acfeccd8da
gnu: openocd: Build and install info manual.
...
* gnu/packages/embedded.scm (openocd)[native-inputs]: Add texinfo.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-07-13 00:22:17 -04:00
c881516d48
gnu: proot: Update to 5.2.0-alpha.
...
This allows proot to be built for aarch64-linux and armhf-linux.
* gnu/packages/patches/proot-test-fhs.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Un-register it.
* gnu/packages/linux.scm: Update to 5.2.0-alpha.
[patches]: Remove field.
[supported-system]: New field.
[tests?]: Disable for ARM-based systems.
[phases]{fix-fhs-assumptions-in-tests, set-shell-file-name}: Combine into...
{patch-sources}: ... this new phase.
{build-manpage}: New phase.
{check}: Add seccomp issue URL in comment.
[native-inputs]: Add coreutils issue URL in comment. Add pkg-config and
python-docutils.
[inputs]: Add libarchive.
2021-07-12 11:37:40 -04:00
2d69073245
gnu: proot: Make the check phase honor the tests? argument.
...
* gnu/packages/linux.scm: Remove duplicate copyright line.
(proot): Delete trailing #t.
[phases]{check}: Skip when TESTS? is #f.
2021-07-12 11:37:31 -04:00
3af31bc25a
gnu: Add python-pygmsh.
...
* gnu/packages/simulation.scm (python-pygmsh): New variable.
2021-07-12 16:20:13 +01:00
b9fd7f9d5b
gnu: gmsh: Install Python API in standard directory.
...
* gnu/packages/maths.scm (gmsh)[imported-modules]: New argument.
[modules]: New argument.
[phases]: New argument.
[inputs]: Add python.
2021-07-12 16:19:46 +01:00
62b60ba082
gnu: Add cl-authentic.
...
* gnu/packages/lisp-xyz.scm (sbcl-authentic, ecl-authentic, cl-authentic): New
variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-12 17:04:09 +02:00
9987126065
gnu: java-xz: Update to 1.9.
...
* gnu/packages/java-compression.scm (java-xz): Update to 1.9.
[arguments]: Build with openjdk9.
2021-07-12 16:57:09 +03:00
718c09cf73
gnu: gnome-maps: Update to 3.36.7.
...
* gnu/packages/geo.scm (gnome-maps): Update to 3.36.7.
2021-07-12 15:03:24 +02:00
4f013b8c82
gnu: libheif: Satisfy 'libheif.pc'.
...
* gnu/packages/image.scm (libheif)[inputs]: Move dav1d, libaom, libde265, x265
to ...
[propagated-inputs]: ... here.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-12 16:00:20 +03:00
e34f7dfcc3
gnu: strongswan: Update to 5.9.3.
...
* gnu/packages/vpn.scm (strongswan): Update to 5.9.3.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-12 15:55:39 +03:00
23af19f964
gnu: Add spinneret.
...
* gnu/packages/lisp-xyz.scm (cl-spinneret, ecl-spinneret, sbcl-spinneret): New variables.
2021-07-12 13:09:13 +02:00
a1522f49f4
gnu: Add cl-cache-while.
...
* gnu/packages/lisp-xyz.scm (sbcl-cache-while, ecl-cache-while,
cl-cache-while): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-12 09:33:03 +02:00
fd53b2122c
gnu: cl-tailrec: Update to 0-2.6f88284.
...
* gnu/packages/lisp-xyz.scm (sbcl-tailrec): Update to 0-2.6f88284.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-12 09:24:17 +02:00
b4cb403cf4
gnu: linux-libre 4.4: Update to 4.4.275.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.275.
(linux-libre-4.4-pristine-source): Update hash.
2021-07-11 23:56:53 -04:00
610d01418f
gnu: linux-libre 4.9: Update to 4.9.275.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.275.
(linux-libre-4.9-pristine-source): Update hash.
2021-07-11 23:56:53 -04:00
575313d870
gnu: linux-libre 4.14: Update to 4.14.239.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.239.
