6e835cd380
gnu: Add r-scenic.
...
* gnu/packages/bioinformatics.scm (r-scenic): New variable.
Change-Id: Iff1f501a406ba1a12e49093a575e03facc98f303
2024-01-23 13:36:47 +01:00
994817bfdc
gnu: python-scipy: Update to 1.12.0.
...
* gnu/packages/python-science.scm (python-scipy): Update to 1.12.0.
[propagated-inputs]: Add python-jupytext, python-mpmath, python-mypy,
python-numpydoc, python-pydata-sphinx-theme, python-pydevtool,
python-rich-click, python-sphinx, python-threadpoolctl, and
python-typing-extensions; remove python-pyparsing.
[native-inputs]: Add python-hypothesis, python-pycodestyle, python-pytest-cov,
and python-pytest-xdist; remove python-threadpoolctl.
Change-Id: I81a4831e3d94c58416f7d35ec47de90370b88210
2024-01-23 13:36:47 +01:00
2eb061be79
gnu: r-desctools: Update to 0.99.53.
...
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.53.
Change-Id: I425b37907b51a93fafa193d217bdf68636f608a7
2024-01-23 13:36:47 +01:00
24d6410125
gnu: r-plotly: Update to 4.10.4.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.10.4.
Change-Id: Idd10685b1ab521056e0468f0c0c188543c11c96a
2024-01-23 13:36:47 +01:00
863ba4b830
gnu: r-xml: Update to 3.99-0.16.1.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.16.1.
Change-Id: I2936eac03ec20b091e45b920f946d92028099973
2024-01-23 13:36:47 +01:00
b4a255c2fb
gnu: r-rsqlite: Update to 2.3.5.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.5.
Change-Id: I43e95bc4ff0b0dc36cf9f3de1705d63bc5681286
2024-01-23 13:36:47 +01:00
bf933e4f11
gnu: r-roxygen2: Update to 7.3.1.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.1.
Change-Id: I5d23ee576beb4dc4dc1e49d13cc38ffef0d33512
2024-01-23 13:36:47 +01:00
4fa0d97e99
gnu: r-maldiquant: Update to 1.22.2.
...
* gnu/packages/cran.scm (r-maldiquant): Update to 1.22.2.
Change-Id: Ia483cff36bb3a2cbf4b691bb4832ce98757aabe0
2024-01-23 13:36:47 +01:00
0a733805d8
gnu: r-modeldata: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-modeldata): Update to 1.3.0.
Change-Id: Ibaef5366948e9ca45325d279a99f14417ca43e8e
2024-01-23 13:36:47 +01:00
9eb92d55e0
gnu: r-yardstick: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-yardstick): Update to 1.3.0.
[propagated-inputs]: Add r-withr.
Change-Id: I00a5d74cca4396e685df32f85d998004a3e94edc
2024-01-23 13:36:47 +01:00
a9de282219
gnu: r-lightgbm: Update to 4.3.0.
...
* gnu/packages/cran.scm (r-lightgbm): Update to 4.3.0.
Change-Id: I9da6fbcf9558f1ed47b41abd7183f3c53ba1ec67
2024-01-23 13:36:47 +01:00
ad552bf927
gnu: r-rstanarm: Update to 2.32.1.
...
* gnu/packages/cran.scm (r-rstanarm): Update to 2.32.1.
Change-Id: Ib83276a66add397aeacd830803f94f713f0c22e3
2024-01-23 13:36:47 +01:00
fe495a9c64
gnu: r-matrixextra: Update to 0.1.15.
...
* gnu/packages/cran.scm (r-matrixextra): Update to 0.1.15.
Change-Id: I72c274e3075cc40d0f6aafb8199a4594c1a518c6
2024-01-23 13:36:47 +01:00
3995f40cd7
gnu: r-graphlayouts: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-graphlayouts): Update to 1.1.0.
Change-Id: I5056c2158af15aeed9d5b53a52149e67d6d50b56
2024-01-23 13:36:47 +01:00
306fa840ed
gnu: r-mcmcpack: Update to 1.7-0.
...
* gnu/packages/cran.scm (r-mcmcpack): Update to 1.7-0.
