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136162 Commits (134da4611ea38869f324b1302ad84f788abf2c85)

Author SHA1 Message Date
Ricardo Wurmus a1b6df6cf7
gnu: r-scry: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.16.0.

Change-Id: I47c4da2763a994a1763eca403597b41b4514852e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 5ac1127f4a
gnu: r-scrnaseq: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-scrnaseq): Update to 2.18.0.
[propagated-inputs]: Add r-alabaster-base, r-alabaster-matrix, r-alabaster-sce, r-dbi,
r-delayedarray, r-gypsum, r-jsonlite, r-matrix, r-rsqlite, and
r-sparsearray.

Change-Id: Ib72ccf01386df1bc464bea2922e4539968b97805
2024-05-08 12:53:26 +02:00
Ricardo Wurmus d4094eaef4
gnu: r-screpertoire: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.0.0.
[propagated-inputs]: Remove r-doparallel, r-powertcr, and r-vegan; add r-cubature,
r-evmix, r-ggdendro, r-hash, r-inext, r-quantreg, r-rcpp, r-rjson,
r-s4vectors, r-truncdist, and r-vgam.

Change-Id: I0d2647f9d2cee66503e0d76f4ff913fd5662971c
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 0ddc2665e0
gnu: r-scmap: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.26.0.

Change-Id: I8ca259c16274a11e5767e3d652394144418cb91b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 23dd82f6d0
gnu: r-scdblfinder: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.18.0.

Change-Id: Id0180b229c58d25c67ab45725714a07ced6a4f69
2024-05-08 12:53:26 +02:00
Ricardo Wurmus b8959272c5
gnu: r-scannotatr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.10.0.

Change-Id: I3f13f54e33f1d615ef234853c425894239031399
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 51093471ce
gnu: r-saturn: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.12.0.

Change-Id: I187d36aa6b0a29a12c738e4e1c36c12905d3bbd9
2024-05-08 12:53:26 +02:00
Ricardo Wurmus dae9e19df4
gnu: r-rtracklayer: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.64.0.
[inputs]: Add curl.
[propagated-inputs]: Remove r-rcurl; add r-curl and r-httr.

Change-Id: I1d5f33e9feb54fa0ce6e8d7b98fca461e8480c06
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 43cced246b
gnu: r-rtcgatoolbox: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.34.0.

Change-Id: I4d1c6d5f1d6dffe4cd5acf074c86eae1e008a44b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 92ed002d7f
gnu: r-rtcga: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.34.0.

Change-Id: I84fa90b4e055fbce4415f25d9638b7579c73eda8
2024-05-08 12:53:26 +02:00
Ricardo Wurmus d27d69bd4b
gnu: r-rsamtools: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.20.0.

Change-Id: I3ac6535dc9dec0530df1ff5f5552539bd7345c2a
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 27f6990d05
gnu: r-rhdf5filters: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.16.0.

Change-Id: I8730bd79c8f560ff792ad81d34f07f9e28f114e8
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 2871646f25
gnu: r-rhdf5: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.48.0.
[propagated-inputs]: Remove r-s4vectors.

Change-Id: I106a2b526f6baad8b2ccfa2f0376dc1de6f39598
2024-05-08 12:53:25 +02:00
Ricardo Wurmus b5c64bf298
gnu: r-reportingtools: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.44.0.

Change-Id: I18c2701eeefd845562b5d0f26a4bdcb847f9aaeb
2024-05-08 12:53:25 +02:00
Ricardo Wurmus f266dc542f
gnu: r-regioner: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.36.0.

Change-Id: I6eb3497c259eb291094fcc18e1e1f2b0d439d483
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 610170b467
gnu: r-rcy3: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-rcy3): Update to 2.24.0.

Change-Id: I73d35d39e215d2f2bca53be25efd9e30279cfb43
2024-05-08 12:53:25 +02:00
Ricardo Wurmus e13f15ad19
gnu: r-rcas: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.30.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I4c941340d3f31478744c0fedd36ad171e9fe1170
2024-05-08 12:53:25 +02:00
Ricardo Wurmus b31da9257b
gnu: r-rbgl: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.80.0.

Change-Id: I73f6c60bd442c6a660406bbc00929784731e7b77
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 9529783d05
gnu: r-protgenerics: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.36.0.

Change-Id: I6742405e19ef294b39bd5e52d200ac6439656692
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 2cdc26b06b
gnu: r-protgear: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-protgear): Update to 1.8.0.

Change-Id: Ib25dc0ffb76e81a17b95cd3ace591dea8cca3381
2024-05-08 12:53:25 +02:00
Ricardo Wurmus f433fb7a41
gnu: r-powertcr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-powertcr): Update to 1.24.0.

Change-Id: Id89108c25415b044535a8f97d8652e9421f0c244
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 973e3b930b
gnu: r-polyester: Update to 1.39.0.
* gnu/packages/bioconductor.scm (r-polyester): Update to 1.39.0.

Change-Id: I9459129d18e6ad150a64c630dfc66827ff66d2b0
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 884574d5f4
gnu: r-piano: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-piano): Update to 2.20.0.

Change-Id: I172d499e19af64eedd5a1a6a224c0e3712607804
2024-05-08 12:53:25 +02:00
Ricardo Wurmus c112c15aa4
gnu: r-pfamanalyzer: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.4.0.

Change-Id: I43cc527998df850b53d3f9ab50dabc528df4f966
2024-05-08 12:53:25 +02:00
Ricardo Wurmus c7f7ce8c9d
gnu: r-pcamethods: Update to 1.96.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.96.0.