(linux-libre-4.14-pristine-source): Update hash.
2021-07-11 23:56:52 -04:00
e833b9b30f
gnu: linux-libre 4.19: Update to 4.19.197.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.197.
(linux-libre-4.19-pristine-source): Update hash.
2021-07-11 23:56:52 -04:00
b1e0414d9f
gnu: linux-libre 5.4: Update to 5.4.131.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.131.
(linux-libre-5.4-pristine-source): Update hash.
2021-07-11 23:56:52 -04:00
d110cfa62f
gnu: linux-libre 5.10: Update to 5.10.49.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.49.
(linux-libre-5.10-pristine-source): Update hash.
2021-07-11 23:56:52 -04:00
b0f1c4fc08
gnu: linux-libre: Update to 5.12.16.
...
* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.16.
(linux-libre-5.12-pristine-source): Update hash.
2021-07-11 23:56:49 -04:00
0e86d6ffed
gnu: Add cc65.
...
* gnu/packages/emulators.scm (cc65): New variable.
2021-07-12 01:48:20 +02:00
dacda11541
gnu: Add exomizer.
...
* gnu/packages/emulators.scm (exomizer): New variable.
2021-07-12 01:48:12 +02:00
7760d28920
gnu: java-xz: Mark source as zipbomb.
...
* gnu/packages/java-compression.scm (java-xz)[source]: Download source
as zipbomb.
[argments]: Remove custom 'chdir phase.
2021-07-11 14:07:00 +03:00
24edccba3d
gnu: julia-mbedtls-jll: Update to 2.26.0+0.
...
* gnu/packages/julia-jll.scm (julia-mbedtls-jll): Update to 2.26.0+0.
2021-07-11 13:46:15 +03:00
5c3489a3f7
gnu: Add parinfer-rust.
...
* gnu/packages/text-editors.scm (parinfer-rust): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:17 +03:00
9373e358a5
gnu: Add rust-emacs-0.11.
...
* gnu/packages/crates-io.scm (rust-emacs-0.11): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:17 +03:00
6eb024ec27
gnu: Add rust-emacs-macros-0.11.
...
* gnu/packages/crates-io.scm (rust-emacs-macros-0.11): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:16 +03:00
180116a8cd
gnu: Add rust-darling-0.9.
...
* gnu/packages/crates-io.scm (rust-darling-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:16 +03:00
83274b89b0
gnu: Add rust-darling-macro-0.9.
...
* gnu/packages/crates-io.scm (rust-darling-macro-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:16 +03:00
b1f8d3a943
gnu: Add rust-darling-core-0.9.
...
* gnu/packages/crates-io.scm (rust-darling-core-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:16 +03:00
46246ea24f
gnu: Add rust-strsim-0.7.
...
* gnu/packages/crates-io.scm (rust-strsim-0.7): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:08:16 +03:00
d58064b600
gnu: Add rust-emacs-module-0.10.
...
* gnu/packages/crates-io.scm (rust-emacs-module-0.10): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:07:01 +03:00
d7b2b291a1
gnu: Add rust-bindgen-0.48.
...
* gnu/packages/crates-io.scm (rust-bindgen-0.48): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-11 11:07:00 +03:00
6db1afed3d
gnu: r-car: Update to 3.0-11.
...
* gnu/packages/statistics.scm (r-car): Update to 3.0-11.
2021-07-10 21:35:36 +02:00
762b1de334
gnu: r-lme4: Update to 1.1-27.1.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-27.1.
2021-07-10 21:35:36 +02:00
c7e86b9af6
gnu: r-quantreg: Update to 5.86.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.86.
2021-07-10 21:35:36 +02:00
4e7bf05978
gnu: r-plotly: Update to 4.9.4.1.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.9.4.1.
2021-07-10 21:35:36 +02:00
85738e4566
gnu: r-mvtnorm: Update to 1.1-2.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-2.
