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Author SHA1 Message Date
Tobias Geerinckx-Rice
20b5b97381
gnu: python-rpy2: Update to 2.9.4. 
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
 2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice
db09a450d2
gnu: python-rpy2: Update home page. 
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice
52773e5cf4
gnu: python-py: Use HTTPS home page. 
* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
 2018-08-20 16:36:20 +02:00
Marius Bakke
df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Marius Bakke
37d203985e
gnu: python-cython: Disable tests that fail on armhf. 
* gnu/packages/python.scm (python-cython)[arguments]: On armhf-linux, add
phase to disable two tests.
 2018-08-16 20:33:28 +02:00
Ricardo Wurmus
e9e9783e0a
gnu: Add python-argparse-manpage. 
* gnu/packages/python.scm (python-argparse-manpage): New variable.
 2018-08-16 17:04:10 +02:00
Tobias Geerinckx-Rice
a1c86d1db4
gnu: python-txamqp: Update to 0.8.2. 
* gnu/packages/python.scm (python-txamqp): Update to 0.8.2.
 2018-08-15 20:10:22 +02:00
Ricardo Wurmus
b86c019efb
Merge branch 'staging' into core-updates 2018-08-13 20:39:32 +02:00
Tobias Geerinckx-Rice
247d4e7271
gnu: python-pep8: Use HTTPS home page. 
Also add a comment about 1.7.1. This doesn't warrant a changelog entry,
so you never read this.

* gnu/packages/python.scm (python-pep8)[home-page]: Use HTTPS.
 2018-08-13 01:51:47 +02:00
Ricardo Wurmus
bc731eada6
gnu: python-flake8: Fix build. 
* gnu/packages/python.scm (python-flake8)[arguments]: Add build phases
"delete-broken-test" and "fix-problem-with-pycodestyle".
[propagated-inputs]: Remove python-setuptools.
 2018-08-08 23:10:26 +02:00
Ricardo Wurmus
5417c92877
gnu: python-flake8: Use INVOKE. 
* gnu/packages/python.scm (python-flake8)[arguments]: Use INVOKE and always
return #T.
 2018-08-08 23:10:19 +02:00
Ricardo Wurmus
2df4ecd61d
gnu: python-dbus: Update to 1.2.8. 
* gnu/packages/python.scm (python-dbus): Update to 1.2.8.
[inputs]: Replace "python" with "python-wrapper".
 2018-08-08 22:08:39 +02:00
Ricardo Wurmus
cfe62fb22b
gnu: python-cython: Remove failing test. 
* gnu/packages/python.scm (python-cython)[arguments]: Remove failing test.
 2018-08-08 22:08:32 +02:00
Leo Famulari
ccdc1690bd
gnu: Cython: Update to 0.28.4. 
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.28.4.
[arguments]: Use invoke.
 2018-08-08 22:08:24 +02:00
Marius Bakke
6af7c2b178
Merge branch 'master' into staging 2018-08-07 00:50:25 +02:00
Ricardo Wurmus
0fb0db0022
gnu: python-scipy: Only run default tests. 
* gnu/packages/python.scm (python-scipy)[arguments]: Only run the default test
suite.  The full test suite is too expensive and brittle.
 2018-08-03 15:24:40 +02:00
Marius Bakke
4214066d45
Merge branch 'master' into core-updates 2018-08-01 15:53:17 +02:00
Marius Bakke
869250809b
Merge branch 'master' into staging 2018-07-30 18:08:28 +02:00
Christopher Baines
6465497fb9
gnu: Remove duplicated python-pafy. 
It was first added in 02f8f804f0, then again in
2dd12924cf.

* gnu/packages/python.scm (python-pafy): Remove duplicated package definition.
 2018-07-29 17:57:53 +01:00
Marius Bakke
20b0aaf986
gnu: python-fonttools: Update license. 
This is a follow-up to commit 4696368108.

* gnu/packages/python.scm (python-fonttools)[license]: Change to EXPAT (since 3.21).
 2018-07-28 23:37:52 +02:00
Efraim Flashner
a4b7a1cb4a
gnu: python-3.7: Update deleted tests. 
* gnu/packages/python.scm (python-3.7)[source]: Update the list of files
to be deleted in the snippet.
 2018-07-28 21:56:28 +03:00
Marius Bakke
1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Marius Bakke
4696368108
gnu: python-fonttools: Update to 3.28.0. 
* gnu/packages/python.scm (python-fonttools): Update to 3.28.0.
[arguments]: Remove.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
 2018-07-28 15:52:30 +02:00
Marius Bakke
1166b9c795
gnu: Add python-invoke. 
* gnu/packages/python.scm (python-invoke, python2-invoke): New public variables.
 2018-07-28 15:52:29 +02:00
Marius Bakke
153812ee0d
gnu: python-flake8: Update to 3.5.0. 
* gnu/packages/python.scm (python-flake8): Update to 3.5.0.
 2018-07-28 15:52:28 +02:00
Marius Bakke
d0205dfd92
gnu: python-setuptools: Update to 40.0.0. 
* gnu/packages/python.scm (python-setuptools): Update to 40.0.0.
[source](uri): Adjust to zipball archive.
 2018-07-28 15:52:28 +02:00
Marius Bakke
fdf5344a23
gnu: python-pycodestyle: Update to 2.4.0. 
* gnu/packages/python.scm (python-pycodestyle): Update to 2.4.0.
 2018-07-28 15:52:28 +02:00
Marius Bakke
9e7d6e818c
gnu: python-more-itertools: Update to 4.2.0. 
* gnu/packages/python.scm (python-more-itertools): Update to 4.2.0.
 2018-07-28 15:52:27 +02:00
Marius Bakke
e8e7cd12c7
gnu: python-pyflakes: Update to 2.0.0. 
* gnu/packages/python.scm (python-pyflakes): Update to 2.0.0.
 2018-07-28 15:52:27 +02:00
Marius Bakke
3765c9c95b
gnu: python-py: Update home page. 
* gnu/packages/python.scm (python-py)[home-page]: Change to repository URL.
 2018-07-28 15:52:27 +02:00
Marius Bakke
a0d77eba72
gnu: python-py: Update to 1.5.4. 
* gnu/packages/python.scm (python-py): Update to 1.5.4.
 2018-07-28 15:52:27 +02:00
Marius Bakke
bc46a45ae7
gnu: python-py: Add missing dependency on setuptools-scm. 
* gnu/packages/python.scm (python-py)[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
 2018-07-28 15:52:26 +02:00
Marius Bakke
a422e2478e
gnu: python: Build reproducibly. 
\o/

