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Author SHA1 Message Date
Ricardo Wurmus b2a2f32130
gnu: r-flowcore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 1.52.1.
[propagated-inputs]: Remove r-corpcor, r-graph, r-mass, and r-rrcov; add
r-cytolib.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 8042087804
gnu: r-flowmeans: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.46.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus ba71567acd
gnu: r-flowsom: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.18.0.
[propagated-inputs]: Add r-cytoml, r-flowworkspace, and r-rcolorbrewer; remove
r-flowutils.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 4930a89ad5
gnu: r-mixomics: Update to 6.10.6. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.6.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 51ffac455e
gnu: r-rcistarget: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.6.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 42b06298ef
gnu: r-cicero: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 33ce50e322
gnu: r-genie3: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.8.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 3672b74f6f
gnu: r-roc: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.62.0.
[propagated-inputs]: Add r-knitr.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 9eade2294e
gnu: r-watermelon: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.30.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus f5ef7dd6b7
gnu: r-gdsfmt: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 8b941a50ef
gnu: r-bigmelon: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.12.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 2223bbc726
gnu: r-seqbias: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.34.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 02c18abe62
gnu: r-reqon: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.32.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus c0cba4b542
gnu: r-wavcluster: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.20.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus cb734c60dc
gnu: r-timeseriesexperiment: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.4.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 6f5415d5f6
gnu: r-variantfiltering: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 053a2127bc
gnu: r-genomegraphs: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-genomegraphs): Update to 1.46.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus e13f977312
gnu: r-wavetiling: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-wavetiling): Update to 1.28.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus e2f481dad0
gnu: r-variancepartition: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 0b0906c845
gnu: r-htqpcr: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.40.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus 989be6df99
gnu: r-unifiedwmwqpcr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.22.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus 0726645eca
gnu: r-genefilter: Update to 1.68.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.68.0.
[propagated-inputs]: Remove r-s4vectors and add r-biocgenerics.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus 867018e138
gnu: r-deseq2: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.26.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus ebc81e300c
gnu: r-dexseq: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.32.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus 12c4555d44
gnu: r-annotationforge: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.28.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus 33a2acb757
gnu: r-rbgl: Update to 1.62.1. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.62.1.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus d2661841be
gnu: r-gseabase: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.48.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus 4afcf941d2
gnu: r-category: Update to 2.52.1. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.52.1.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus 545730891e
gnu: r-gostats: Update to 2.52.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.52.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus f29c9f0d33
gnu: r-shortread: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus 58fd68b299
gnu: r-systempiper: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.20.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus f8f815667d
gnu: r-grohmm: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.20.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus 74d59b6748
gnu: r-biocviews: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.54.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus ef96154433
gnu: r-biocstyle: Update to 2.14.2. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.14.2.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus 7758d5205c
gnu: r-bioccheck: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.22.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus d37daf8929
gnu: r-s4vectors: Update to 0.24.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.1.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus d2723484f6
gnu: r-iranges: Update to 2.20.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.20.1.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus 937f3a46eb
gnu: r-genomeinfodb: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.22.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus da03fa3c90
gnu: r-edger: Update to 3.28.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus 8f5d2c3abc
gnu: r-variantannotation: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.32.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus eea491e5c6
gnu: r-limma: Update to 3.42.0. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.42.0.
 2019-12-15 15:39:03 +01:00
Ricardo Wurmus da6edb199d
gnu: r-xvector: Update to 0.26.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.26.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus 0202b13e8b
gnu: r-genomicranges: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.38.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus 8d1c3666d7
gnu: r-biobase: Update to 2.46.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.46.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus de9ae3e7b1
gnu: r-annotationdbi: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.48.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus 68a9d9f26a
gnu: r-biomart: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.42.0.
[propagated-inputs]: Add r-biocfilecache, r-openssl, and r-rappdirs; remove
r-rcurl.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus 5854a4a265
gnu: r-biocparallel: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.20.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus 15cd3f6ef5
gnu: r-biostrings: Update to 2.54.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.54.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus e1d681e2af
gnu: r-rsamtools: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.1.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus 4ada4fb745
gnu: r-delayedarray: Update to 0.12.0. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus 264db038c6
gnu: r-summarizedexperiment: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.16.0.