Change-Id: I2e480dee05c23158b9ab58de5f9a90e623a7f6b2
2024-01-23 13:36:47 +01:00
899ee468d3
gnu: r-ggfun: Update to 0.1.4.
...
* gnu/packages/cran.scm (r-ggfun): Update to 0.1.4.
Change-Id: I08cf695cd03bf28aaa2f2b7b4a35c6632a7027c4
2024-01-23 13:36:47 +01:00
495372ea1f
gnu: r-rmpfr: Update to 0.9-5.
...
* gnu/packages/cran.scm (r-rmpfr): Update to 0.9-5.
Change-Id: I32ba06d98406989aca7129f9f647e836e06663f8
2024-01-23 13:36:47 +01:00
da3bd82788
gnu: r-bigrquery: Update to 1.5.0.
...
* gnu/packages/cran.scm (r-bigrquery): Update to 1.5.0.
[propagated-inputs]: Remove r-assertthat, r-glue, r-progress, r-rcpp, and r-withr; add
r-clock and r-cpp11.
Change-Id: I3f1eb2e32ce901231303a2eb905e8fd7aa0f995a
2024-01-23 13:36:47 +01:00
ef3b092587
gnu: r-fmsb: Update to 0.7.6.
...
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.6.
Change-Id: I9acec8e49ba036f263223a37c53cf9d4a82ba59f
2024-01-23 13:36:47 +01:00
617c41f418
gnu: r-quickjsr: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-quickjsr): Update to 1.1.0.
Change-Id: Ic2fb19a11c781c25b63cc2ed1bf185201aca0fe8
2024-01-23 13:36:47 +01:00
e2284fa77d
gnu: r-cmplot: Update to 4.5.1.
...
* gnu/packages/cran.scm (r-cmplot): Update to 4.5.1.
Change-Id: I34faf9e7c4b786aaae660ba18c65b429304db601
2024-01-23 13:36:47 +01:00
e8a7227004
gnu: r-nodbi: Update to 0.10.0.
...
* gnu/packages/cran.scm (r-nodbi): Update to 0.10.0.
[propagated-inputs]: Add r-r-utils and r-v8.
Change-Id: I1cc2c0c99f15cde415c90fa8959f3e0ffc546458
2024-01-23 13:36:47 +01:00
4438bfd898
gnu: r-overlap: Update to 0.3.9.
...
* gnu/packages/cran.scm (r-overlap): Update to 0.3.9.
[propagated-inputs]: Add r-suntools.
Change-Id: I3dc9817e0c7a5b4c4422e285aa5ccf4320047bd6
2024-01-23 13:36:47 +01:00
4dda10ae21
gnu: r-import: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-import): Update to 1.3.2.
Change-Id: Ic78d705b104683e14f3b1848ba0218bfcc6e8ab1
2024-01-23 13:36:47 +01:00
f4eb36050e
gnu: r-xts: Update to 0.13.2.
...
* gnu/packages/cran.scm (r-xts): Update to 0.13.2.
Change-Id: I0f551d91a7012fabb117160c54e9c17883a48ca9
2024-01-23 13:36:47 +01:00
3d0fa8fb65
gnu: r-psych: Update to 2.4.1.
...
* gnu/packages/cran.scm (r-psych): Update to 2.4.1.
Change-Id: Iebac111c7dd7a8bab9df6789c9861e499b4439d3
2024-01-23 13:36:47 +01:00
b12217b3d0
gnu: r-timechange: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-timechange): Update to 0.3.0.
Change-Id: I5c8dce37f2f268145b7288845ef0c7d1115eb445
2024-01-23 13:36:47 +01:00
254eb0d3fd
gnu: r-ctrdata: Update to 1.17.0.
...
* gnu/packages/cran.scm (r-ctrdata): Update to 1.17.0.
[propagated-inputs]: Add r-digest.
Change-Id: I505ea3605193eb461001c8e58cd9ef8d725d8f63
2024-01-23 13:36:46 +01:00
5082ea45f9
gnu: r-ps: Update to 1.7.6.
...
* gnu/packages/cran.scm (r-ps): Update to 1.7.6.
Change-Id: Id7ef2ce2c709c8bffb7d3257324390400d55b29e
2024-01-23 13:36:46 +01:00
e7aee059ad
gnu: r-paletteer: Update to 1.6.0.
