77f1bd9dea
gnu: rust-diesel: Update to 1.4.6 [fixes CVE-2021-28305].
...
* gnu/packages/crates-io.scm (rust-diesel): Update to 1.4.6.
[native-inputs]: Add sqlite for tests.
[arguments]<#:cargo-inputs>: Remove rust-bigdecimal-0.2 (incompatible),
rust-libsqlite3-sys-0.15, rust-num-bigint-0.3 and rust-uuid-0.7. Add
rust-bigdecimal-0.1, rust-libsqlite3-sys-0.20, rust-num-bigint-0.2,
rust-uuid-0.5 and rust-uuid-0.8.
[arguments]<#:phases>: Replace 'check phase to provide required feature
arguments and exclude failing 'expression::count::count' test.
[synopsis]: Solve lint error by removing article at the beginning.
2021-03-13 02:07:28 +01:00
372a16e5c7
gnu: rust-dotenv-0.10: Fix build by adding missing cargo input.
...
* gnu/packages/crates-io.scm (rust-dotenv-0.10)[arguments]<#:cargo-inputs>:
Add rust-syn-0.11.
2021-03-13 02:04:29 +01:00
62b1ae7444
gnu: Add rust-bigdecimal-0.1.
...
* gnu/packages/crates-io.scm (rust-bigdecimal-0.1): New variable.
2021-03-13 02:04:28 +01:00
cad4aa667c
gnu: nginx-documentation: Update to 1.19.8-2673-4398fd0f0341.
...
* gnu/packages/web.scm (nginx-documentation): Update to 1.19.8-2673-4398fd0f0341.
2021-03-13 01:00:31 +01:00
c325099535
gnu: nginx: Update to 1.19.8.
...
* gnu/packages/web.scm (nginx): Update to 1.19.8.
2021-03-13 01:00:31 +01:00
347cc54200
gnu: apache-thrift: Update to 0.14.1.
...
* gnu/packages/rpc.scm (apache-thrift): Update to 0.14.1.
2021-03-13 01:00:31 +01:00
fab02edde0
gnu: wireguard-tools: Update to 1.0.20210223.
...
* gnu/packages/vpn.scm (wireguard-tools): Update to 1.0.20210223.
2021-03-13 01:00:30 +01:00
deb8853243
gnu: eid-mw: Update to 5.0.14.
...
* gnu/packages/security-token.scm (eid-mw): Update to 5.0.14.
2021-03-13 01:00:30 +01:00
1e71578c4a
gnu: micropython: Update to 1.14.
...
* gnu/packages/python.scm (micropython): Update to 1.14.
2021-03-13 01:00:30 +01:00
4ddf56c136
gnu: libfreenect: Update to 0.6.2.
...
* gnu/packages/openkinect.scm (libfreenect): Update to 0.6.2.
2021-03-13 01:00:30 +01:00
6862ae1a61
gnu: photoflare: Update to 1.6.7.
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* gnu/packages/photo.scm (photoflare): Update to 1.6.7.
2021-03-13 01:00:30 +01:00
bd0808f131
gnu: aws-sdk-cpp: Update to 1.8.159.
...
* gnu/packages/cpp.scm (aws-sdk-cpp): Update to 1.8.159.
[arguments]: Build as shared library
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-12 23:58:55 +01:00
9719084535
gnu: aws-c-event-stream: Update to 0.2.7.
...
* gnu/packages/c.scm (aws-c-event-stream): Update to 0.2.7.
[arguments]: Build as shared library.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-12 23:58:55 +01:00
8ea7b6f91e
gnu: Add aws-c-io.
...
* gnu/packages/c.scm (aws-c-io): New variable.
* gnu/packages/patches/aws-c-io-cmake-prefix.patch,
gnu/packages/patches/aws-c-io-disable-networking-tests.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add them.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-12 23:58:54 +01:00
1b51888863
gnu: Add s2n.
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* gnu/packages/tls.scm (s2n): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-12 23:58:54 +01:00
748e2ec07a
gnu: Add aws-c-cal.
...
* gnu/packages/c.scm (aws-c-cal): New variable.
* gnu/packages/patches/aws-c-cal-cmake-prefix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-12 23:58:54 +01:00
cc95d03ec7
gnu: aws-checksums: Build as shared library.
