a66642f744
gnu: cdrkit-libre: Fix cross-compiling.
...
* gnu/packages/cdrom.scm (cdrkit-libre)[source]: Add patch.
* gnu/packages/patches/cdrkit-libre-cross-compile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-12-10 12:57:35 +02:00
af5fa4d202
gnu: Add ccwl.
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* gnu/packages/bioinformatics.scm (ccwl): New variable.
2021-12-10 15:26:59 +05:30
8908c82bf9
gnu: dosfstools: Fix cross-compilation.
...
Reported by Florian Hoertlehner.
* gnu/packages/disk.scm (dosfstools)[arguments]: Correctly refer to the
build output. Use cc-for-target.
2021-12-10 10:58:56 +02:00
549aa66e46
gnu: notmuch: Update to 0.34.2.
...
* gnu/packages/mail.scm (notmuch): Update to 0.34.2.
2021-12-10 09:01:59 +01:00
c0b6036247
gnu: emacs-which-key: Update to 3.5.4.
...
* gnu/packages/emacs-xyz.scm (emacs-which-key): Update to 3.5.4.
2021-12-10 08:55:50 +01:00
4199725ac8
gnu: emacs-ebib: Update to 2.34.
...
* gnu/packages/emacs-xyz.scm (emacs-ebib): Update to 2.34.
2021-12-10 08:54:21 +01:00
e1973ae74b
gnu: gajim: Fix typo.
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* gnu/packages/messaging.scm (gajim)[arguments]: Add missing brackets.
All typos are my own.
2021-12-10 04:54:06 +01:00
4bf8348ff3
gnu: gajim: Restore 'disable-failing-tests phase.
...
Gajim consistently builds on my machines & bayfront, whilst
raghavgururajan reports the exact same derivation consistently failing
with the commented error. Odd.
* gnu/packages/messaging.scm (gajim)[arguments]: Restore the old
'disable-failing-tests phase.
2021-12-10 04:48:29 +01:00
1825e45484
gnu: gpxsee: Update to 10.0.
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* gnu/packages/gps.scm (gpxsee): Update to 10.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:45:53 +01:00
2fa1bcd971
gnu: nnn: Update to 4.4.
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* gnu/packages/admin.scm (nnn): Update to 4.4.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:44:01 +01:00
603d51829f
gnu: emacs-parsebib: Update to 3.1.
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* gnu/packages/emacs-xyz.scm (emacs-parsebib): Update to 3.1.
2021-12-10 00:33:53 +01:00
3d90a81313
gnu: rosegarden: Update to 21.12.
...
* gnu/packages/music.scm (rosegarden): Update to 21.12.
2021-12-10 00:32:12 +01:00
a3cb34f7c5
gnu: pyzo: Update to 4.11.7.
...
* gnu/packages/python-xyz.scm (pyzo): Update to 4.11.7.
2021-12-10 00:28:45 +01:00
2f2b4a0f81
gnu: Add rust-spotify-tui-0.25.
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* gnu/packages/crates-io.scm (rust-spotify-tui-0.25): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:29 +01:00
f15b6ae03a
gnu: rust-arboard-1: Update to 1.2.1.
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* gnu/packages/crates-io.scm (rust-arboard-1): Update to 1.2.1.
[arguments](cargo-inputs): Add rust-env-logger-0.8, rust-simple-logger-1,
rust-wl-clipboard-rs-0.4 and rust-x11rb-0.8. Remove rust-xcb-0.9.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:28 +01:00
04cb4fcb5e
gnu: Add rust-wl-clipboard-rs-0.4.
...
* gnu/packages/crates-io.scm (rust-wl-clipboard-rs-0.4): New variable.
* gnu/packages/patches/rust-wl-clipboard-rs-newer-wl.patch: New file.
* gnu/local.mk: Add patch.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:28 +01:00
cf42c98929
gnu: Add rust-stderrlog-0.4.
...
* gnu/packages/crates-io.scm (rust-stderrlog-0.4): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:27 +01:00
cbd745912c
gnu: Add rust-thread-local-0.3.4.
...
* gnu/packages/crates-io.scm (rust-thread-local-0.3.4): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:27 +01:00
fe8f7651d1
gnu: Add rust-simple-logger-1.
...
* gnu/packages/crates-io.scm (rust-simple-logger-1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:26 +01:00
149dd92888
gnu: Add rust-atty-0.2.11.
...
* gnu/packages/crates-io.scm (rust-atty-0.2.11): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:26 +01:00
1c7305adff
gnu: rust-anyhow-1: Update to 1.0.46.
...
* gnu/packages/crates-io.scm (rust-anyhow-1): Update to 1.0.46.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:26 +01:00
bff2009149
gnu: Add rust-tree-magic-0.2.
...
* gnu/packages/crates-io.scm (rust-tree-magic-0.2): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:25 +01:00
35cba1790f
gnu: Add rust-x11rb-0.8.
...
* gnu/packages/crates-graphics.scm (rust-x11rb-0.8): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:25 +01:00
f6f285270a
gnu: Add rust-winapi-wsapoll-0.1.
...
* gnu/packages/crates-io.scm (rust-winapi-wsapoll-0.1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:24 +01:00
4f38c1f57e
gnu: Add rust-rspotify-0.10.
...
* gnu/packages/crates-io.scm (rust-rspotify-0.10): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:24 +01:00
76eadbeb89
gnu: Add rust-derive-builder-0.7.
...
* gnu/packages/crates-io.scm (rust-derive-builder-0.7): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:24 +01:00
a4d35d0c78
gnu: Add rust-derive-builder-core-0.5.
...
