.22): New variable.
2021-03-10 23:49:47 +01:00
Nicolas Goaziou b6a627e9c0
gnu: Add rust-object-0.23.
* gnu/packages/crates-io.scm (rust-object-0.23): New variable.
(rust-object-0.17): Inherit from above.
2021-03-10 23:49:47 +01:00
Nicolas Goaziou 6cadf34d1f
gnu: Add rust-wasmparser-0.57.
* gnu/packages/crates-io.scm (rust-wasmparser-0.57): New variable.
2021-03-10 23:49:46 +01:00
Léo Le Bouter 00c1793ce8
gnu: ungoogled-chromium: Add xdg-utils to PATH with wrapper.
This will ensure that 'mailto:' links work out of the box, among others.

* gnu/packages/chromium.scm (ungoogled-chromium): Modify replacement 'install
phase to add xdg-utils to PATH with wrap-program.
2021-03-10 23:38:53 +01:00
Léo Le Bouter 9b52ae19b1
gnu: containerd: Update to 1.3.10 [security fixes].
* gnu/packages/docker.scm (containerd): Update to 1.3.10.
2021-03-10 23:37:52 +01:00
Léo Le Bouter 83cda00bc6
gnu: docker: Update to 19.03.15 [security fixes].
* gnu/packages/docker.scm (%docker-version): Bump to 19.03.15.
(docker-libnetwork): Bump to 19.03-1.55e924b.
(docker):
[source]: Set git-reference url to 'https://github.com/moby/moby'.
[arguments]<#:phases>: Modify 'delete-failing-tests phase to delete
'signal_linux_test.go'.
2021-03-10 23:37:52 +01:00
Ludovic Courtès b665dd4a99
file-systems: 'mount-file-system' preserves the right mount flags.
Fixes <https://bugs.gnu.org/47007>.
Reported by Jelle Licht <jlicht@fsfe.org>.

Since commit dcb640f02b, we could end up
applying the wrong mount flags because the (find ...) expression could
pick the "wrong" mount point in the presence of bind mounts.

* gnu/build/file-systems.scm (mount-file-system): Use 'statfs' to
compute FLAGS whe FS is a bind mount.
2021-03-10 23:21:33 +01:00
Léo Le Bouter b610e4b9a7
gnu: lib3mf: Update to 2.1.1 [security fixes].
Non-exhaustively, fixes CVE-2021-21772.

* gnu/packages/engineering.scm (lib3mf): Update to 2.1.1.
[arguments]<#:phases>: Remove.
[arguments]<#:configure-flags>: Do not use zlib, libzip, gtest and libressl
vendored sources.
[native-inputs]: Remove googletest-source, add googletest and pkg-config.
[inputs]: Add libzip, libressl and zlib.
2021-03-10 22:22:04 +01:00
Léo Le Bouter 6c5d358cc2
gnu: python-django-2.2: Update to 2.2.19 [security fixes].
* gnu/packages/django.scm (python-django-2.2): Update to 2.2.19.
2021-03-10 21:50:06 +01:00
Léo Le Bouter 1997ded2f4
gnu: python-django: Update to 3.1.7 [security fixes].
* gnu/packages/django.scm (python-django): Update to 3.1.7.
2021-03-10 21:50:05 +01:00
Taylan Kammer b1eb744837
gnu: guile-bytestructures: Update to 1.0.10.
* gnu/packages/guile.scm (guile-bytestructures): Update to 1.0.10.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
See: <https://logs.guix.gnu.org/guix/2021-03-10.log#205043>
2021-03-10 21:22:42 +01:00
Mathieu Othacehe 60174c9c8c
gnu: cuirass: Update to 0.0.1-77.88f3cf6.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-77.88f3cf6.
2021-03-10 19:26:24 +01:00
Pierre Neidhardt 6e70211b20
gnu: sbcl-quri: Update to 0.3.0.
* gnu/packages/lisp-xyz.scm (sbcl-quri): Update to 0.3.0.
2021-03-10 18:20:05 +01:00
Pierre Neidhardt 336088d521
gnu: Add fof.
* gnu/packages/lisp-xyz.scm (cl-fof, ecl-fof, sbcl-fof): New variables.
2021-03-10 18:20:05 +01:00
Pierre Neidhardt c3e53066bd
gnu: sbcl-hu.dwim.defclass-star: Update to 20210309.
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.defclass-star): Update to 20210309.
2021-03-10 18:20:05 +01:00
Katherine Cox-Buday 02e2e093e8
import: Add Go importer.
This patch adds a 'guix import go' command.