Change-Id: I6443fc5882c1ea7b24580802a6463de3928ded05
2024-05-08 12:53:25 +02:00
Ricardo Wurmus cc2d111ba5
gnu: r-pcaexplorer: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.30.0.

Change-Id: I86c2dc6da62836bcf896f1806379aeaccd0acd8a
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 60287e583e
gnu: r-oscope: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.34.0.

Change-Id: I76719b29a735b50e86c5264a3a515da7607f36a0
2024-05-08 12:53:25 +02:00
Ricardo Wurmus d7fd4fc3e5
gnu: r-organismdbi: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.46.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: If4bfdc334732ee3cd3c2d7cf3891b3c1c421b2f5
2024-05-08 12:53:25 +02:00
Ricardo Wurmus d0ca4e40f1
gnu: r-organism-dplyr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.32.0.

Change-Id: If97310018f8ce54fbf5ea8cd1fdb8ee25d6a9315
2024-05-08 12:53:25 +02:00
Ricardo Wurmus a0c5170668
gnu: r-mzr: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.38.0.

Change-Id: Ia7208452ea50f9864c0285b5da0632e5cf32bbae
2024-05-08 12:53:25 +02:00
Ricardo Wurmus c049e9663d
gnu: r-mzid: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.42.0.

Change-Id: I7a810fb9ee71910a1ca7dad6aacf570f50ab408e
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 58bb51e074
gnu: r-msnid: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.38.0.

Change-Id: Ic42c4c0383c09e6f5cecb50d8a7f1f69b6334307
2024-05-08 12:53:25 +02:00
Ricardo Wurmus b1fb666896
gnu: r-msnbase: Update to 2.30.1.
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.30.1.
[propagated-inputs]: Remove r-xml; add r-psmatch.

Change-Id: Ief36282f6d24273d64cd2408f1e81281d7a1208c
2024-05-08 12:53:25 +02:00
Ricardo Wurmus f39bb85461
gnu: r-msa: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-msa): Update to 1.36.0.

Change-Id: I5c2303570cbdb31c87485bbb8a38aaf5ca902364
2024-05-08 12:53:25 +02:00
Ricardo Wurmus a249750984
gnu: r-mutationalpatterns: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.14.0.

Change-Id: I157e2820d25d629a15247dbeffdff9026f164eab
2024-05-08 12:53:25 +02:00
Ricardo Wurmus 175da97b80
gnu: r-muscat: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.18.0.

Change-Id: I4615d459a867a26f296d0d4ab8f3a24ecac36bc5
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 16a2fd2158
gnu: r-modstrings: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-modstrings): Update to 1.20.0.

Change-Id: Ibd73b4256e9b13f8276aa0018e0d6c93cfc88aa8
2024-05-08 12:53:24 +02:00
Ricardo Wurmus b7419a5ff5
gnu: r-mmuphin: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.18.0.

Change-Id: I71b37e4f6a5393cd7b350fefa169fdf50c055673
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 0f31eb0546
gnu: r-mfuzz: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-mfuzz): Update to 2.64.0.

Change-Id: Idaffd1df4a9a48181cb724d69eac26cd4fe6fdc6
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 90025fcdd9
gnu: r-methylkit: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.30.0.

Change-Id: I0004c3878192ac3ca5e7671c8cdd475214dcdf1e
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 5243f41783
gnu: r-methylaid: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-methylaid): Update to 1.38.0.

Change-Id: I7313f0d99c9a7089fe39aae2798d990eca991583
2024-05-08 12:53:24 +02:00
Ricardo Wurmus f1bb1608b7
gnu: r-metaneighbor: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.24.0.

Change-Id: I96685ea4835b1a0f4e7683c875a90deb68909c47
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 48020fd3ad
gnu: r-metagenomeseq: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.46.0.

Change-Id: Ie55a3af0fd2fb3389aa79eee67425997be6037c9
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 983174d9ac
gnu: r-metabocoreutils: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-metabocoreutils): Update to 1.12.0.
[propagated-inputs]: Add r-biocparallel.

Change-Id: I813eb21649c200a04e71b0f8831765f8f419fbb1
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 9123f8a7e9
gnu: r-mdqc: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.66.0.

Change-Id: I1b37db994acc66091cb79f08015ae938a1220a0d
2024-05-08 12:53:24 +02:00
Ricardo Wurmus b8e2f249b2
gnu: r-maser: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-maser): Update to 1.22.0.

Change-Id: I88e64d3571fd105d9c52160570ba121db7d7a741
2024-05-08 12:53:24 +02:00
Ricardo Wurmus 331d6c7d3a
gnu: r-manor: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-manor): Update to 1.76.0.

Change-Id: I7d9cb874f02dc0154f3a79e086af9afd9b286271
2024-05-08 12:53:24 +02:00
Ricardo Wurmus c5c343a7c3
gnu: r-makecdfenv: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.80.0.

Change-Id: I8efc1851412352c5b3fc194a7343c910cde7e0dd
2024-05-08 12:53:24 +02:00
Ricardo Wurmus c268d433b8
gnu: r-made4: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-made4): Update to 1.78.0.

Change-Id: Ifd79c7a15515466d14d088ae45775d11e7e3b36b
2024-05-08 12:53:24 +02:00
Ricardo Wurmus d8b6bb9707
gnu: r-maaslin2: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.18.0.

Change-Id: I73d0c755e83fd7c3da4e3198884a708cc1c0b3bf
2024-05-08 12:53:24 +02:00