...
* gnu/packages/cran.scm (r-paletteer): Update to 1.6.0.
Change-Id: Iff3c0636541bf3deb7a50706a62a44331a77e820
2024-01-23 13:36:46 +01:00
704b793d82
gnu: r-gensa: Update to 1.1.14.
...
* gnu/packages/cran.scm (r-gensa): Update to 1.1.14.
Change-Id: I6557eeb5f277908a25ded34321153ceddc927a09
2024-01-23 13:36:46 +01:00
d7a7054b7e
gnu: r-shadowtext: Update to 0.1.3.
...
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.3.
Change-Id: I771671f689c247cbb7ade0ad0d2b78a6e28514ff
2024-01-23 13:36:46 +01:00
2e08d0d631
gnu: Add r-suntools.
...
* gnu/packages/cran.scm (r-suntools): New variable.
Change-Id: Id1cb0828e8046ce635edc124c3f99bc891806cdd
2024-01-23 13:36:46 +01:00
f0d8d59807
gnu: r-antiword: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-antiword): Update to 1.3.2.
[source]: Simplify snippet.
[arguments]: Remove trailing #T from build phase.
[synopsis]: Change capitalization.
[description]: Use complete sentences.
Change-Id: I0cffbda247dd57462f89c20a94773f871a029b60
2024-01-23 13:36:46 +01:00
6f6cfb8365
gnu: python-tdda: Remove relax-requirements phase.
...
* gnu/packages/python-science.scm (python-tdda)[arguments]<#:phases>: Remove relax-requirements phase.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-22 21:48:28 +00:00
ffc5fefce3
gnu: python-evdev: Enable tests.
...
* gnu/packages/linux.scm (python-evdev): Enable tests and apply new
package style.
[source]: Use git checkout which provides tests.
[build-system]: Swap to pyproject-build-system.
[arguments]<#:test-flags>: Silent tests requiring access to /dev/uinput.
<#:phases>: Remove trailing #t from lambda.
[native-inputs]: Add python-pytest.
Change-Id: I9474459428d94eefa501458d62f24c6918958515
2024-01-22 21:31:32 +00:00
014d0541ae
gnu: python-evdev: Update to 1.5.0.
...
* gnu/packages/linux.scm (python-evdev): Update to 1.5.0.
Change-Id: Id83c621f31222ebfb4848366b94e1f16c75742aa
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-22 21:03:15 +00:00
40cff060fd
gnu: Add emacs-coterm.
...
* gnu/packages/emacs-xyz.scm (emacs-coterm): New variable.
Change-Id: Ib96078fa906242dd532a0c949de3049b92804891
2024-01-22 21:40:09 +01:00
497780ad25
news: Add entry for removing linux-libre 4.14 (EoL).
...
* etc/news.scm: Add entry for linux-libre 4.14 removal and add my copyright
header.
Change-Id: I5c2418bc22a4ae2bba63c1cf77e66d2574766e01
2024-01-22 13:25:30 -05:00
10a1935963
gnu: Remove linux-libre 4.14.
...
* gnu/packages/linux.scm (linux-libre-4.14-version,
linux-libre-4.14-gnu-revision, deblob-scripts-4.14,
linux-libre-4.14-pristine-source, linux-libre-4.14-source,
linux-libre-headers-4.14, linux-libre-4.14, linux-libre-arm-generic-4.14,
linux-libre-arm-omap2plus-4.14): Remove variables.
* gnu/packages/aux-files/linux-libre/4.14-arm.conf,
gnu/packages/aux-files/linux-libre/4.14-i686.conf,
gnu/packages/aux-files/linux-libre/4.14-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove aforementioned .conf files.
* gnu/tests/base.scm (%test-linux-libre-4.14): Remove variable.
Change-Id: I40393b5f46b989848d569c929f1d9c986736553e
2024-01-22 13:24:20 -05:00
29c26a8d30
gnu: moonlight-qt: Update to 5.0.1.
...
* gnu/packages/games.scm (moonlight-qt): Update to 5.0.1.
[arguments]<#:phases>: Update moonlight-qt.pro file substitute to not include
bundled h264bitstream library.