2021-07-10 21:35:36 +02:00
3a68bf166d
gnu: r-glmnet: Update to 4.1-2.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-2.
2021-07-10 21:35:36 +02:00
01d2ac1b7b
gnu: r-rmarkdown: Update to 2.9.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.9.
2021-07-10 21:35:35 +02:00
47ffcaf1d6
gnu: r-devtools: Update to 2.4.2.
...
* gnu/packages/statistics.scm (r-devtools): Update to 2.4.2.
2021-07-10 21:35:35 +02:00
88d0cc0e77
gnu: r-ade4: Update to 1.7-17.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-17.
[propagated-inputs]: Remove r-progress.
2021-07-10 21:35:35 +02:00
b5912cdea5
gnu: r-dplyr: Update to 1.0.7.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.7.
2021-07-10 21:35:35 +02:00
7dd5f33d31
gnu: r-testthat: Update to 3.0.4.
...
* gnu/packages/statistics.scm (r-testthat): Update to 3.0.4.
2021-07-10 21:35:35 +02:00
756449c642
gnu: r-mime: Update to 0.11.
...
* gnu/packages/statistics.scm (r-mime): Update to 0.11.
2021-07-10 21:35:35 +02:00
c4b65d50e3
gnu: r-ggplot2: Update to 3.3.5.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.5.
2021-07-10 21:35:35 +02:00
7ca365a304
gnu: r-vroom: Update to 1.5.2.
...
* gnu/packages/cran.scm (r-vroom): Update to 1.5.2.
2021-07-10 21:35:35 +02:00
15507dc5ab
gnu: r-btm: Update to 0.3.6.
...
* gnu/packages/cran.scm (r-btm): Update to 0.3.6.
2021-07-10 21:35:35 +02:00
05334f818d
gnu: r-eyelinker: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-eyelinker): Update to 0.2.1.
2021-07-10 21:35:35 +02:00
76ea5b92ed
gnu: r-stars: Update to 0.5-3.
...
* gnu/packages/cran.scm (r-stars): Update to 0.5-3.
2021-07-10 21:35:35 +02:00
9e7cae489b
gnu: r-ragg: Update to 1.1.3.
...
* gnu/packages/cran.scm (r-ragg): Update to 1.1.3.
2021-07-10 21:35:35 +02:00
fb034eee87
gnu: r-textshaping: Update to 0.3.5.
...
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.5.
2021-07-10 21:35:35 +02:00
494d72e956
gnu: r-mlr3misc: Update to 0.9.2.
...
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.9.2.
2021-07-10 21:35:35 +02:00
59355a551a
gnu: r-diversitree: Update to 0.9-16.
...
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-16.
2021-07-10 21:35:34 +02:00
53bff86803
gnu: r-slider: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-slider): Update to 0.2.2.
2021-07-10 21:35:34 +02:00
10bbb68d30
gnu: r-cpp11: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-cpp11): Update to 0.3.1.
2021-07-10 21:35:34 +02:00
933986d42f
gnu: r-spatstat: Update to 2.2-0.
...
* gnu/packages/cran.scm (r-spatstat): Update to 2.2-0.
2021-07-10 21:35:34 +02:00
69eb17751b
gnu: r-spatstat-linnet: Update to 2.2-1.
...
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.2-1.
2021-07-10 21:35:34 +02:00
86b4c08fd7
gnu: r-spatstat-core: Update to 2.2-0.
...
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.2-0.
2021-07-10 21:35:34 +02:00
b29b3b4bc8
gnu: r-spatstat-geom: Update to 2.2-0.
...
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.2-0.
2021-07-10 21:35:34 +02:00
de77e21eed
gnu: r-spatstat-utils: Update to 2.2-0.
...
* gnu/packages/cran.scm (r-spatstat-utils): Update to 2.2-0.
2021-07-10 21:35:34 +02:00
c13d544d67
gnu: r-rismed: Update to 2.3.0.
...
* gnu/packages/cran.scm (r-rismed): Update to 2.3.0.
