429e687e69
gnu: r-affy: Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-affy): Update to 1.74.0.
2022-05-28 23:19:08 +02:00
a15c457c59
gnu: r-isoformswitchanalyzer: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.18.0.
2022-05-28 23:19:08 +02:00
285b5cb7fa
gnu: r-iranges: Update to 2.30.0.
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* gnu/packages/bioconductor.scm (r-iranges): Update to 2.30.0.
2022-05-28 23:19:07 +02:00
48c3389314
gnu: r-ideoviz: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.32.0.
2022-05-28 23:19:07 +02:00
051b7e63f2
gnu: r-bluster: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-bluster): Update to 1.6.0.
2022-05-28 23:19:07 +02:00
59fff0e2d2
gnu: r-drimseq: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.24.0.
2022-05-28 23:19:07 +02:00
cea1b9029a
gnu: r-derfinderhelper: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.30.0.
2022-05-28 23:19:07 +02:00
a2173119ec
gnu: r-delayedarray: Update to 0.22.0.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.22.0.
2022-05-28 23:19:07 +02:00
d15f46c5cf
gnu: r-deepsnv: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.0.
2022-05-28 23:19:07 +02:00
7149e667c1
gnu: r-decipher: Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-decipher): Update to 2.24.0.
2022-05-28 23:19:07 +02:00
25847e60fe
gnu: r-dearseq: Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.1.
[propagated-inputs]: Add r-compquadform, r-dplyr, r-magrittr, r-reshape2, r-rlang,
r-tibble, and r-viridislite.
[native-inputs]: Add r-knitr.
2022-05-28 23:19:07 +02:00
b0bd7ec471
gnu: r-cummerbund: Update to 2.38.0.
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* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.38.0.
2022-05-28 23:19:07 +02:00
6f0430cdc2
gnu: r-coverageview: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.34.0.
2022-05-28 23:19:06 +02:00
00d51727e5
gnu: r-biocgenerics: Update to 0.42.0.
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* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.42.0.
2022-05-28 23:19:06 +02:00
b19400063e
gnu: r-biocversion: Update to 3.15.2.
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* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.15.2.
2022-05-28 23:19:06 +02:00
75628fc7ce
gnu: r-aneufinder: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.24.0.
2022-05-28 23:19:06 +02:00
5f9a73d665
gnu: r-adductomicsr: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.12.0.
2022-05-28 23:19:06 +02:00
a5e1a37cdf
gnu: r-agilp: Update to 3.28.0.
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* gnu/packages/bioconductor.scm (r-agilp): Update to 3.28.0.
2022-05-28 23:19:06 +02:00
e704ed78b5
gnu: r-aggregatebiovar: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.6.0.
2022-05-28 23:19:06 +02:00
6e1d256151
gnu: r-agdex: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-agdex): Update to 1.44.0.
2022-05-28 23:19:06 +02:00
052d0d283a
gnu: r-affyrnadegradation: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.42.0.
2022-05-28 23:19:06 +02:00
f4a85d5555
gnu: r-affixcan: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.14.0.
2022-05-28 23:19:06 +02:00
3e524e46a0
gnu: r-adsplit: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.66.0.
2022-05-28 23:19:05 +02:00
3a29b78fa9
gnu: r-adimpute: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.6.0.
2022-05-28 23:19:05 +02:00
1d3b5f80e7
gnu: r-adamgui: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.12.0.
2022-05-28 23:19:05 +02:00
69dc67d9aa
gnu: r-adam: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-adam): Update to 1.12.0.
2022-05-28 23:19:05 +02:00
5911a8992b
gnu: r-absseq: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-absseq): Update to 1.50.0.
2022-05-28 23:19:05 +02:00
67d858b97c
gnu: r-abarray: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-abarray): Update to 1.64.0.
2022-05-28 23:19:05 +02:00
90d165ea86
gnu: r-biostrings: Update to 2.64.0.
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* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.0.
[arguments]: Remove build phase 'patch-for-R-4.2.0.
2022-05-28 23:19:05 +02:00
413133e430
gnu: Add r-decoupler.
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* gnu/packages/bioconductor.scm (r-decoupler): New variable.
2022-05-28 23:19:05 +02:00
556ca8ba21
guix: Upgrade to Bioconductor 3.15.
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* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.15.
* guix/import/cran.scm (%bioconductor-version): Same.
