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967 Commits (171abdd8f5194af0a141c2f5e2d542c3c89a00b0)

Author SHA1 Message Date
Ricardo Wurmus 0b8c7e4bb5
gnu: Add r-m3c. 
* gnu/packages/bioconductor.scm (r-m3c): New variable.
 2020-08-11 11:27:06 +02:00
Tobias Geerinckx-Rice 702a101257
gnu: Use HTTPS for github.com (and subdomains) home pages. 
* gnu/packages/bioconductor.scm (r-qvalue)[home-page]: Use HTTPS and
follow permanent redirection.
* gnu/packages/check.scm (python-codecov, python-nosexcover)
[home-page]: Likewise.
* gnu/packages/cran.scm (r-ffbase, r-ggrepel, r-valr)
[home-page]: Likewise.
* gnu/packages/crates-io.scm (rust-block-0.1, rust-dispatch-0.1)
(rust-objc-0.2, rust-objc-exception-0.1)
(rust-objc-foundation-0.1, rust-objc-id-0.1, rust-objc-test-utils-0.0)
(rust-onig-5.0, rust-onig-sys-69.2, rust-vergen-3.1)
[home-page]: Likewise.
* gnu/packages/finance.scm (ledger-agent, keepkey-agent)
[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-tasty-expected-failure)
[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-bsb-http-chunked, ghc-warp)
(ghc-warp-tls)[home-page]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-configurator, ghc-hasktags)
(ghc-linear, ghc-newtype-generics, ghc-retry, ghc-xdg-basedir)
(ghc-pretty-show)[home-page]: Likewise.
* gnu/packages/java.scm (java-javax-inject)[home-page]: Likewise.
* gnu/packages/libffi.scm (ruby-ffi)[home-page]: Likewise.
* gnu/packages/linux.scm (procenv)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-aiodns, python-flask-htpasswd)
(python-pycares)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-progressbar33, python-whatever)
(python-funcy)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-rubyzip, ruby-spinach, ruby-gherkin-ruby)
(ruby-code-statistics, ruby-colorize, ruby-wwtd)[home-page]: Likewise.
 2020-07-16 20:12:06 +02:00
Ricardo Wurmus a9a912805a
gnu: r-activepathways: Update to 1.0.2. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.2.
[propagated-inputs]: Remove r-metap.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 1a7d1c54d4
gnu: r-rsubread: Update to 2.2.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.4.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus 2d9c897dd0
gnu: r-variancepartition: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.2.
 2020-07-16 10:08:03 +02:00
Ludovic Courtès b0e7b6992f
gnu: Remove ".git" from "https://github/…/….git". 
Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix
swh) would sometimes return #f for these because the ".git" URLs are
redirects to the non-".git" URLs.  Consequently, 'guix lint -c archival'
would keep saying "scheduled Software Heritage archival"; likewise, the
fallback download code would fail.

* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/aidc.scm,
gnu/packages/algebra.scm,
gnu/packages/android.scm,
gnu/packages/animation.scm,
gnu/packages/arcan.scm,
gnu/packages/assembly.scm,
gnu/packages/audio.scm,
gnu/packages/authentication.scm,
gnu/packages/avr.scm,
gnu/packages/axoloti.scm,
gnu/packages/backup.scm,
gnu/packages/bash.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioconductor.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/boost.scm,
gnu/packages/build-tools.scm,
gnu/packages/c.scm,
gnu/packages/calendar.scm,
gnu/packages/cdrom.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/chez.scm,
gnu/packages/clojure.scm,
gnu/packages/code.scm,
gnu/packages/compression.scm,
gnu/packages/compton.scm,
gnu/packages/coq.scm,
gnu/packages/cpp.scm,
gnu/packages/cran.scm,
gnu/packages/crypto.scm,
gnu/packages/curl.scm,
gnu/packages/databases.scm,
gnu/packages/datastructures.scm,
gnu/packages/debug.scm,
gnu/packages/disk.scm,
gnu/packages/distributed.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/dns.scm,
gnu/packages/docker.scm,
gnu/packages/education.scm,
gnu/packages/efi.scm,
gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm,
gnu/packages/embedded.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/erlang.scm,
gnu/packages/fabric-management.scm,
gnu/packages/file-systems.scm,
gnu/packages/finance.scm,
gnu/packages/firmware.scm,
gnu/packages/flashing-tools.scm,
gnu/packages/fonts.scm,
gnu/packages/fontutils.scm,
gnu/packages/fpga.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/genealogy.scm,
gnu/packages/genimage.scm,
gnu/packages/geo.scm,
gnu/packages/gimp.scm,
gnu/packages/gl.scm,
gnu/packages/gnome-xyz.scm,
gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/golang.scm,
gnu/packages/gpodder.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/groff.scm,
gnu/packages/groovy.scm,
gnu/packages/gtk.scm,
gnu/packages/guile-xyz.scm,
gnu/packages/guile.scm,
gnu/packages/hardware.scm,
gnu/packages/haskell-apps.scm,
gnu/packages/haskell-xyz.scm,
gnu/packages/hexedit.scm,
gnu/packages/i2p.scm,
gnu/packages/ibus.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/ipfs.scm,
gnu/packages/java-graphics.scm,
gnu/packages/java-maths.scm,
gnu/packages/java.scm,
gnu/packages/javascript.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/jupyter.scm,
gnu/packages/kodi.scm,
gnu/packages/language.scm,
gnu/packages/lego.scm,
gnu/packages/less.scm,
gnu/packages/libusb.scm,
gnu/packages/linux.scm,
gnu/packages/lirc.scm,
