555e3a951f
gnu: opensp: Fix build.
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This is a follow up commit to b84d0b81b2
2023-04-21 08:29:00 -04:00
184658e282
gnu: bppsuite: Update to 2.4.1.
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* gnu/packages/bioinformatics.scm (bppsuite): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build.
[inputs]: Use list.
[home-page]: Changed to github page.
2023-04-21 14:01:25 +02:00
2a20acf24b
gnu: bpp-popgen: Update to 2.4.1.
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* gnu/packages/bioinformatics.scm (bpp-popgen): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
2023-04-21 14:01:22 +02:00
2babf3d7d7
gnu: Add maffilter.
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* gnu/packages/bioinformatics.scm (maffilter): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-21 13:15:02 +02:00
4065d9dfd5
gnu: tensorflow: Adjust for Python 3.10 compatibility.
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* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Replace build
phase 'python3.9-compatibility with 'python3.10-compatibility; patch for move
from "collections" to "collections.abc"; add well-meaning but potentially
reckless patch to remove overwrite error for __or__ and __ror__ methods;
adjust farmhash sources to build with GCC 11; do not use distutils.sysconfig.
2023-04-21 13:10:33 +02:00
95d26d8530
gnu: python-protobuf-3.6: Patch for Python 3.10.
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* gnu/packages/protobuf.scm (python-protobuf-3.6)[arguments]: Patch
collections import.
[native-inputs]: Add python-setuptools-for-tensorflow.
2023-04-21 13:10:33 +02:00
e9f01bfc97
gnu: python-setuptools-for-tensorflow: Patch for Python 3.10 compatibility.
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* gnu/packages/python-xyz.scm (python-setuptools-for-tensorflow)[arguments]:
Patch collections imports; remove wininst support.
2023-04-21 13:10:33 +02:00
0ea5ef000d
gnu: grpc-1.16.1: Correct input modifications.
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abseil-cpp is not part of the native-inputs but of the inputs.
* gnu/packages/rpc.scm (grpc-1.16.1)[native-inputs]: Only replace protobuf.
[inputs]: Replace abseil-cpp.
2023-04-21 13:10:33 +02:00
54616b0bae
gnu: python-grpcio: Rebuild Cythonized source files.
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* gnu/packages/rpc.scm (python-grpcio)[source]: Delete generated cpp file.
[build-system]: Use pyproject-build-system.
[arguments]: Patch setup.py to add grpc headers to search path.
[inputs]: Replace abseil-cpp with abseil-cpp-20211102.0; add
grpc-for-python-grpcio.
[native-inputs]: Add python-cython.
2023-04-21 13:10:33 +02:00
d0ca8f41c1
gnu: Add grpc-for-python-grpcio.
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* gnu/packages/rpc.scm (grpc-for-python-grpcio): New variable.
2023-04-21 13:10:32 +02:00
54db21b9f8
gnu: Add abseil-cpp-20211102.0.
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* gnu/packages/cpp.scm (abseil-cpp-20211102.0): New variable.
2023-04-21 13:10:32 +02:00
7c75228c8b
gnu: Add bpp-phyl-omics.
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* gnu/packages/bioinformatics.scm (bpp-phyl-omics): New variable.
2023-04-21 12:56:39 +02:00
722a8b2296
gnu: Add bpp-seq-omics.
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* gnu/packages/bioinformatics.scm (bpp-seq-omics): New variable.
2023-04-21 12:56:39 +02:00
5107a8a1a3
gnu: bpp-phyl: Update to 2.4.1.
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* gnu/packages/bioinformatics.scm (bpp-phyl): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build and out-of-source.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
[synopsis]: Use proper capitalization.
2023-04-21 12:56:39 +02:00
627049872b
gnu: bpp-seq: Update to 2.4.1.
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* gnu/packages/bioinformatics.scm (bpp-seq): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build and out-of-source.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
2023-04-21 12:56:38 +02:00
51ef858c94
gnu: bpp-core: Update to 2.4.1.