2022-05-28 23:19:05 +02:00
641f5c599e
gnu: apache-arrow: Update to 8.0.0.
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* gnu/packages/databases.scm (apache-arrow): Update to 8.0.0.
2022-05-28 23:19:05 +02:00
1445f2c508
gnu: Add r-rcppml.
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* gnu/packages/cran.scm (r-rcppml): New variable.
2022-05-28 23:19:04 +02:00
39dab63790
gnu: Add r-dixontest.
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* gnu/packages/cran.scm (r-dixontest): New variable.
2022-05-28 23:19:04 +02:00
d723619fc3
gnu: r-biostrings: Patch for R 4.2.0.
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* gnu/packages/bioconductor.scm (r-biostrings)[arguments]: Add build phase
'patch-for-R-4.2.0.
2022-05-28 23:19:04 +02:00
02c8c3ffbd
gnu: r-rcurl: Update to 1.98-1.6.
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* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.6.
[source]: Take from CRAN.
[arguments]: Remove trailing #T from build phase.
[native-inputs]: Add libxml2.
[inputs]: Use new input list style.
2022-05-28 23:19:04 +02:00
2e2fed31a3
gnu: nlopt: Update to 2.7.1.
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* gnu/packages/maths.scm (nlopt): Update to 2.7.1.
[source]: Fetch from git.
[build-system]: Use cmake-build-system.
[arguments]: Adjuts 'set-libnlopt-file-name phase.
[inputs]: Replace guile-2.0 with guile-3.0; add octave and python.
[native-inputs]: Add swig.
2022-05-28 23:19:04 +02:00
48328055d8
gnu: r-binom: Update to 1.1-1.1.
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* gnu/packages/statistics.scm (r-binom): Update to 1.1-1.1.
2022-05-28 23:19:04 +02:00
7fadf9bad7
gnu: r-desctools: Update to 0.99.45.
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* gnu/packages/statistics.scm (r-desctools): Update to 0.99.45.
[propagated-inputs]: Add r-httr and r-readxl.
2022-05-28 23:19:04 +02:00
55a04c5245
gnu: r-datasaurus: Update to 0.1.6.
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* gnu/packages/statistics.scm (r-datasaurus): Update to 0.1.6.
2022-05-28 23:19:04 +02:00
7d9ed0b53d
gnu: r-logspline: Update to 2.1.17.
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* gnu/packages/statistics.scm (r-logspline): Update to 2.1.17.
2022-05-28 23:19:04 +02:00
217d08960a
gnu: r-clubsandwich: Update to 0.5.6.
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* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.6.
2022-05-28 23:19:03 +02:00
a415f00c5d
gnu: r-tclust: Update to 1.5-1.
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* gnu/packages/statistics.scm (r-tclust): Update to 1.5-1.
2022-05-28 23:19:03 +02:00
58c5fe1918
gnu: r-car: Update to 3.0-13.
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* gnu/packages/statistics.scm (r-car): Update to 3.0-13.
2022-05-28 23:19:03 +02:00
40daf6db0a
gnu: r-nloptr: Update to 2.0.3.
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* gnu/packages/statistics.scm (r-nloptr): Update to 2.0.3.
2022-05-28 23:19:03 +02:00
8685079a32
gnu: r-quantreg: Update to 5.93.
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* gnu/packages/statistics.scm (r-quantreg): Update to 5.93.
[propagated-inputs]: Add r-mass and r-survival.
[native-inputs]: Add r-r-rsp.
[arguments]: Add phase 'set-HOME.
2022-05-28 23:19:03 +02:00
f4721c4a41
gnu: r-rrcov: Update to 1.7-0.
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* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-0.
2022-05-28 23:19:03 +02:00
f327949d97
gnu: r-pcapp: Update to 2.0-1.
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* gnu/packages/statistics.scm (r-pcapp): Update to 2.0-1.
2022-05-28 23:19:03 +02:00
347104de8a
gnu: r-mclust: Update to 5.4.10.
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* gnu/packages/statistics.scm (r-mclust): Update to 5.4.10.
2022-05-28 23:19:03 +02:00
917c943fbc
gnu: r-randomforest: Update to 4.7-1.1.
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* gnu/packages/statistics.scm (r-randomforest): Update to 4.7-1.1.
2022-05-28 23:19:03 +02:00
Ricardo Wurmus