* doc/guix.texi (Requirements): Mention Guile-Lib dependency.
(Invoking guix import): Document 'guix import go'.
* gnu/packages/package-management.scm (guix)[inputs, propagated-inputs]:
Add GUILE-LIB.
* guix/self.scm (compiled-guix)[guile-lib]: New variable.
[dependencies]: Add it.
(specification->package): Add "guile-lib".
* guix/build-system/go.scm (go-version->git-ref): New procedure.
* guix/import/go.scm, guix/scripts/import/go.scm, tests/go.scm: New files.
* guix/scripts/import.scm: Declare subcommand guix import go
* po/guix/POTFILES.in: Add 'guix/scripts/import/go.scm'.
* Makefile.am (MODULES): Add 'guix/import/go.scm' and
'guix/scripts/import/go.scm'.
(SCM_TESTS): Add 'tests/go.scm'.

Co-Authored-By: Helio Machado <0x2b3bfa0@gmail.com>
Co-Authored-By: Francois Joulaud <francois.joulaud@radiofrance.com>
Co-Authored-By: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Co-Authored-by: Ludovic Courtès <ludo@gnu.org>
2021-03-10 18:01:48 +01:00
Maxime Devos 520bac7ed0
services: Prevent following symlinks during activation.
This addresses a potential security issue, where a compromised
service could trick the activation code in changing the permissions,
owner and group of arbitrary files.  However, this patch is
currently only a partial fix, due to a TOCTTOU (time-of-check to
time-of-use) race, which can be fixed once guile has bindings
to openat and friends.

Fixes: <https://lists.gnu.org/archive/html/guix-devel/2021-01/msg00388.html>

* gnu/build/activation.scm: new procedure 'mkdir-p/perms'.
* gnu/services/authentication.scm
  (%nslcd-activation, nslcd-service-type): use new procedure.
* gnu/services/cups.scm (%cups-activation): likewise.
* gnu/services/dbus.scm (dbus-activation): likewise.
* gnu/services/dns.scm (knot-activation): likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-10 18:01:47 +01:00
Ludovic Courtès 1a1d0fe505
gnu: hwloc: Update to 2.4.1.
* gnu/packages/mpi.scm (hwloc-2): Update to 2.4.1.  Adjust URL.
2021-03-10 18:01:47 +01:00
Mathieu Othacehe c1baf9b824
gnu: cuirass: Update to 0.0.1-76.5f830da.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-76.5f830da.
2021-03-10 16:41:42 +01:00
Nicolas Goaziou efed8e6cb9
gnu: python-pikepdf: Update to 2.8.0.post2.
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.8.0.post2.
2021-03-10 16:03:27 +01:00
Mathieu Othacehe c260aff63e
gnu: cuirass: Update to 0.0.1-75.94a7f87.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-75.94a7f87.
2021-03-10 16:01:36 +01:00
Mathieu Othacehe 6bed29b798
gnu: guix: Update to 1.2.0-15.f8953be.
* gnu/packages/package-management.scm (guix): Update to 1.2.0-15.f8953be.
2021-03-10 14:25:05 +01:00
Mathieu Othacehe f8953bea85
gnu: cuirass: Update to 0.0.1-74.c8051f3.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-74.c8051f3.
2021-03-10 13:59:44 +01:00
Léo Le Bouter e5f89570c1
gnu: mongodb: Update to 3.4.24 [security fixes].
* gnu/packages/patches/mongodb-support-unknown-linux-distributions.patch:
Remove patch.
* gnu/local.mk (dist_patch_DATA): Ditto.
* gnu/packages/databases.scm (mongodb): Update to 3.4.24.
[source]: Drop patch. Update third_party libs folder names.
2021-03-10 13:03:12 +01:00
Léo Le Bouter fdf82830d4
gnu: mysql: Update to 5.7.33 [security fixes].
* gnu/packages/databases.scm (mysql): Update to 5.7.33.
2021-03-10 12:22:55 +01:00
Lars-Dominik Braun 999a1cba54
gnu: python-sanic: Update to 20.12.2.
* gnu/packages/python-web.scm (python-sanic) [version]: Update to 20.12.2.
[arguments]: Relax dependency versions.
[native-inputs]: Add python-pytest-asyncio.
[home-page]: Update.
[synopsis]: Remove Python version.
[description]: Ditto.
2021-03-10 12:01:50 +01:00
Lars-Dominik Braun 955fcf0a19
gnu: python-pytest-sanic: Update to 1.7.0.
* gnu/packages/python-check.scm (python-pytest-sanic) [version]: Update to
1.7.0.
[propagated-inputs]: Replace python-aiohttp with python-httpx and add
python-websockets.
2021-03-10 12:01:49 +01:00
Lars-Dominik Braun 548d0ddd7f
gnu: python-aiofiles: Update to 0.6.0.
* gnu/packages/python-xyz.scm (python-aiofiles): Update to 0.6.0.
2021-03-10 12:01:48 +01:00
Lars-Dominik Braun d58a7b45cd
gnu: python-ujson: Update to 4.0.2.
* gnu/packages/python-xyz.scm (python-ujson): Update to 4.0.2.
2021-03-10 12:01:47 +01:00
Lars-Dominik Braun e7a3ae1e85
gnu: python-tortoise-orm: Update to 0.16.21.
* gnu/packages/databases.scm (python-tortoise-orm) [version]: Update to 0.16.21.
[arguments]: Relax version requirements.
2021-03-10 12:01:46 +01:00
Lars-Dominik Braun 281fd9ad71
gnu: python-aiosqlite: Update to 0.17.0.
* gnu/packages/databases.scm (python-aiosqlite) [version]: Update to 0.17.0.
[arguments]: Run tests.
[propagated-inputs]: Add python-typing-extensions.
2021-03-10 12:01:45 +01:00
Lars-Dominik Braun f73ee73da7
gnu: python-pypika: Update to 0.47.6.
* gnu/packages/databases.scm (python-pypika): Update to 0.47.6.
2021-03-10 12:01:43 +01:00
Lars-Dominik Braun b431840cbe
gnu: python-aiounittest: Update to 1.4.0.
* gnu/packages/check.scm (python-aiounittest) [version]: Update to 1.4.0.
[source]: Switch to git repository.
[arguments]: Run notetests.
[propagated-inputs]: Add python-wrapt.
2021-03-10 12:01:42 +01:00
Lars-Dominik Braun 38b0c64d7b
gnu: python-shouldbe: Remove.
Unmaintained upstream and its only dependent (python-gssapi) dropped it.

