Ricardo Wurmus
e58d01faf5
gnu: hisat: fix build on non-x86_64.
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* gnu/packages/bioinformatics.scm (hisat): Add "POPCNT_CAPABILITY=0" to
make-flags on architectures other than x86_64.
2015-02-12 14:09:00 +01:00
Ricardo Wurmus
ce7155d5dd
gnu: Add STAR.
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* gnu/packages/bioinformatics.scm (star): New variable.
2015-02-10 14:37:14 +01:00
Ricardo Wurmus
346a829a85
gnu: Add HISAT.
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* gnu/packages/bioinformatics.scm (hisat): New variable.
2015-02-10 14:37:13 +01:00
Ricardo Wurmus
d7678942f9
gnu: Add flexbar.
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* gnu/packages/bioinformatics.scm (flexbar): New variable.
2015-02-09 10:26:28 +01:00
Ricardo Wurmus
d3517eda25
gnu: Add seqan.
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* gnu/packages/bioinformatics.scm (seqan): New variable.
2015-02-09 10:26:20 +01:00
Ricardo Wurmus
241e122193
gnu: bowtie: fix build errors
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* gnu/packages/bioinformatics.scm (bowtie): Add 'supported-systems' field and
add Makefile patch.
* gnu/packages/patches/bowtie-fix-makefile.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-01-30 10:45:27 +01:00
Ricardo Wurmus
2c7ee16720
gnu: Add bowtie
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* gnu/packages/bioinformatics.scm (bowtie): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-19 18:50:28 +01:00
Ricardo Wurmus
81de56479a
gnu: Add bedtools
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* gnu/packages/bioinformatics.scm (bedtools): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-16 18:17:15 +01:00
Ricardo Wurmus
f3cd952b45
gnu: samtools: disable tests for non-64-bit systems
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* gnu/packages/bioinformatics.scm (samtools): disable tests for all non-64-bit
systems because of an upstream bug in the test data.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-16 18:17:15 +01:00
Ricardo Wurmus
4e10a22168
gnu: Add samtools
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* gnu/packages/bioinformatics.scm: New file
* gnu-system.am (GNU_SYSTEM_MODULES): Add it
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-13 00:01:06 +01:00