gnu/packages/lisp-xyz.scm,
gnu/packages/llvm.scm,
gnu/packages/logging.scm,
gnu/packages/lolcode.scm,
gnu/packages/lua.scm,
gnu/packages/lxde.scm,
gnu/packages/lxqt.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/markup.scm,
gnu/packages/maths.scm,
gnu/packages/maven.scm,
gnu/packages/mes.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/node-xyz.scm,
gnu/packages/ocaml.scm,
gnu/packages/ocr.scm,
gnu/packages/onc-rpc.scm,
gnu/packages/opencl.scm,
gnu/packages/opencog.scm,
gnu/packages/pantheon.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/perl6.scm,
gnu/packages/phabricator.scm,
gnu/packages/popt.scm,
gnu/packages/printers.scm,
gnu/packages/prolog.scm,
gnu/packages/protobuf.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/python-xyz.scm,
gnu/packages/qt.scm,
gnu/packages/radio.scm,
gnu/packages/rails.scm,
gnu/packages/rdf.scm,
gnu/packages/rednotebook.scm,
gnu/packages/rpc.scm,
gnu/packages/rsync.scm,
gnu/packages/ruby.scm,
gnu/packages/rust.scm,
gnu/packages/scheme.scm,
gnu/packages/screen.scm,
gnu/packages/security-token.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/shellutils.scm,
gnu/packages/simh.scm,
gnu/packages/sml.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/stenography.scm,
gnu/packages/sync.scm,
gnu/packages/syncthing.scm,
gnu/packages/synergy.scm,
gnu/packages/telephony.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tmux.scm,
gnu/packages/tor.scm,
gnu/packages/toys.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/vim.scm,
gnu/packages/virtualization.scm,
gnu/packages/vlang.scm,
gnu/packages/vnc.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wireservice.scm,
gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm,
tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
 2020-07-12 23:08:15 +02:00
Ricardo Wurmus 54e04fed9c
gnu: r-depecher: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.1.
 2020-07-04 11:52:33 +02:00
Ricardo Wurmus c535717b6a
gnu: r-rsubread: Update to 2.2.3. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.3.
 2020-07-04 11:52:33 +02:00
Ricardo Wurmus c89afe7516
gnu: Add r-rgreat. 
* gnu/packages/bioconductor.scm (r-rgreat): New variable.
 2020-06-22 14:39:03 +02:00
Ricardo Wurmus f7d5721bc2
gnu: r-gdsfmt: Update to 1.24.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 1893092d58
gnu: r-cicero: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1.
[propagated-inputs]: Add r-stringi.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus ef58875705
gnu: r-cytoml: Update to 2.0.5. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5.
[propagated-inputs]: Add r-xml2.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 015ff0bf18
gnu: r-wiggleplotr: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 8c06ce3c22
gnu: r-regioner: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1.
 2020-06-22 12:15:49 +02:00
Ricardo Wurmus 214ee82742
gnu: r-flowworkspace: Update to 4.0.6. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.6.
 2020-06-14 09:13:22 +02:00
Ricardo Wurmus 9bc516bada
gnu: Add r-pcatools. 
* gnu/packages/bioconductor.scm (r-pcatools): New variable.
 2020-06-13 22:35:29 +02:00
Ricardo Wurmus 6b9e3b92c4
gnu: r-biodist: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.60.0.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 6a88291d1a
gnu: r-biocworkflowtools: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.14.0.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 723fa00d11
gnu: r-biocset: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus 1759a13d6e
gnu: r-biocpkgtools: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.6.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 132abe5fcc
gnu: r-biocor: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 1c51821593
gnu: r-bioconcotk: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 4091eae2bc
gnu: r-multiassayexperiment: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.14.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus b56a3462ad
gnu: r-experimenthub: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 543c63f2ae
gnu: r-biocgraph: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.50.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 8b71b14158
gnu: r-bioccasestudies: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.50.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus a74a427bd8
gnu: r-ebarrays: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.52.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus affb4ab351
gnu: r-reactomepa: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.32.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 29b1702799
gnu: r-graphite: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.34.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus e09ca033f4
gnu: r-biobroom: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus c8cbde9ff6
gnu: r-bioassayr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.26.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus 06908a73fc
gnu: r-chemminer: Update to 3.40.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.40.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus d0badcc180
gnu: r-bigpint: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.4.0.