* gnu/packages/crates-io.scm (rust-derive-builder-core-0.5): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:23 +01:00
39e38804f2
gnu: Add rust-dotenv-0.13
...
* gnu/packages/crates-io.scm (rust-dotenv-0.13): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:23 +01:00
d8c0d955a4
gnu: Add rust-tui-0.16.
...
* gnu/packages/crates-io.scm (rust-tui-0.16): New variable.
(rust-tui-0.15): Inherit from above.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:22 +01:00
ae01172fb3
gnu: Add rust-argh-0.1.
...
* gnu/packages/crates-io.scm (rust-argh-0.1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:22 +01:00
2e625d0b2d
gnu: Add rust-argh-derive-0.1.
...
* gnu/packages/crates-io (rust-argh-derive-0.1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:21 +01:00
dfdcd375a8
gnu: Add rust-argh-shared-0.1.
...
* gnu/packages/crates-io.scm (rust-argh-shared-0.1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-10 00:11:21 +01:00
4665e6a73b
gnu: opam: Update to 2.1.2.
...
* gnu/packages/ocaml.scm (opam): Update to 2.1.2.
2021-12-09 23:59:21 +01:00
77ea796d1b
gnu: pplacer: Fix build.
...
* gnu/packages/bioinformatics.scm (pplacer)[inputs]: Replace gsl with
gsl-static.
* gnu/packages/ocaml.scm (ocaml4.07-gsl-1)[inputs]: Same.
2021-12-09 23:17:26 +02:00
1da7f9089f
gnu: Add gsl-static.
...
* gnu/packages/maths.scm (gsl-static): New variable.
2021-12-09 23:17:26 +02:00
1e81140cb5
gnu: python-dendropy: Skip additional test.
...
* gnu/packages/bioinformatics.scm (python-dendropy)[arguments]: Adjust
custom 'skip-broken-tests phase to skip additional test.
2021-12-09 22:43:42 +02:00
13bc332ed5
gnu: mumi: Update to 0.0.1-6.8a45281.
...
* gnu/packages/mail.scm (mumi): Update to 0.0.1-6.8a45281.
[arguments]: Remove trailing #T.
2021-12-09 19:17:22 +01:00
0e8826824c
gnu: python-rich: Remove optional input ipywidgets.
...
* gnu/packages/python-xyz.scm (python-rich)[propagated-inputs]: Remove
python-ipywidgets.
2021-12-09 19:17:21 +01:00
4709decb45
gnu: r-minimal: Remove extraneous references.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Remove references to
native build-time tools.
2021-12-09 19:17:16 +01:00
d974b3f860
gnu: uBlock Origin: Update to 1.39.2.
...
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.39.2.
2021-12-09 17:39:29 +01:00
4cb5f0daf2
gnu: ungoogled-chromium: Update to 96.0.4664.93-1.
...
* gnu/packages/chromium.scm (%chromium-version): Set to 96.0.4664.93.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2021-12-09 17:39:29 +01:00
f0cc0e8f30
gnu: imp: Build with default cmake.
...
* gnu/packages/bioinformatics.scm (imp)[arguments]: Remove cmake flag.
2021-12-09 14:39:22 +02:00
2648d3207f
gnu: repeat-masker: Update to 4.1.2-p1.
...
* gnu/packages/bioinformatics.scm (repeat-masker): Update to 4.1.2-p1.
2021-12-09 12:10:18 +01:00
0bf3c9abaa
gnu: metabat: Update to 2.15.
...
* gnu/packages/bioinformatics.scm (metabat): Update to 2.15.
[source]: Remove patch.
[build-system]: Use cmake-build-system.
[arguments]: Adjust to new build system.
* gnu/packages/patches/metabat-fix-compilation.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-09 11:50:10 +01:00
ab445eb4b7
gnu: python2-scikit-learn: Disable one more test.
...
* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]: Do not
inherit; remove obsolete 'make-files-writable phase; disable one more failing
test in 'check phase.
2021-12-09 11:17:45 +01:00
1c7914009a
gnu: seek: Update to 1-1.196ed4c.
...
* gnu/packages/bioinformatics.scm (seek): Update to 1-1.196ed4c.
[source]: Fetch from github.
[build-system]: Use cmake-build-system.
[arguments]: Remove all custom phases; replace 'check phase; disable tests;
set configure flags.
[inputs]: Add apache-thrift:include, apache-thrift:lib, and python.
[native-inputs]: Remove autoconf, automake, and perl; add pkg-config.
2021-12-09 11:17:45 +01:00
4fb363c906
gnu: libsvm: Install header and library.
...
* gnu/packages/machine-learning.scm (libsvm)[arguments]: Add build phase
'build-lib; also install header file and shared library in the 'install phase.
2021-12-09 11:17:45 +01:00
26e26bc819
gnu: miso: Update to 0.5.4-1.b714021.
...
* gnu/packages/bioinformatics.scm (miso): Update to 0.5.4-1.b714021.
[source]: Fetch via git; simplify snippet.
[inputs]: Replace samtools with samtools-1.2.
[home-page]: Update to new location.
2021-12-09 11:17:45 +01:00
0b8a75cc3a
gnu: Add samtools-1.2.
...
* gnu/packages/bioinformatics.scm (samtools-1.2): New variable.
2021-12-09 11:17:45 +01:00
f505f588a7
gnu: Add htslib-for-samtools-1.2.
...
* gnu/packages/bioinformatics.scm (htslib-for-samtools-1.2): New variable.
2021-12-09 11:17:45 +01:00
Efraim Flashner
Arun Isaac
Nicolas Goaziou
Tobias Geerinckx-Rice
Nikolay Korotkiy
Petr Hodina
Julien Lepiller
Ricardo Wurmus
Marius Bakke