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* gnu/packages/bioinformatics.scm (bpp-core): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
stored sources.
[arguments]: Remove the disabled parallel-build.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
2023-04-21 12:56:38 +02:00
7cfc226d1e
gnu: luakit: Further improve style.
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This is a followup to d3bc56da04
2023-04-21 12:42:36 +02:00
d3bc56da04
gnu: luakit: Improve package style.
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* gnu/packages/web-browsers.scm (luakit)[arguments]<#:tests?>: Properly
disable tests instead of deleting CHECK phase.
<#:make-flags, #:phases>: Use G-expressions. Remove trailing #T.
<#:test-targes>: Add it, for the record.
[inputs]: Remove labels.
2023-04-21 11:18:56 +02:00
1027f10199
gnu: Add alienblaster.
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* gnu/packages/games.scm (alienblaster): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:55 +02:00
2662f074a0
gnu: Add clog.
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* gnu/packages/parallel.scm (clog): New variable.
* gnu/packages/patches/clog-fix-shared-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:55 +02:00
9d7ba42dbf
gnu: a2ps: Update to 4.15.4
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* gnu/packages/pretty-print.scm (a2ps): Update to 4.15.4
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:55 +02:00
1322672667
gnu: kakoune: update to 2022.10.31.
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* gnu/packages/text-editors.scm (kakoune): Update to 2022.10.31.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:54 +02:00
482196a855
gnu: terminator: Update to 2.1.3
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* gnu/packages/gnome.scm (terminator): Update to 2.1.3
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:54 +02:00
c3f51e1599
gnu: wlr-randr: Update to 0.3.0.
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* gnu/packages/wm.scm (wlr-randr): Update to 0.3.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:54 +02:00
87e37ac723
gnu: mpdevil: Update to 1.10.2.
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* gnu/packages/mpd.scm (mpdevil): Update to 1.10.2.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:54 +02:00
74e2ac6a0e
gnu: icewm: Update to 3.3.3.
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* gnu/packages/wm.scm (icewm): Update to 3.3.3.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:53 +02:00
604f911d2c
gnu: python-txtorcon: Fix build.
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gnu/packages/python-crypto.scm (python-txtorcon): Fix build failure.
[propagated-inputs]: Add PYTHON-PYOPENSSL.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:53 +02:00
db4daa4192
gnu: wireshark: Update to 4.0.5.
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* gnu/packages/networking.scm (wireshark): Update to 4.0.5.
2023-04-21 10:50:53 +02:00
b7747824d8
gnu: komikku: Update to 1.17.0.
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This fixes a version incompatibility with WebkitGTK.
* gnu/packages/gnome.scm (komikku): Update to 1.17.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:52 +02:00
b833e481c6
gnu: luakit: Update to 2.3.3.
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* gnu/packages/web-browsers.scm (luakit): Update to 2.3.3
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21 10:50:52 +02:00
823b1567cb
gnu: emacs-no-littering: Update to 1.3.0.
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* gnu/packages/emacs-xyz.scm (emacs-no-littering): Update to 1.3.0.
[propagated-inputs]: Add EMACS-COMPAT.
2023-04-21 10:50:52 +02:00
ec13119d20
gnu: emacs-embark: Update to 0.22.1.
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* gnu/packages/emacs-xyz.scm (emacs-embark): Update to 0.22.1.
2023-04-21 10:50:52 +02:00
4c6524d981
gnu: emacs-elfeed-score: Build and install info documentation.
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* gnu/packages/emacs-xyz.scm (emacs-elfeed-score)[arguments]<#:phases>: Add
a phase to build info files.
[native-inputs]: Add TEXINFO.
2023-04-21 10:50:51 +02:00
c0d324095e
gnu: emacs-elfeed-score: Update to 1.2.5.
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* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.5.
2023-04-21 10:50:51 +02:00
85f56611da
gnu: emacs-doom-modeline: Update to 3.4.0.