* gnu/packages/patches/python-shouldbe-0.1.2-cpy3.8.patch: Remove.
* gnu/local.mk: Drop patch file.
* gnu/packages/python-xyz.scm (python-shouldbe): Remove.
2021-03-10 12:01:41 +01:00
Lars-Dominik Braun 714465ec7c
gnu: python-asyncssh: Update to 2.5.0.
* gnu/packages/ssh.scm (python-asyncssh): Update to 2.5.0.
2021-03-10 12:01:40 +01:00
Lars-Dominik Braun 9a05af61ac
gnu: python-gssapi: Update to 1.6.12.
* gnu/packages/python-xyz.scm (python-gssapi) [version]: Update to 1.6.12.
[arguments]: Tests have been fixed upstream, remove.
[native-inputs]: python-shouldbea is not required any more, remove.
2021-03-10 12:01:35 +01:00
Léo Le Bouter 70128b8afa
gnu: cyrus-sasl: Fix CVE-2019-19906.
* gnu/packages/patches/cyrus-sasl-CVE-2019-19906.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/cyrus-sasl.scm (cyrus-sasl/fixed): New variable. Apply patch.
(cyrus-sasl)[replacement]: Graft.
2021-03-10 11:51:09 +01:00
Raghav Gururajan fb4ccb86c2
gnu: gajim: Update to 1.3.1.
* gnu/packages/messaging.scm (gajim): Update to 1.3.1.
[arguments]: Modify custom 'disable-failing-tests phase.
2021-03-10 12:22:42 +02:00
Simon South e6cd049e2f
gnu: sdcc: Update to 4.1.0.
* gnu/packages/embedded.scm (sdcc): Update to 4.1.0.
* gnu/packages/patches/sdcc-disable-non-free-code.patch: Update to match new
version.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-10 12:22:42 +02:00
Léo Le Bouter 47ce29666b
gnu: botan: Update to 2.17.3 [fixes CVE-2021-24115].
* gnu/packages/crypto.scm (botan): Update to 2.17.3.
[arguments]: Add 'library-path-for-tests phase to fix 'check phase by setting
LD_LIBRARY_PATH to intermediate build directory so tests can find libbotan.
2021-03-10 11:20:08 +01:00
Léo Le Bouter f7fdafeff5
gnu: zziplib: Update to 0.13.72 [security fixes].
Non-exhaustively, fixes CVE-2018-16548 and CVE-2018-17828.

* gnu/packages/compression.scm (zziplib/fixed): New variable.
(zziplib)[replacement]: Graft.
2021-03-10 10:59:12 +01:00
Guillaume Le Vaillant b8e71b390d
gnu: Add unixcw.
* gnu/packages/radio.scm (unixcw): New variable.
2021-03-10 10:54:56 +01:00
Guillaume Le Vaillant e212f32dce
gnu: Add aldo.
* gnu/packages/radio.scm (aldo): New variable.
2021-03-10 10:54:56 +01:00
Raghav Gururajan f4fd7bda51
gnu: python-nbxmpp: Update to 2.0.2.
* gnu/packages/messaging.scm (python-nbxmpp) [version]: Update to 2.0.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-10 11:03:46 +02:00
Léo Le Bouter b66fc0a64b
gnu: bsdiff: Fix CVE-2014-9862.
* gnu/packages/patches/bsdiff-CVE-2014-9862.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/compression.scm (bsdiff): Apply it.
2021-03-10 09:54:27 +01:00
Mathieu Othacehe 207ef1a2b4
tests: cuirass: Remove cuirass simple test.
This is a follow-up of 6c883d0f1d.

