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113970 Commits (15efeebe536949b4f2fd6f74c54989c16b17dca7)

Author SHA1 Message Date
Ricardo Wurmus 83b381a95b
gnu: r-annotationhub: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.8.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus f6c878674f
gnu: r-annotationforge: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus aa97ff9c34
gnu: r-annotationfilter: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.24.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 46ff186f73
gnu: r-annotationdbi: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus d9d1b77c84
gnu: r-annotate: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.78.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 4f2c3411ec
gnu: r-affxparser: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.72.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 1b4dd53a4f
gnu: r-affyio: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.70.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 5d8d8c2256
gnu: r-affycoretools: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.72.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus a7485d9850
gnu: r-affycontam: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.58.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus b121b78bda
gnu: r-affycomp: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 6a19dd1e21
gnu: r-affy: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 21b305edbe
gnu: r-italics: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-italics): Update to 2.60.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 669d0d17da
gnu: r-isoformswitchanalyzer: Update to 1.21.0. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.21.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus a0846151b3
gnu: r-iranges: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 116bc67509
gnu: r-infercnv: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.16.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 09260401c4
gnu: r-ideoviz: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.36.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus e057271297
gnu: r-bluster: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.10.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 0ef0e70d81
gnu: r-dss: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-dss): Update to 2.48.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 72bfb25766
gnu: r-drimseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.28.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus c901f7c4f3
gnu: r-dmrcate: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.14.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus b23aac21d5
gnu: r-derfinderhelper: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.34.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus b7b1423882
gnu: r-delayedarray: Update to 0.25.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.25.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus c179c05e35
gnu: r-deepsnv: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.46.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 57bb01b808
gnu: r-decoupler: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.6.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 28b2d8a1e3
gnu: r-deconvr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.6.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 228c0fae2b
gnu: r-decontam: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.20.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 37a7539db3
gnu: r-deconrnaseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.42.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 8ccd86a17b
gnu: r-decomptumor2sig: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.16.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus c9794ffe59
gnu: r-decipher: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.28.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 52e738d346
gnu: r-debcam: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.18.0.
[source]: Delete bundled Java archives.
[arguments]: Add phase 'build-jar; add phase 'strip-jar-timestamps; do a fake
installation and disable tests due to a regression in R 4.3.0.
[inputs]: Replace openjdk with icedtea:jdk; add java-pj.
[native-inputs]: Add zip.
 2023-04-29 20:27:17 +02:00
Ricardo Wurmus 2bf6f659c4
gnu: Add java-pj. 
* gnu/packages/java.scm (java-pj): New variable.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 4837210129
gnu: r-dearseq: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.12.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 8f93a53a4c
gnu: r-damefinder: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.12.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 01ba2a24d2
gnu: r-dama: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-dama): Update to 1.72.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 9b305554a3
gnu: r-cummerbund: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.42.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 6233b26d1d
gnu: r-coverageview: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.38.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus f869abfae3
gnu: r-cardelino: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.2.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 084e990d2f
gnu: r-breakpointr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.18.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus cb191936d8
gnu: r-biocgenerics: Update to 0.46.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.46.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 3b302bdf35
gnu: r-biocversion: Update to 3.17.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.17.1.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus ae85652e4b
gnu: r-barcodetrackr: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.8.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 41bff44b32
gnu: r-banocc: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.24.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus c6d14bd6fb
gnu: r-bandits: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 7bce4cdacb
gnu: r-bambu: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 4f4d38cc4d
gnu: r-badregionfinder: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.28.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus e10c8fe41a
gnu: r-bader: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bader): Update to 1.38.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus ff5191816e
gnu: r-basespacer: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.44.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus bc466e59b8
gnu: r-baalchip: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.26.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus 14191d89a7
gnu: r-awst: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-awst): Update to 1.8.0.
 2023-04-29 20:09:32 +02:00
Ricardo Wurmus d12336de7d
gnu: r-awfisher: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.14.0.
 2023-04-29 20:09:32 +02:00