[propagated-inputs]: Add r-httr and r-xml2.
2021-07-10 21:35:34 +02:00
8afab27a97
gnu: r-optimx: Update to 2021-6.12.
...
* gnu/packages/cran.scm (r-optimx): Update to 2021-6.12.
2021-07-10 21:35:34 +02:00
43d1119db9
gnu: r-zvcv: Update to 2.1.1.
...
* gnu/packages/cran.scm (r-zvcv): Update to 2.1.1.
2021-07-10 21:35:34 +02:00
91bb4f5228
gnu: r-tam: Update to 3.7-16.
...
* gnu/packages/cran.scm (r-tam): Update to 3.7-16.
2021-07-10 21:35:34 +02:00
6f9530ca13
gnu: r-openmx: Update to 2.19.6.
...
* gnu/packages/cran.scm (r-openmx): Update to 2.19.6.
[propagated-inputs]: Add r-rcppparallel.
2021-07-10 21:35:34 +02:00
85c613434c
gnu: r-regsem: Update to 1.8.0.
...
* gnu/packages/cran.scm (r-regsem): Update to 1.8.0.
2021-07-10 21:35:33 +02:00
7668566ed6
gnu: r-semtools: Update to 0.5-5.
...
* gnu/packages/cran.scm (r-semtools): Update to 0.5-5.
[propagated-inputs]: Add r-pbivnorm.
2021-07-10 21:35:33 +02:00
026bd0b219
gnu: r-matrixcalc: Update to 1.0-4.
...
* gnu/packages/cran.scm (r-matrixcalc): Update to 1.0-4.
2021-07-10 21:35:33 +02:00
ed5f29921d
gnu: r-icge: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-icge): Update to 0.4.1.
[propagated-inputs]: Add r-fastcluster.
2021-07-10 21:35:33 +02:00
f1d6a1fe0f
gnu: r-imager: Update to 0.42.10.
...
* gnu/packages/cran.scm (r-imager): Update to 0.42.10.
2021-07-10 21:35:33 +02:00
0e6f5ab3c8
gnu: r-accept: Update to 0.8.3.
...
* gnu/packages/cran.scm (r-accept): Update to 0.8.3.
[propagated-inputs]: Remove r-extrafont, r-mass, r-plotly, r-stringr, and r-viridis; add
r-reldist.
2021-07-10 21:35:33 +02:00
04a02f607f
gnu: r-terra: Update to 1.3-4.
...
* gnu/packages/cran.scm (r-terra): Update to 1.3-4.
2021-07-10 21:35:33 +02:00
1d101e2c17
gnu: r-ggfortify: Update to 0.4.12.
...
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.12.
2021-07-10 21:35:33 +02:00
74497e3d59
gnu: r-arsenal: Update to 3.6.3.
...
* gnu/packages/cran.scm (r-arsenal): Update to 3.6.3.
2021-07-10 21:35:33 +02:00
213aa55c49
gnu: r-sf: Update to 1.0-1.
...
* gnu/packages/cran.scm (r-sf): Update to 1.0-1.
[propagated-inputs]: Add r-s2.
2021-07-10 21:35:33 +02:00
14ace84ceb
gnu: r-spdata: Update to 0.3.10.
...
* gnu/packages/cran.scm (r-spdata): Update to 0.3.10.
2021-07-10 21:35:33 +02:00
816697dcde
gnu: r-units: Update to 0.7-2.
...
* gnu/packages/cran.scm (r-units): Update to 0.7-2.
2021-07-10 21:35:33 +02:00
8d77bafedf
gnu: r-seqinr: Update to 4.2-8.
...
* gnu/packages/cran.scm (r-seqinr): Update to 4.2-8.
2021-07-10 21:35:33 +02:00
d984f2bdca
gnu: r-lavaan: Update to 0.6-9.
...
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-9.
2021-07-10 21:35:33 +02:00
ad6c16a265
gnu: r-parallelly: Update to 1.26.1.