* gnu/tests/cuirass.scm (simple-cuirass-service, %cuirass-simple-test): Remove
them.
2021-03-10 09:37:48 +01:00
Mathieu Othacehe 6c883d0f1d
services: cuirass: Remove simple cuirass configuration.
The Cuirass configuration has been simplified so that this is no longer
needed.

* gnu/services/cuirass.scm (<build-manifest>, <simple-cuirass-configuration>,
simple-cuirass-configuration->specs): Remove them.
2021-03-10 09:05:02 +01:00
Mathieu Othacehe 76bea3f8bc
ci: Remove hydra support.
This removes hydra support to use Cuirass as the only continuous integration
system.

* build-aux/hydra/gnu-system.scm: Remove it.
* build-aux/hydra/guix-modular.scm: Ditto.
* build-aux/hydra/guix.scm: Ditto.
* build-aux/cuirass/hydra-to-cuirass.scm: Ditto.
* Makefile.am (EXTRA_DIST): Update it.
(hydra-jobs.scm): Remove it.
(cuirass-jobs.scm): Update it.
* build-aux/hydra/evaluate.scm: Move it to ...
* build-aux/cuirass/evaluate.scm: ... here.
* build-aux/cuirass/guix-modular.scm: Remove it.
* build-aux/cuirass/gnu-system.scm: Ditto.
* guix/packages.scm (%hydra-supported-systems): Rename it to ...
(%cuirass-supported-systems): ... this variable.
* build-aux/check-final-inputs-self-contained: Adapt it.
* etc/release-manifest.scm: Ditto.
* gnu/ci.scm (package->alist): Remove it.
(derivation->job): New procedure.
(package-job, package-cross-job, cross-jobs, image-jobs, system-test-jobs,
tarball-jobs): Use it.
(guix-jobs): New procedure.
(hydra-jobs): Rename it to ...
(cuirass-jobs): ... this procedure.
2021-03-10 08:49:48 +01:00
Mathieu Othacehe 0be2474d42
services: cuirass: Do not create the database directory.
Fixes: <https://issues.guix.gnu.org/46683>.

* gnu/services/cuirass.scm (cuirass-activation): Since the PostgreSQL switch,
it is no longer needed to create the database directory.
2021-03-10 08:49:48 +01:00
Mathieu Othacehe ff52d1156c
gnu: cuirass: Update to 0.0.1-73.14e1335.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-73.14e1335.
[arguments]: Enable tests and add new 'set-PATH-for-tests phase.
[native-inputs]: Add ephemeralpg.
2021-03-10 08:49:47 +01:00
Mathieu Othacehe 0d5e2c587f
gnu: guile-simple-zmq: Update to 0.0.0-9.b2ea97e.
* gnu/packages/guile-xyz.scm (guile-simple-zmq): Update to 0.0.0-9.b2ea97e.
2021-03-10 08:49:47 +01:00
Léo Le Bouter 80739ea480
gnu: gnucobol: Update to 3.1.2 [security fixes].
* gnu/packages/cobol.scm (gnucobol): Update to 3.1.2.
[arguments]: Add 'set-TERM phase before 'check to set the TERM environment
variable for tests that expect it.
2021-03-10 06:54:58 +01:00
Léo Le Bouter ca15eaeb06
gnu: osc: Update to 0.172.0 [fixes CVE-2019-3681].
* gnu/packages/build-tools.scm (osc): Update to 0.172.0.
[native-inputs]: Add python-chardet. Required by tests.
2021-03-10 05:01:38 +01:00
Léo Le Bouter f736dedc4f
gnu: python-m2crypto: Disable tests because they are date-sensitive.
* gnu/packages/python-crypto.scm (python-m2crypto)[arguments]: Set '#:tests?'
to '#f'.
2021-03-10 05:01:38 +01:00
Leo Famulari 014ef060ea
gnu: linux-libre 5.4: Update to 5.4.104.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.104.
(linux-libre-5.4-pristine-source): Update hash.
2021-03-09 22:10:23 -05:00
Leo Famulari 79aafab07d
gnu: linux-libre 5.10: Update to 5.10.22.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.22.
(linux-libre-5.10-pristine-source): Update hash.
2021-03-09 22:10:23 -05:00
Leo Famulari b38f73f35c
gnu: linux-libre: Update to 5.11.5.
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.5.
(linux-libre-5.11-pristine-source): Update hash.
2021-03-09 22:10:16 -05:00
Léo Le Bouter 674474f646
gnu: c-ares: Update to 1.17.1 [fixes CVE-2020-8277].
* gnu/packages/adns.scm (c-ares/fixed): New variable.
(c-ares)[replacement]: Graft.
2021-03-10 03:52:04 +01:00
Léo Le Bouter 852ba914a4
gnu: imagemagick/fixed: Retain version length for successful grafting.
* gnu/packages/imagemagick.scm (imagemagick/fixed):
[version]: Append 'g'.
[source]: Hardcode version.
2021-03-10 01:36:26 +01:00
Sébastien Lerique 81404a858c
gnu: password-store: Update to 1.7.3-1.918992c.
* gnu/packages/password-utils.scm (password-store): Update to
1.7.3-1.918992c.
[arguments]<#:phases>['wrap-path]: Add "wl-clipboard".
[inputs]: Add "wl-clipboard".