 2019-12-15 15:39:02 +01:00
Ricardo Wurmus 55e515d206
gnu: r-genomicalignments: Update to 1.22.1. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.22.1.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus 15187da9e7
gnu: r-rtracklayer: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.46.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus 9fec340391
gnu: r-genomicfeatures: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.38.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus 323f42b2ca
gnu: r-topgo: Update to 2.37.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.37.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus e3a2b96c80
gnu: r-bsgenome: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.54.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus bca1c45e4e
gnu: r-impute: Update to 1.60.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.60.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus b590742362
gnu: r-seqpattern: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.18.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus e06b34e8c6
gnu: r-genomation: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.18.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus a9790190d1
gnu: r-seqlogo: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.52.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus a5f9b30338
gnu: r-motifrg: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.30.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus 2f15045400
gnu: r-zlibbioc: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.32.0.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus 108c03a8eb
gnu: r-rhtslib: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.18.0.
[propagated-inputs]: Add curl.
 2019-12-15 15:39:01 +01:00
Ricardo Wurmus 7b6c008960
gnu: r-bamsignals: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.18.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus f375d74072
gnu: r-rcas: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.12.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus 3964f2c24e
gnu: r-mutationalpatterns: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.12.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus 3a0229eba0
gnu: r-tximport: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus 126539d1ae
gnu: r-rhdf5: Update to 2.30.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.30.1.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus 4e5c217684
gnu: r-pcamethods: Update to 1.78.0. 
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.78.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus 589939937d
gnu: r-msnbase: Update to 2.12.0. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.12.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus 597aeb8a34
gnu: r-msnid: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.20.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus 3ccf1e3c20
gnu: r-aroma-light: Update to 3.16.0. 
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.16.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus 783bbe3ace
gnu: r-deseq: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.38.0.
 2019-12-15 15:39:00 +01:00
Ricardo Wurmus 0a6704e226
gnu: r-edaseq: Update to 2.20.0. 
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.20.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus 2beffcb558
gnu: r-interactivedisplaybase: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.24.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus 6339ea22f1
gnu: r-annotationhub: Update to 2.18.0. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.18.0.
[propagated-inputs]: Add r-biocversion.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus c21bf901e2
gnu: r-fastseg: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.32.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus fedba48bb5
gnu: r-keggrest: Update to 1.26.1. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.26.1.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus b342b20a24
gnu: r-gage: Update to 2.36.0. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.36.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus 48c7ee93b7
gnu: r-genomicfiles: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.22.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus dac706c322
gnu: r-complexheatmap: Update to 2.2.0. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.2.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus 2edb116c1c
gnu: r-dirichletmultinomial: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.28.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus e107f3df54
gnu: r-ensembldb: Update to 2.10.2. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.10.2.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus e89032667d
gnu: r-organismdbi: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.28.0.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus 866810e686
gnu: r-biovizbase: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.34.1.
 2019-12-15 15:38:59 +01:00
Ricardo Wurmus 81600df302
gnu: r-ggbio: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.34.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus 89a41696ab
gnu: r-gqtlbase: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.18.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus 67d4fd523d
gnu: r-erma: Update to 1.2.0. 
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.2.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus 14eb0978a8
gnu: r-snpstats: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.36.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus 6fff104191
gnu: r-ldblock: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.16.0.
[propagated-inputs]: Remove r-go-db and r-homo-sapiens.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus cfa93a30b4
gnu: r-gqtlstats: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.18.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus d57b6b4bae
gnu: r-gviz: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.30.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus 2e13f10e89
gnu: r-sushi: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.24.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus 28329991b0
gnu: r-gwascat: Update to 2.18.0. 
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.18.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus 0a16021241
gnu: r-hitc: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.30.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus 8db2915900
gnu: r-fithic: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.12.0.
 2019-12-15 15:38:58 +01:00
Ricardo Wurmus 7557bd0cce
gnu: r-hdf5array: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.1.
[propagated-inputs]: Add r-matrix.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus 1f5d262cfd
gnu: r-rhdf5lib: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.8.0.