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* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 3.4.0.
2023-04-21 10:50:51 +02:00
4c88e73786
gnu: emacs-buttercup: Update to 1.31.
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* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.31.
2023-04-21 10:50:50 +02:00
0460ff069e
gnu: emacs-emms: Update to 15.
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* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 15.
2023-04-21 10:50:50 +02:00
fe4978d5b5
gnu: python-numba: Update to 0.56.4.
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* gnu/packages/python-xyz.scm (python-numba): Update to 0.56.4.
2023-04-21 01:24:02 -04:00
b2a5cb346e
gnu: python-llvmlite: Update to 0.39.1.
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* gnu/packages/llvm.scm (python-llvmlite): Update to 0.39.1.
[phases]: Remove patch-reference-to-llvmlite.so and skip-failing-tests phases.
2023-04-21 01:21:46 -04:00
aee7fc2e41
gnu: libmodulemd: Remove fix-docbook-references phase.
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* gnu/packages/rpm.scm (libmodulemd) [arguments]: Remove
fix-docbook-references phase.
[native-inputs]: Add libxml2.
2023-04-21 00:44:08 -04:00
5fc9edc351
gnu: libnotify: Use gexps and remove input labels.
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* gnu/packages/gnome.scm (libnotify) [arguments]: Delete trailing #t.
[native-inputs]: Delete input labels.
2023-04-21 00:44:07 -04:00
62142016a4
gnu: plymouth: Delete fix-docbook phase.
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* gnu/packages/freedesktop.scm (plymouth) [arguments]: Delete fix-docbook phase.
[native-inputs]: Add libxml2.
2023-04-21 00:44:07 -04:00
8c3c5183e8
gnu: sysbench: Remove fix-docbook phase.
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* gnu/packages/benchmark.scm (sysbench) [arguments]: Remove the fix-docbook phase.
2023-04-21 00:44:07 -04:00
5ecdcd6afb
gnu: sysbench: Fix test suite.
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* gnu/packages/benchmark.scm (sysbench) [arguments]: Patch egrep in the
patch-test-runner phase.
2023-04-21 00:44:07 -04:00
09cc2636ef
gnu: adcli: Add zlib.
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* gnu/packages/sssd.scm (adcli) [inputs]: Add zlib.
2023-04-21 00:44:07 -04:00
8f0a110503
gnu: adcli: Delete use-local-docbook phase.
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* gnu/packages/sssd.scm (adcli) [arguments]: Delete use-local-docbook phase.
[native-inputs]: Replace docbook-xml with docbook-xml-4.3. Add libxml2.
2023-04-21 00:44:07 -04:00
704f477333
gnu: docbook2x: Use gexps and remove input labels.
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* gnu/packages/docbook.scm (docbook2x) [arguments]: Use gexps.
[inputs]: Remove input labels.
2023-04-21 00:44:07 -04:00
e3edddd12d
gnu: asciidoc: Delete trailing #t.
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* gnu/packages/documentation.scm (asciidoc) [arguments]: Delete trailing #t.
2023-04-21 00:44:06 -04:00
0291b8d87a
gnu: freerdp: Remove input labels.
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* gnu/packages/rdesktop.scm (freerdp) [inputs]: Remove labels.
2023-04-21 00:44:06 -04:00
b84d0b81b2
gnu: opensp: Remove patch-docbook-xml phase.
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* gnu/packages/xml.scm (opensp) [arguments]: Remove patch-docbook-xml
phase. Use gexps.
[native-inputs]: Remove labels.
2023-04-21 00:44:06 -04:00
Maxim Cournoyer
Mădălin Ionel Patrașcu
Ricardo Wurmus
Nicolas Goaziou
Yovan Naumovski
Antero Mejr
Andy Tai
Eidvilas Markevičius
kiasoc5
Brendan Tildesley
Liliana Marie Prikler
Raphaël Mélotte
John Kehayias