* gnu/packages/python.scm (python-3.7)[arguments]: Set PYTHONHASHSEED before
rebuilding all bytecode.  Adjust regex so that lib2to3_ex.py gets compiled.
 2018-07-28 15:52:26 +02:00
Marius Bakke
81d967075e
gnu: python: Rebuild bytecode after removing tests. 
* gnu/packages/python.scm (python-3.7)[arguments]: Run 'rebuild-bytecode'
after 'remove-tests' to save CPU cycles.  Adjust exclude regex.
 2018-07-28 15:52:26 +02:00
Marius Bakke
a1454169e0
gnu: python: Update to 3.7.0. 
* gnu/packages/python.scm (python-3.6): Rename to ...
(python-3.7): ... this.  Update to 3.7.0.
[arguments]: Remove phase 'patch-timestamp-for-pyc-files' and related code.
Add phases to unset SOURCE_DATE_EPOCH during the check phase.
(python-3): Is now PYTHON-3.7.
* guix/build/python-build-system.scm (enable-bytecode-determinism): Don't set
DETERMINISTIC_BUILD.
 2018-07-28 15:52:26 +02:00
Marius Bakke
d66146073d
gnu: python: Remove outdated comment and phases. 
* gnu/packages/python.scm (python-2.7)[arguments]: Don't set SOURCE_DATE_EPOCH
or make libraries writable, since those are handled by gnu-build-system.
(python-3.6): Don't override :#tests?.
 2018-07-28 15:52:25 +02:00
Ricardo Wurmus
ed2dfe3955
gnu: Add snakemake-4. 
* gnu/packages/python.scm (snakemake-4): New variable.
* gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq,
pigx-chipseq)[inputs]: Use it.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus
269f100330
gnu: snakemake: Add missing dependencies. 
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie,
python-docutils, python-jinja2, python-jsonschema, and python-networkx.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus
216a72a957
gnu: Add python-datrie. 
* gnu/packages/python.scm (python-datrie): New variable.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus
b62715aa82
gnu: snakemake: Update to 5.2.0. 
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
 2018-07-27 14:19:43 +02:00
Marius Bakke
706ae8e15c
Merge branch 'master' into core-updates 2018-07-24 19:56:35 +02:00
Leo Famulari
c69d11c593
gnu: Cython: Update to 0.28.4. 
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.28.4.
[arguments]: Use invoke.
 2018-07-19 18:28:29 -04:00
Danny Milosavljevic
a545090ce5
gnu: python-cairocffi: Fix loading of shared libraries. 
Fixes <https://bugs.gnu.org/32170>.

* gnu/packages/patches/python-cairocffi-dlopen-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-cairocffi)[inputs]: Add glib, gtk+, pango.
[native-inputs]: Add python-pytest.
[arguments]: Enable tests.
[arguments]<#:phases>[patch-paths]: New phase.
 2018-07-16 23:51:38 +02:00
Leo Famulari
8e632a6435
gnu: python-pyasn1-modules: Update to 0.2.2. 
* gnu/packages/python.scm (python-pyasn1-modules, python2-pyasn1-modules):
Update to 0.2.2.
 2018-07-16 16:47:55 -04:00
Leo Famulari
90f38fb661
gnu: python-pyasn1: Update to 0.4.3. 
* gnu/packages/python.scm (python-pyasn1, python2-pyasn1): Update to 0.4.3.
 2018-07-16 16:47:52 -04:00
Efraim Flashner
6c10675928
gnu: python-xenon: Update to 0.5.4. 
* gnu/packages/python.scm (python-xenon): Update to 0.5.4.
[arguments]: Remove part of custom 'patch-test-requirements phase.
 2018-07-14 23:19:42 +03:00
Ben Woodcroft
5908818e30
gnu: python-h5py: Update to 2.8.0. 
* gnu/packages/python.scm (python-h5py): Update to 2.8.0.
 2018-07-15 00:43:57 +10:00
Marius Bakke
49b6dc2b4e
Merge branch 'staging' 2018-07-13 00:25:45 +02:00
Marius Bakke
250276a202
gnu: python-pyyaml: Update to 3.13. 
* gnu/packages/python.scm (python-pyyaml): Update to 3.13.
 2018-07-12 17:21:15 +02:00
Marius Bakke
873325b030
Merge branch 'master' into staging 2018-07-08 23:58:22 +02:00