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* gnu/packages/c.scm (aws-checksums)[arguments]: Build as shared library.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-12 23:58:54 +01:00
9d541e97e9
gnu: aws-c-common: Update to 0.5.2.
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* gnu/packages/c.scm (aws-c-common): Update to 0.5.2.
[arguments]: Build as shared library.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-12 23:58:54 +01:00
bb5d84a048
gnu: ImageMagick: Fix version number in build configuration of grafted replacement.
...
Fixes <https://bugs.gnu.org/47110 >.
This is a followup to commits 852ba914a482e887ba48
2021-03-12 14:41:17 -05:00
a39faf1abd
gnu: OpenSSL: Fix version number in build configuration.
...
Fixes <https://bugs.gnu.org/47108 >.
This is a followup to commit 4a8b529ce1
2021-03-12 14:22:21 -05:00
35b3ab8e57
gnu: libtiff: Fix documentation directory name in grafted replacement.
...
Fixes <https://bugs.gnu.org/47107 >.
This is a followup to commit 6320700b11
2021-03-12 14:10:31 -05:00
a5a5ec5603
gnu: nushell: Update to 0.28.0.
...
* gnu/packages/shells.scm (nushell):
(rust-nu-cli-0.28):
(rust-nu-command-0.28):
(rust-nu-data-0.28):
(rust-nu-engine-0.28):
(rust-nu-errors-0.28):
(rust-nu-json-0.28):
(rust-nu-plugin-0.28):
(rust-nu-plugin-binaryview-0.28):
(rust-nu-plugin-chart-0.28):
(rust-nu-plugin-fetch-0.28):
(rust-nu-plugin-from-sqlite-0.28):
(rust-nu-plugin-inc-0.28):
(rust-nu-plugin-match-0.28):
(rust-nu-plugin-post-0.28):
(rust-nu-plugin-ps-0.28):
(rust-nu-plugin-s3-0.28):
(rust-nu-plugin-sys-0.28):
(rust-nu-plugin-textview-0.28):
(rust-nu-plugin-to-bson-0.28):
(rust-nu-plugin-to-sqlite-0.28):
(rust-nu-plugin-tree-0.28):
(rust-nu-plugin-xpath-0.28):
(rust-nu-protocol-0.28):
(rust-nu-source-0.28):
(rust-nu-stream-0.28):
(rust-nu-test-support-0.28):
(rust-nu-value-ext-0.28): Update to 0.28.0.
(rust-nu-ansi-term-0.28): New variable.
2021-03-12 16:09:37 +01:00
56613cc619
gnu: Add rust-minus-3.
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* gnu/packages/crates-io.scm (rust-minus-3): New variable.
2021-03-12 16:09:37 +01:00
1fcaac7941
gnu: rust-surf-2: Update to 2.2.0.
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* gnu/packages/crates-io.scm (rust-surf-2): Update to 2.2.0.
2021-03-12 16:09:37 +01:00
7d29bfd567
gnu: rust-http-client-6: Update to 6.3.4.
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* gnu/packages/crates-io.scm (rust-http-client-6): Update to 6.3.4.
2021-03-12 16:09:36 +01:00
10a1ab0d26
gnu: Add rust-async-tls-0.10.
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* gnu/packages/crates-io.scm (rust-async-tls-0.10): New variable.
2021-03-12 16:09:36 +01:00
6fe6ab50bd
gnu: rust-webpki-0.21: Update to 0.21.4.
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* gnu/packages/crates-io.scm (rust-webpki-0.21): Update to 0.21.4.
2021-03-12 16:09:36 +01:00
a7c8060360
gnu: rust-ring-0.16: Update to 0.16.20.
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* gnu/packages/crates-io.scm (rust-ring-0.16): Update to 0.16.20.
[arguments]: Skip tests.
2021-03-12 16:09:35 +01:00
0f0589b8cd
gnu: Add rust-deadpool-0.7.
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* gnu/packages/crates-io.scm (rust-deadpool-0.7): New variable.
2021-03-12 16:09:35 +01:00
b89714b40a
gnu: rust-url-2: Update to 2.2.1.
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* gnu/packages/crates-io.scm (rust-url-2): Update to 2.2.1.
2021-03-12 16:09:09 +01:00
a04aef2430
utils: Use Guile-zlib for gzip compression and decompression.