[propagated-inputs]: Add r-delayedarray and r-summarizedexperiment.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus eef9c99cd8
gnu: r-bigmemoryextras: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus f31edb0191
gnu: r-biggr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.24.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 3116998610
gnu: r-hyperdraw: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.40.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 0ff724616b
gnu: r-hypergraph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.60.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus d65bdbb2cb
gnu: r-rsbml: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.46.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus a54fd40994
gnu: r-bifet: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 7642517336
gnu: r-bicare: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.46.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 2415576ecb
gnu: r-bhc: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.40.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus de91f15a74
gnu: r-bgx: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.54.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 296992be08
gnu: r-bgmix: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.48.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus a9148d0686
gnu: r-unifiedwmwqpcr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.24.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus 518050a75b
gnu: r-htqpcr: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.42.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus fbbaf5ae64
gnu: r-variancepartition: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 41f7fe4aa9
gnu: r-variantfiltering: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.24.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 49dd504192
gnu: r-timeseriesexperiment: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 12b255f213
gnu: r-wavcluster: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus efb44ebca4
gnu: r-reqon: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.34.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 83b7625cae
gnu: r-seqbias: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.36.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 8112796db1
gnu: r-bigmelon: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.14.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus f4954b0b57
gnu: r-gdsfmt: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus 939ace9624
gnu: r-watermelon: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.32.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus cad8a5099a
gnu: r-roc: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.64.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus b32808831c
gnu: r-genie3: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus e677c9b501
gnu: r-cicero: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 93235b1eb3
gnu: r-rcistarget: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus af66e35d31
gnu: r-depecher: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 7bec32fe53
gnu: r-mixomics: Update to 6.12.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.1.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 32bd0295c8
gnu: r-flowsom: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.20.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 8d5a83b7c6
gnu: r-cytoml: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.0.
[propagated-inputs]: Remove r-ncdfflow; add r-rcpparmadillo, r-rhdf5lib, and
r-tibble.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 8f5e16742d
gnu: r-opencyto: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.0.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 372caae6a9
gnu: r-flowstats: Update to 4.0.0. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.0.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus a9af09df17
gnu: r-flowworkspace: Update to 4.0.3. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.3.
[propagated-inputs]: Remove r-flowviz, r-gridextra, and r-rcolorbrewer; add
r-ggplot2, r-rcpparmadillo, r-rhdf5lib, and r-xml.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus bafade83c1
gnu: r-rprotobuflib: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.0.0.
[arguments]: Adjust phase "unpack-bundled-sources".
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus b347d6c32b
gnu: r-flowclust: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.26.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 062789b87a
gnu: r-flowviz: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.52.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 3407dfa61f
gnu: r-ggcyto: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.16.0.
[propagated-inputs]: Add r-hexbin.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus 631b12ca71
gnu: r-ncdfflow: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.34.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 76b163d616
gnu: r-flowmeans: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.48.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus faff2de0da
gnu: r-flowcore: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.0.1.
[propagated-inputs]: Add r-rcpparmadillo and r-rprotobuflib.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 3c73d7c5e4
gnu: r-cytolib: Update to 2.0.3. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.0.3.
[inputs]: Add zlib.
[propagated-inputs]: Add r-bh, r-rcpp, r-rcpparmadillo, r-rcppparallel,
r-rhdf5lib, and r-rprotobuflib.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 0c2573e7f1
gnu: r-consensusclusterplus: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.52.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 6954950f4a
gnu: r-flowutils: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.52.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 5d63f69be9
gnu: r-rsubread: Update to 2.2.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.2.
[propagated-inputs]: Add r-matrix.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 5ca991bff9
gnu: r-annotatr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 8b6f26e634
gnu: r-biosigner: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.16.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 77334168cf
gnu: r-ropls: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.20.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus 905bbb13da
gnu: r-multidataset: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus cb941ca06d
gnu: r-birta: Update to 1.31.0. 
* gnu/packages/bioconductor.scm (r-birta): Update to 1.31.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus f50609aba5
gnu: r-birewire: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.20.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 1c5360ac3d
gnu: r-rqc: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus a84abf434d
gnu: r-quasr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 2aff2724ef
gnu: r-rhisat2: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 201902bc05
gnu: r-sgseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 568c3929b6
gnu: r-rbowtie: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus ca8d80c90c
gnu: r-iclusterplus: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.24.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 173844fc75
gnu: r-biocfilecache: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 989b7bb625
gnu: r-arrmnormalization: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.28.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8e5933a8e4
gnu: r-progeny: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.10.0.
[propagated-inputs]: Add r-dplyr, r-ggplot2, r-ggrepel, r-gridextra, and
r-tidyr.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 297854e682
gnu: r-rbowtie2: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8fdca89b56
gnu: r-zfpkm: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 620cc4d976
gnu: r-webbioc: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.60.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus 08c4d31400
gnu: r-widgettools: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.66.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus ee0f746088
gnu: r-wiggleplotr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 996f07b591
gnu: r-wrench: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus ff9f179a0c
gnu: r-xcms: Update to 3.10.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.1.
[propagated-inputs]: Remove r-multtest; add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus 11cf2d7bb7
gnu: r-massspecwavelet: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.54.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus bcd06bdbff
gnu: r-xbseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00