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-03-10 01:16:08 +01:00
Tobias Geerinckx-Rice 5d0f394b85
gnu: dcmtk: Update to 3.6.6.
* gnu/packages/image-processing.scm (dcmtk): Update to 3.6.6.
[inputs]: Add icu4c.
2021-03-10 01:16:07 +01:00
Tobias Geerinckx-Rice 4aef8e0af5
gnu: electron-cash: Update to 4.2.4.
* gnu/packages/finance.scm (electron-cash): Update to 4.2.4.
2021-03-10 01:16:07 +01:00
Tobias Geerinckx-Rice d5542627fa
gnu: range-v3: Fix typo in description.
* gnu/packages/cpp.scm (range-v3)[description]: Fix typo.
2021-03-10 01:16:07 +01:00
Tobias Geerinckx-Rice 42364648ba
gnu: fcitx5: Update to 5.0.5.
* gnu/packages/fcitx5.scm (fcitx5): Update to 5.0.5.
2021-03-10 01:16:07 +01:00
Tobias Geerinckx-Rice 5f299b4a31
gnu: lmdb: Update to 0.9.28.
* gnu/packages/databases.scm (lmdb): Update to 0.9.28.
2021-03-10 01:16:07 +01:00
Léo Le Bouter cbb5b5c4d5
gnu: git: Update to 2.30.2 [fixes CVE-2021-21300].
* gnu/packages/version-control.scm (git): Update to 2.30.2.
2021-03-10 01:09:26 +01:00
Léo Le Bouter 6320700b11
gnu: libtiff: Update to 4.2.0 [security fixes].
Non-exhaustively, fixes CVE-2020-35523, CVE-2020-35522 and CVE-2020-35521.