...
* gnu/packages/cran.scm (r-parallelly): Update to 1.26.1.
2021-07-10 21:35:32 +02:00
61d12816e0
gnu: r-huge: Update to 1.3.5.
...
* gnu/packages/cran.scm (r-huge): Update to 1.3.5.
2021-07-10 21:35:32 +02:00
fd8fa3e3f2
gnu: r-fields: Update to 12.5.
...
* gnu/packages/cran.scm (r-fields): Update to 12.5.
2021-07-10 21:35:32 +02:00
7f60a75890
gnu: r-spam: Update to 2.7-0.
...
* gnu/packages/cran.scm (r-spam): Update to 2.7-0.
2021-07-10 21:35:32 +02:00
7bd52c907d
gnu: r-gargle: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-gargle): Update to 1.2.0.
2021-07-10 21:35:32 +02:00
09455e411b
gnu: r-ks: Update to 1.13.2.
...
* gnu/packages/cran.scm (r-ks): Update to 1.13.2.
2021-07-10 21:35:32 +02:00
01bb26a35f
gnu: r-multicool: Update to 0.1-12.
...
* gnu/packages/cran.scm (r-multicool): Update to 0.1-12.
2021-07-10 21:35:32 +02:00
4c472f2d4e
gnu: r-biocmanager: Update to 1.30.16.
...
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.16.
2021-07-10 21:35:32 +02:00
ac11238206
gnu: r-weights: Update to 1.0.4.
...
* gnu/packages/cran.scm (r-weights): Update to 1.0.4.
2021-07-10 21:35:32 +02:00
92fba40999
gnu: r-rcppgsl: Update to 0.3.9.
...
* gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.9.
2021-07-10 21:35:32 +02:00
7be666db46
gnu: r-pander: Update to 0.6.4.
...
* gnu/packages/cran.scm (r-pander): Update to 0.6.4.
[native-inputs]: Add r-knitr.
2021-07-10 21:35:32 +02:00
ba4caa13e9
gnu: r-remotes: Update to 2.4.0.
...
* gnu/packages/cran.scm (r-remotes): Update to 2.4.0.
2021-07-10 21:35:32 +02:00
0a23437a54
gnu: r-gert: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-gert): Update to 1.3.1.
2021-07-10 21:35:32 +02:00
3166bc2408
gnu: r-glmmtmb: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.1.
[propagated-inputs]: Add r-numderiv.
2021-07-10 21:35:32 +02:00
0864d8fa6e
gnu: r-bayesplot: Update to 1.8.1.
...
* gnu/packages/cran.scm (r-bayesplot): Update to 1.8.1.
2021-07-10 21:35:31 +02:00
00f9a72541
gnu: r-emmeans: Update to 1.6.2-1.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.6.2-1.
2021-07-10 21:35:31 +02:00
8f7ee20c8a
gnu: r-furrr: Update to 0.2.3.
...
* gnu/packages/cran.scm (r-furrr): Update to 0.2.3.
2021-07-10 21:35:31 +02:00
1a06214393
gnu: r-raster: Update to 3.4-13.
...
* gnu/packages/cran.scm (r-raster): Update to 3.4-13.
2021-07-10 21:35:31 +02:00
603f174555
gnu: r-rootsolve: Update to 1.8.2.2.
...
* gnu/packages/cran.scm (r-rootsolve): Update to 1.8.2.2.
2021-07-10 21:35:31 +02:00
666795c501
gnu: r-insight: Update to 0.14.2.
...
* gnu/packages/cran.scm (r-insight): Update to 0.14.2.
2021-07-10 21:35:31 +02:00
350355e977
gnu: r-rbibutils: Update to 2.2.1.
...
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.1.
2021-07-10 21:35:31 +02:00
8eb8537ff9
gnu: r-ggsignif: Update to 0.6.2.
...
* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.2.
2021-07-10 21:35:31 +02:00
eaae566287
gnu: r-rio: Update to 0.5.27.
...