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Fixes <https://bugs.gnu.org/46967 >.
* guix/utils.scm (decompressed-port): Call 'make-zlib-input-port'
instead of invoking %GZIP.
(compressed-output-port): Call 'make-zlib-output-port' instead of
invoking %GZIP.
* doc/guix.texi (Requirements): Require Guile-zlib >= 0.1.0.
2021-03-12 15:59:46 +01:00
97b45977f4
gnu: guile-zlib: Update to 0.1.0.
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* gnu/packages/guile.scm (guile-zlib): Update to 0.1.0.
2021-03-12 15:59:45 +01:00
2e5ac371e7
gnu: Add sbcl-stumpwm-disk.
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* gnu/packages/wm.scm: (sbcl-stumpwm-disk): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-03-12 15:06:51 +01:00
77ee8af58c
gnu: stumpwm-contrib: Update to 0.0.1-3.a7dc1c.
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* gnu/packages/wm.scm (stumpwm-contrib): Update to 0.0.1-3.a7dc1c.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-03-12 15:06:51 +01:00
a56b331e07
gnu: Add gnuais.
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* gnu/packages/radio.scm (gnuais): New variable.
2021-03-12 15:06:50 +01:00
df6b3c25bb
gnu: r-systempiper: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-systempiper): Move from here...
* gnu/packages/bioconductor.scm (r-systempiper): ...to here.
2021-03-12 14:45:55 +01:00
8957efa8ef
gnu: r-shortread: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-shortread): Move from here...
* gnu/packages/bioconductor.scm (r-shortread): ...to here.
2021-03-12 14:45:54 +01:00
2a97057688
gnu: r-gostats: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-gostats): Move from here...
* gnu/packages/bioconductor.scm (r-gostats): ...to here.
2021-03-12 14:45:54 +01:00
4e7cf96c9f
gnu: r-category: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-category): Move from here...
* gnu/packages/bioconductor.scm (r-category): ...to here.
2021-03-12 14:45:54 +01:00
031fdda47a
gnu: r-gseabase: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-gseabase): Move from here...
* gnu/packages/bioconductor.scm (r-gseabase): ...to here.
2021-03-12 14:45:54 +01:00
f44079bc21
gnu: r-rbgl: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-rbgl): Move from here...
* gnu/packages/bioconductor.scm (r-rbgl): ...to here.
2021-03-12 14:45:54 +01:00
ff92c2873c
gnu: r-annotationforge: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Move from here...
* gnu/packages/bioconductor.scm (r-annotationforge): ...to here.
2021-03-12 14:45:53 +01:00
d769b10714
gnu: r-dexseq: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-dexseq): Move from here...
* gnu/packages/bioconductor.scm (r-dexseq): ...to here.
2021-03-12 14:45:53 +01:00
373545855d
gnu: r-deseq2: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-deseq2): Move from here...
* gnu/packages/bioconductor.scm (r-deseq2): ...to here.
2021-03-12 14:45:53 +01:00
a35ea5fed9
gnu: r-genefilter: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-genefilter): Move from here...
* gnu/packages/bioconductor.scm (r-genefilter): ...to here.
2021-03-12 14:45:53 +01:00
323aec6ad9
gnu: r-bioassayr: Update home page.
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* gnu/packages/bioconductor.scm (r-bioassayr)[home-page]: Follow permanent
redirect.
2021-03-12 14:41:15 +01:00
2528cad451
gnu: r-bioassayr: Update to 1.28.2.
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* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.2.
2021-03-12 14:41:14 +01:00
8c8d365ca3
gnu: r-chemminer: Update to 3.42.2.
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* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.2.
2021-03-12 14:41:14 +01:00
4f617bfb8e
gnu: r-circrnaprofiler: Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.4.2.
2021-03-12 14:41:14 +01:00
8a8e8198ec
gnu: Add r-puniform.
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* gnu/packages/statistics.scm (r-puniform): New variable.
2021-03-12 14:34:22 +01:00
Léo Le Bouter
Tobias Geerinckx-Rice
Greg Hogan
Leo Famulari
Nicolas Goaziou
Ludovic Courtès
Sharlatan Hellseher
Guillaume Le Vaillant
zimoun
Ricardo Wurmus
Lars-Dominik Braun