* gnu/packages/image.scm (libtiff/fixed): New variable.
(libtiff)[replacement]: Graft.
2021-03-10 00:52:47 +01:00
Raghav Gururajan 82a2f182c5
gnu: Add nextcloud-client.
* gnu/packages/messaging.scm (nextcloud-client): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-03-10 00:19:49 +01:00
Raghav Gururajan 92a432c1f8
gnu: Add qtsolutions.
* gnu/packages/qt.scm (qtsolutions): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-03-10 00:19:49 +01:00
Raghav Gururajan afd83de087
gnu: Add appstream.
* gnu/packages/freedesktop.scm (appstream): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-03-10 00:19:48 +01:00
Léo Le Bouter 82e887ba48
gnu: imagemagick: Update to 6.9.12-2 [security fixes].
* gnu/packages/imagemagick.scm (imagemagick/fixed): New variable.
(imagemagick)[replacement]: Graft.
2021-03-09 23:02:51 +01:00
Ricardo Wurmus 6a38d580c7
gnu: r-lubridate: Update to 1.7.10.
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.10.
2021-03-09 22:05:32 +01:00
Ricardo Wurmus 382f539b5e
gnu: r-pbkrtest: Update to 0.5.1.
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.5.1.
2021-03-09 22:05:32 +01:00
Ricardo Wurmus 15add0c264
gnu: r-quantreg: Update to 5.85.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.85.
2021-03-09 22:05:32 +01:00
Ricardo Wurmus 27b17f5e6c
gnu: r-matrixmodels: Update to 0.5-0.
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-0.
2021-03-09 22:05:32 +01:00
Ricardo Wurmus 12580eb435
gnu: r-beeswarm: Update to 0.3.1.
* gnu/packages/statistics.scm (r-beeswarm): Update to 0.3.1.
2021-03-09 22:05:32 +01:00
Ricardo Wurmus 83f98e6317
gnu: r-hmisc: Update to 4.5-0.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.5-0.
2021-03-09 22:05:32 +01:00
Ricardo Wurmus eddff93fd3
gnu: r-tidyr: Update to 1.1.3.
* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.3.
2021-03-09 22:05:32 +01:00
Ricardo Wurmus 4f9f7e7eb2
gnu: r-glmnet: Update to 4.1-1.
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-1.
2021-03-09 22:05:32 +01:00
Ricardo Wurmus 7901124b5b
gnu: r-sparsem: Update to 1.81.
* gnu/packages/statistics.scm (r-sparsem): Update to 1.81.
2021-03-09 22:05:32 +01:00
Ricardo Wurmus 84e98bbc4f
gnu: r-segmented: Update to 1.3-3.
* gnu/packages/statistics.scm (r-segmented): Update to 1.3-3.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus 395ab04137
gnu: r-rmarkdown: Update to 2.7.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.7.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus 658e44abdb
gnu: r-desc: Update to 1.3.0.
* gnu/packages/statistics.scm (r-desc): Update to 1.3.0.
[propagated-inputs]: Remove r-assertthat.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus 2dcc88a153
gnu: r-data-table: Update to 1.14.0.
* gnu/packages/statistics.scm (r-data-table): Update to 1.14.0.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus 47b8a239dc
gnu: r-dplyr: Update to 1.0.5.
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.5.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus 9846034edc
gnu: r-tibble: Update to 3.1.0.
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.0.
[propagated-inputs]: Remove r-cli and r-crayon.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus 4a27e42fd6
gnu: r-testthat: Update to 3.0.2.
* gnu/packages/statistics.scm (r-testthat): Update to 3.0.2.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus 440dd95f72
gnu: r-mime: Update to 0.10.
* gnu/packages/statistics.scm (r-mime): Update to 0.10.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus 84bd32a964
gnu: r-svglite: Update to 2.0.0.
* gnu/packages/statistics.scm (r-svglite): Update to 2.0.0.
[inputs]: Add libpng and zlib.
[propagated-inputs]: Remove r-bh, r-gdtools, and r-rcpp; add r-cpp11 and
r-systemfonts.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus ba522c9fa3
gnu: r-mgcv: Update to 1.8-34.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-34.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus ea2197cbe8
gnu: r-cluster: Update to 2.1.1.
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.1.
2021-03-09 22:05:31 +01:00
Ricardo Wurmus 71939b503b
gnu: r-mass: Update to 7.3-53.1.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.1.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus 85b2d41eeb
gnu: r-boot: Update to 1.3-27.
* gnu/packages/statistics.scm (r-boot): Update to 1.3-27.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus 31c9810b7e
gnu: r-ragg: Update to 1.1.1.
* gnu/packages/cran.scm (r-ragg): Update to 1.1.1.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus 6c714c19f8
gnu: r-textshaping: Update to 0.3.1.
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.1.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus bf7ad534e4
gnu: r-mlr3tuning: Update to 0.7.0.
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.7.0.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus 9a9d470ae0
gnu: r-mlr3: Update to 0.11.0.