* gnu/packages/cran.scm (r-rio): Update to 0.5.27.
2021-07-10 21:35:31 +02:00
f5a92fff5b
gnu: r-openxlsx: Update to 4.2.4.
...
* gnu/packages/cran.scm (r-openxlsx): Update to 4.2.4.
2021-07-10 21:35:31 +02:00
fb17d9004d
gnu: r-np: Update to 0.60-11.
...
* gnu/packages/cran.scm (r-np): Update to 0.60-11.
2021-07-10 21:35:31 +02:00
2543c36d6f
gnu: r-statnet-common: Update to 4.5.0.
...
* gnu/packages/cran.scm (r-statnet-common): Update to 4.5.0.
[propagated-inputs]: Remove r-rle.
2021-07-10 21:35:31 +02:00
8ebfd52a36
gnu: r-network: Update to 1.17.1.
...
* gnu/packages/cran.scm (r-network): Update to 1.17.1.
[propagated-inputs]: Add r-statnet-common.
2021-07-10 21:35:31 +02:00
d5745aa8ec
gnu: r-tinytest: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-tinytest): Update to 1.3.1.
2021-07-10 21:35:30 +02:00
5ca69fbbf9
gnu: r-xfun: Update to 0.24.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.24.
2021-07-10 21:35:30 +02:00
ca62c0720c
gnu: r-seriation: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-seriation): Update to 1.3.0.
[propagated-inputs]: Remove r-dendextend and r-gplots.
2021-07-10 21:35:30 +02:00
e3f0e6b937
gnu: r-cli: Update to 3.0.0.
...
* gnu/packages/cran.scm (r-cli): Update to 3.0.0.
2021-07-10 21:35:30 +02:00
faa618a65e
gnu: r-corrplot: Update to 0.90.
...
* gnu/packages/cran.scm (r-corrplot): Update to 0.90.
2021-07-10 21:35:30 +02:00
c71508a41e
gnu: r-broom: Update to 0.7.8.
...
* gnu/packages/cran.scm (r-broom): Update to 0.7.8.
2021-07-10 21:35:30 +02:00
da8acbb9e0
gnu: r-psych: Update to 2.1.6.
...
* gnu/packages/cran.scm (r-psych): Update to 2.1.6.
2021-07-10 21:35:30 +02:00
ee927e952f
gnu: r-rmysql: Update to 0.10.22.
...
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.22.
2021-07-10 21:35:30 +02:00
ce5e71e820
gnu: r-proxy: Update to 0.4-26.
...
* gnu/packages/cran.scm (r-proxy): Update to 0.4-26.
2021-07-10 21:35:30 +02:00
c8fcf4d8de
gnu: r-ggally: Update to 2.1.2.
...
* gnu/packages/cran.scm (r-ggally): Update to 2.1.2.
2021-07-10 21:35:30 +02:00
0d847b49a9
gnu: r-circlize: Update to 0.4.13.
...
* gnu/packages/cran.scm (r-circlize): Update to 0.4.13.
2021-07-10 21:35:30 +02:00
abb371b6a0
gnu: r-rcpp: Update to 1.0.7.
...
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.7.
2021-07-10 21:35:30 +02:00
e62ed5eabb
gnu: r-colorspace: Update to 2.0-2.
...
* gnu/packages/cran.scm (r-colorspace): Update to 2.0-2.
2021-07-10 21:35:30 +02:00
87de49a2b4
gnu: r-curl: Update to 4.3.2.
...
* gnu/packages/cran.scm (r-curl): Update to 4.3.2.
2021-07-10 21:35:30 +02:00
3293074c51
gnu: r-ggpmisc: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.0.
[propagated-inputs]: Remove r-magrittr; add r-ggpp and r-quantreg.
2021-07-10 21:35:29 +02:00
8c5561396f
gnu: r-rticles: Update to 0.20.
...
* gnu/packages/cran.scm (r-rticles): Update to 0.20.