Change-Id: I9c68f7c6de39a0d78c6ef5b48d2272cdf3f771b5
2024-01-22 19:12:43 +03:00
e677aceb5d
gnu: moonlight-common: Update to 5.0.1-1.5de4a5b.
...
* gnu/packages/games.scm (moonlight-common): Update to 5.0.1-1.5de4a5b.
Change-Id: I6b539162c0d57830d41059611746a7d376322345
2024-01-22 19:12:43 +03:00
d52d4b833a
gnu: h264bitstream: Update to 0.2.0-1.ae72f73.
...
* gnu/packages/video.scm (h264bitstream): Update to 0.2.0-1.ae72f73.
Change-Id: I0aa9422f236995086275c492a2093f2acb894ab1
2024-01-22 19:12:43 +03:00
9f80c86672
gnu: guile-goblins: Update to 0.12.0.
...
* gnu/packages/guile-xyz.scm (guile-goblins): Update to 0.12.0.
Change-Id: I0768ca6118c8b16ea6e5ae235dfefa7d28f727e3
2024-01-22 10:05:26 -05:00
916fb5347a
guix: download: Add support for git repositories.
...
* guix/scripts/download.scm (git-download-to-store*): Add new variable.
(copy-recursively-without-dot-git): New variable.
(git-download-to-file): Add new variable.
(show-help): Add 'git', 'commit', 'branch' and 'recursive'options
help message.
(%default-options): Add default value for 'git-reference' and
'recursive' options.
(%options): Add 'git', 'commit', 'branch' and 'recursive' command
line options.
(guix-download) [hash]: Compute hash with 'file-hash*' instead of
'port-hash' from (gcrypt hash) module. This allows us to compute
hashes for directories.
* doc/guix.texi (Invoking guix-download): Add @item entries for
`git', `commit', `branch' and `recursive' options. Add a paragraph in
the introduction.
* tests/guix-download.sh: New tests. Move variables and trap definition
to the top of the file.
Change-Id: Ic2c428dca4cfcb0d4714ed361a4c46609339140a
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-01-22 10:02:28 -05:00
1bdeec5d66
services: connman: Add 'connman-general-configuration'.
...
Currently connman has no main.conf as specified in 'man 5 connman.conf' which
would allow setting NetworkInterfaceBalcklist and other useful options.
This patch adds connman-general-configuration, serializes it and
passes to connmad with --config= flag.
All configuration fields are 'maybe-*' deliberately, to not disturb current
users and not require supporting configuration changes for connmand.
* gnu/services/networking.scm (<connman-general-configuration>): New
configuration record to represent main.conf for connmand.
(<connman-configuration>)[general-configuration]: New field.
(connman-shepherd-service): Honor it.
*doc/guix.texi (Networking Services): Add generated configuration.
Change-Id: I5d78f49e8b2d5e0b3cbd7b8b604e8a254b6397e8
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-01-22 09:51:32 -05:00
2b04ebaa74
gnu: cgit: Fix patch-absolute-file-names phase.
...
* gnu/packages/version-control.scm (cgit) [arguments]: Fix regexp in patch-absolute-file-names phase.
Change-Id: I06c624ba23bfd0b8ca45045d1d2155c53258047e
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-01-22 08:54:47 -05:00
bafc6efe48
gnu: r-flowstats: Update to 4.14.1.
...
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.14.1.
Change-Id: I0a5d93cb08d169759b3f3817ab9b68b76fd5883f
2024-01-22 13:54:46 +01:00
1849ed7487
gnu: r-flowworkspace: Update to 4.14.2.
...
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.2.
Change-Id: I7d47b89fedf207b930fc8bef6aedcbce4628a2d9
2024-01-22 13:54:46 +01:00
522a646714
gnu: r-gosemsim: Update to 2.28.1.
...
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.28.1.
[propagated-inputs]: Add r-yulab-utils.
Change-Id: Idf93e061ef43c2900a96fa9cafeaff95d13fa3be
2024-01-22 13:54:46 +01:00
Ricardo Wurmus
Troy Figiel
Sharlatan Hellseher
Gabriel Wicki
Wilko Meyer
Oleg Pykhalov
David Thompson
Romain GARBAGE
muradm