* gnu/packages/cran.scm (r-mlr3): Update to 0.11.0.
[propagated-inputs]: Add r-palmerpenguins and r-parallelly.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus ca718b9e34
gnu: r-paradox: Update to 0.7.1.
* gnu/packages/cran.scm (r-paradox): Update to 0.7.1.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus e08e5f9fe2
gnu: r-tune: Update to 0.1.3.
* gnu/packages/cran.scm (r-tune): Update to 0.1.3.
[propagated-inputs]: Remove r-hardhat.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus 2d89c723ab
gnu: r-dicedesign: Update to 1.9.
* gnu/packages/cran.scm (r-dicedesign): Update to 1.9.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus b5b344fb26
gnu: r-rsample: Update to 0.0.9.
* gnu/packages/cran.scm (r-rsample): Update to 0.0.9.
[propagated-inputs]: Remove r-modeldata.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus 8b1f08ba04
gnu: r-survminer: Update to 0.4.9.
* gnu/packages/cran.scm (r-survminer): Update to 0.4.9.
[propagated-inputs]: Add r-ggtext.
2021-03-09 22:05:30 +01:00
Ricardo Wurmus abdb1090a7
gnu: r-flexsurv: Update to 2.0.
* gnu/packages/cran.scm (r-flexsurv): Update to 2.0.
[propagated-inputs]: Add r-assertthat, r-dplyr, r-generics, r-magrittr,
r-matrix, r-numderiv, r-purrr, r-rlang, r-rstpm2, and r-tidyselect.
2021-03-09 22:05:29 +01:00
Ricardo Wurmus 2be47c7a9a
gnu: r-isoband: Update to 0.2.4.
* gnu/packages/cran.scm (r-isoband): Update to 0.2.4.
[propagated-inputs]: Remove r-testthat.
2021-03-09 22:05:29 +01:00
Ricardo Wurmus e59f4ecda8
gnu: r-erm: Update to 1.0-2.
* gnu/packages/cran.scm (r-erm): Update to 1.0-2.
2021-03-09 22:05:29 +01:00
Ricardo Wurmus b631f7f8e4
gnu: r-openmx: Update to 2.19.1.
* gnu/packages/cran.scm (r-openmx): Update to 2.19.1.
2021-03-09 22:05:29 +01:00
Ricardo Wurmus 60f8539526
gnu: r-isocodes: Update to 2021.02.24.
* gnu/packages/cran.scm (r-isocodes): Update to 2021.02.24.
2021-03-09 22:05:29 +01:00
Ricardo Wurmus 61967afbc5
gnu: r-imager: Update to 0.42.7.
* gnu/packages/cran.scm (r-imager): Update to 0.42.7.
2021-03-09 22:05:29 +01:00
Ricardo Wurmus 8bf21d4076
gnu: r-gamlss: Update to 5.3-1.
* gnu/packages/cran.scm (r-gamlss): Update to 5.3-1.
2021-03-09 22:05:29 +01:00
Ricardo Wurmus 894308dddb
gnu: r-lifecycle: Update to 1.0.0.
* gnu/packages/cran.scm (r-lifecycle): Update to 1.0.0.
2021-03-09 22:05:29 +01:00
Ricardo Wurmus a9797ab658
gnu: r-parameters: Update to 0.12.0.
* gnu/packages/cran.scm (r-parameters): Update to 0.12.0.
2021-03-09 22:05:29 +01:00
Ricardo Wurmus ce5c9704b3
gnu: r-kableextra: Update to 1.3.4.
* gnu/packages/cran.scm (r-kableextra): Update to 1.3.4.
[propagated-inputs]: Add r-svglite.
2021-03-09 22:05:29 +01:00
Ricardo Wurmus fa82677b27
gnu: r-dalex: Update to 2.1.1.
* gnu/packages/cran.scm (r-dalex): Update to 2.1.1.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 6802fe3cb7
gnu: r-xmlparsedata: Update to 1.0.5.
* gnu/packages/cran.scm (r-xmlparsedata): Update to 1.0.5.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 744190fe45
gnu: r-ggraph: Update to 2.0.5.
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.5.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus df20df3512
gnu: r-ggforce: Update to 0.3.3.
* gnu/packages/cran.scm (r-ggforce): Update to 0.3.3.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus a5cfb3f330
gnu: r-farver: Update to 2.1.0.
* gnu/packages/cran.scm (r-farver): Update to 2.1.0.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus b96724c423
gnu: r-arsenal: Update to 3.6.2.
* gnu/packages/cran.scm (r-arsenal): Update to 3.6.2.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus ab8c8693c1
gnu: r-genetics: Update to 1.3.8.1.3.
* gnu/packages/cran.scm (r-genetics): Update to 1.3.8.1.3.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 5a3996538c
gnu: r-deldir: Update to 0.2-10.
* gnu/packages/cran.scm (r-deldir): Update to 0.2-10.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 8c866232e1
gnu: r-units: Update to 0.7-0.
* gnu/packages/cran.scm (r-units): Update to 0.7-0.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus a9ab876114
gnu: r-gamlss-dist: Update to 5.3-2.
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.3-2.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 34471fa1b2
gnu: r-shinyjqui: Update to 0.4.0.
* gnu/packages/cran.scm (r-shinyjqui): Update to 0.4.0.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 089a3a7fcd
gnu: r-epi: Update to 2.44.
* gnu/packages/cran.scm (r-epi): Update to 2.44.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus 690940cc53
gnu: r-dotcall64: Update to 1.0-1.
* gnu/packages/cran.scm (r-dotcall64): Update to 1.0-1.
2021-03-09 22:05:28 +01:00
Ricardo Wurmus b63f13b59f
gnu: r-gargle: Update to 1.0.0.
* gnu/packages/cran.scm (r-gargle): Update to 1.0.0.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 1443bb0f19
gnu: r-tiff: Update to 0.1-7.
* gnu/packages/cran.scm (r-tiff): Update to 0.1-7.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus cf1ef75cc4