[arguments]: Update patches.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus 8804e4b48e
gnu: r-beachmat: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.2.1.
[propagated-inputs]: Add r-matrix.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus 376f2f35b6
gnu: r-singlecellexperiment: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.8.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus bf23416fe1
gnu: r-scater: Update to 1.14.5. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.14.5.
[propagated-inputs]: Remove r-dplyr.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus 964634fa44
gnu: r-scran: Update to 1.14.5. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.14.5.
[propagated-inputs]: Remove r-dynamictreecut.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus c81ccd3076
gnu: r-delayedmatrixstats: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.8.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus 758dfc61ee
gnu: r-mzid: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.24.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus dc9d4832b9
gnu: r-vsn: Update to 3.54.0. 
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.54.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus af87ac3aa7
gnu: r-annotationfilter: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.10.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus 43058ca656
gnu: r-chipseq: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.36.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus 746e1f062e
gnu: r-copywriter: Update to 2.18.0. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.18.0.
 2019-12-15 15:38:57 +01:00
Ricardo Wurmus 32f6059635
gnu: r-affy: Update to 1.64.0. 
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.64.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 51ca216bdf
gnu: r-affyio: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.56.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 065c305ca5
gnu: r-methylkit: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.12.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 2a6ce98b17
gnu: r-sva: Update to 3.34.0. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.34.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus d12328f9fe
gnu: r-protgenerics: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.18.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 3381dc4b5c
gnu: r-mzr: Update to 2.20.0. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.20.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 418d72142c
gnu: r-illuminaio: Update to 0.28.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.28.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus db85744ef3
gnu: r-geoquery: Update to 2.54.1. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.54.1.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 048a43d6a5
gnu: r-scone: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.10.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 2f223b2115
gnu: r-scdd: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.10.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 81a125cdb6
gnu: r-noiseq: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.30.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus 9732e690a5
gnu: r-monocle: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.14.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus dc5237f85e
gnu: r-mast: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.12.0.
[propagated-inputs]: Remove r-blme.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus a5cc1f104b
gnu: r-icobra: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 0383bd05ce
gnu: r-ihw: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 153dc51bfe
gnu: r-lpsymphony: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus a9649c4138
gnu: r-ebseq: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.26.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 96030bf718
gnu: r-deds: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-deds): Update to 1.60.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus bba70cda0a
gnu: r-dnacopy: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.60.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus eb3fd3825c
gnu: r-copynumber: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.26.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 84825e5523
gnu: r-chipexoqual: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.10.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 2e17cbd733
gnu: r-savr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.24.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus c88448d4b8
gnu: r-biocsingular: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 12e2aa96dc
gnu: r-biocneighbors: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.1.
[propagated-inputs]: Remove r-biocgenerics; add r-matrix.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus efd0934733
gnu: r-ruvseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.20.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 2d86dc2062
gnu: r-dnabarcodes: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.16.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 74bb4cdf57
gnu: r-inspect: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.0.
[propagated-inputs]: Remove r-preprocesscore; add r-genomeinfodb and r-kernsmooth.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus 565bb84b31
gnu: r-plgem: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.58.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 9c071144a8
gnu: r-rots: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 728571fbc6
gnu: r-glimma: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus ab7f3cbbeb
gnu: r-goseq: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.38.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus b2b5b03115
gnu: r-ctc: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.60.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus b701ed6e83
gnu: r-genomicinteractions: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus bb841742dd
gnu: r-interactionset: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 595b6c9a89
gnu: r-riboseqr: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 88af7049ea
gnu: r-riboprofiling: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.16.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus b0897fbf95
gnu: r-chipcomp: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.16.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus d77228232d
gnu: r-bayseq: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 23ce5ad1d6
gnu: r-qdnaseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.22.0.
[propagated-inputs]: Remove r-biocparallel; add r-future and r-future-apply.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 8f2a4ea18b
gnu: r-cghcall: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.48.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus 8341f7062e
gnu: r-cghbase: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.46.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus b6c2f098ba
gnu: r-marray: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.64.0.
 2019-12-15 15:38:54 +01:00