gnu: r-fftwtools: Update to 0.9-11.
* gnu/packages/cran.scm (r-fftwtools): Update to 0.9-11.
[native-inputs]: Add pkg-config.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 7fab62cecb
gnu: r-ouch: Update to 2.15-1.
* gnu/packages/cran.scm (r-ouch): Update to 2.15-1.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 1ef3abaff3
gnu: r-activity: Update to 1.3.1.
* gnu/packages/cran.scm (r-activity): Update to 1.3.1.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 1b9009ce98
gnu: r-rgl: Update to 0.105.22.
* gnu/packages/cran.scm (r-rgl): Update to 0.105.22.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus ed7f3e3c2f
gnu: r-rcppparallel: Update to 5.0.3.
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.3.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 7db329a300
gnu: r-mvabund: Update to 4.1.9.
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.9.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 70d490eb73
gnu: r-gert: Update to 1.2.0.
* gnu/packages/cran.scm (r-gert): Update to 1.2.0.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 4c113c54f1
gnu: r-labelled: Update to 2.8.0.
* gnu/packages/cran.scm (r-labelled): Update to 2.8.0.
[propagated-inputs]: Remove r-pillar; add r-stringr.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 2dae640d8a
gnu: r-doby: Update to 4.6.9.
* gnu/packages/cran.scm (r-doby): Update to 4.6.9.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus c1037edc89
gnu: r-deriv: Update to 4.1.3.
* gnu/packages/cran.scm (r-deriv): Update to 4.1.3.
2021-03-09 22:05:27 +01:00
Ricardo Wurmus 111400674f
gnu: r-insight: Update to 0.13.1.
* gnu/packages/cran.scm (r-insight): Update to 0.13.1.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus ad037d6ecb
gnu: r-officer: Update to 0.3.17.
* gnu/packages/cran.scm (r-officer): Update to 0.3.17.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 0281b306ca
gnu: r-rdpack: Update to 2.1.1.
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.1.
[propagated-inputs]: Remove r-gbrd.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus fdf375346a
gnu: r-rstatix: Update to 0.7.0.
* gnu/packages/cran.scm (r-rstatix): Update to 0.7.0.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus b6d9965d41
gnu: r-ggsignif: Update to 0.6.1.
* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.1.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 2c49fe4063
gnu: r-renv: Update to 0.13.0.
* gnu/packages/cran.scm (r-renv): Update to 0.13.0.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus b592c4dbe6
gnu: r-rastervis: Update to 0.50.
* gnu/packages/cran.scm (r-rastervis): Update to 0.50.
[propagated-inputs]: Add r-terra.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 9d9d11b5d3
gnu: r-promises: Update to 1.2.0.1.
* gnu/packages/cran.scm (r-promises): Update to 1.2.0.1.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 0505facdd5
gnu: r-rio: Update to 0.5.26.
* gnu/packages/cran.scm (r-rio): Update to 0.5.26.
[native-inputs]: Add r-knitr.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 1774703383
gnu: r-tinytex: Update to 0.30.
* gnu/packages/cran.scm (r-tinytex): Update to 0.30.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus bd1ff10ea0
gnu: r-pillar: Update to 1.5.1.
* gnu/packages/cran.scm (r-pillar): Update to 1.5.1.
[native-inputs]: Add r-knitr.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 6fe7e138b9
gnu: r-argparser: Update to 0.7.1.
* gnu/packages/cran.scm (r-argparser): Update to 0.7.1.
2021-03-09 22:05:26 +01:00
Ricardo Wurmus 5136cc1306
gnu: r-cli: Update to 2.3.1.
* gnu/packages/cran.scm (r-cli): Update to 2.3.1.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 0496ce3c44
gnu: r-broom: Update to 0.7.5.
* gnu/packages/cran.scm (r-broom): Update to 0.7.5.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 6c7d9efdd8
gnu: r-ipred: Update to 0.9-10.
* gnu/packages/cran.scm (r-ipred): Update to 0.9-10.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus b3700e61d4
gnu: r-energy: Update to 1.7-8.
* gnu/packages/cran.scm (r-energy): Update to 1.7-8.
[propagated-inputs]: Add r-gsl.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 37097b923c
gnu: r-rmpi: Update to 0.6-9.1.
* gnu/packages/cran.scm (r-rmpi): Update to 0.6-9.1.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 4fcbe65d61
gnu: r-proxy: Update to 0.4-25.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-25.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus adbd713085
gnu: r-ggally: Update to 2.1.1.
* gnu/packages/cran.scm (r-ggally): Update to 2.1.1.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 7ff93d3483
gnu: r-ffbase: Update to 0.13.3.
* gnu/packages/cran.scm (r-ffbase): Update to 0.13.3.
2021-03-09 22:05:25 +01:00
Ricardo Wurmus 84e39b3d99
gnu: r-pkgload: Update to 1.2.0.
* gnu/packages/cran.scm (r-pkgload): Update to 1.2.0.
2021-03-09 22:05:25 +01:00