2021-07-10 21:35:29 +02:00
95aec55c4a
gnu: r-googledrive: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-googledrive): Update to 2.0.0.
[propagated-inputs]: Remove r-curl; add r-cli, r-lifecycle, r-pillar, r-vctrs, and r-withr.
2021-07-10 21:35:29 +02:00
4140b66837
gnu: r-gviz: Update to 1.36.2.
...
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.2.
2021-07-10 21:35:29 +02:00
564142d25e
gnu: r-catalyst: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.1.
2021-07-10 21:35:29 +02:00
c4ffceb0c2
gnu: r-rhdf5lib: Update to 1.14.2.
...
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.2.
2021-07-10 21:35:29 +02:00
e957d6c93b
gnu: r-bioconcotk: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.1.
2021-07-10 21:35:29 +02:00
1cbcf54204
gnu: r-biocstyle: Update to 2.20.2.
...
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.2.
2021-07-10 21:35:29 +02:00
23abd7b6b6
gnu: r-mixomics: Update to 6.16.1.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.1.
2021-07-10 21:35:29 +02:00
3d539883ca
gnu: r-rsubread: Update to 2.6.3.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.3.
2021-07-10 21:35:29 +02:00
a94d1e3b4c
gnu: r-annaffy: Update to 1.64.2.
...
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.64.2.
2021-07-10 21:35:29 +02:00
344c901a4c
gnu: r-clusterprofiler: Update to 4.0.2.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.2.
2021-07-10 21:35:29 +02:00
a5e6826020
gnu: r-enrichplot: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.2.
2021-07-10 21:35:29 +02:00
209642912d
gnu: r-dose: Update to 3.18.1.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.1.
2021-07-10 21:35:29 +02:00
072533f579
gnu: r-diffbind: Update to 3.2.4.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.4.
2021-07-10 21:35:28 +02:00
9496f34e23
gnu: r-systempiper: Update to 1.26.3.
...
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.3.
[propagated-inputs]: Add r-crayon and r-s4vectors.
2021-07-10 21:35:28 +02:00
ea52ad7d4f
gnu: r-mzr: Update to 2.26.1.
...
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.1.
2021-07-10 21:35:28 +02:00
8936e45327
gnu: r-limma: Update to 3.48.1.
...
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.1.
2021-07-10 21:35:28 +02:00
dfe8e5cca6
gnu: r-genomeinfodb: Update to 1.28.1.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.1.
2021-07-10 21:35:28 +02:00
fd00ed8ff8
gnu: r-ensembldb: Update to 2.16.2.
...
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.2.
2021-07-10 21:35:28 +02:00
3c60e8d5e5
gnu: r-edaseq: Update to 2.26.1.
...
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.1.
2021-07-10 21:35:28 +02:00
f8d7d07679
gnu: r-biocparallel: Update to 1.26.1.
...
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.1.
2021-07-10 21:35:28 +02:00
03c9d86432
gnu: r-biomart: Update to 2.48.2.
...
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.2.
2021-07-10 21:35:28 +02:00
74bfaf92db
gnu: r-annotationhub: Update to 3.0.1.
...
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.1.
2021-07-10 21:35:28 +02:00
bc85faf9a2
gnu: Add r-ggpp.
...
* gnu/packages/cran.scm (r-ggpp): New variable.
2021-07-10 21:35:28 +02:00
48abef355d
gnu: Add r-s2.
...
* gnu/packages/cran.scm (r-s2): New variable.
2021-07-10 21:35:28 +02:00
9a3f66ee7b
gnu: Add r-wk.
...
* gnu/packages/cran.scm (r-wk): New variable.
2021-07-10 21:35:28 +02:00
39e1bc5b02
gnu: Add r-reldist.
...
* gnu/packages/cran.scm (r-reldist): New variable.
2021-07-10 21:35:28 +02:00
c0e4357043
gnu: r-gtools: Update to 3.9.2.
...
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.
[arguments]: Remove.
2021-07-10 21:35:27 +02:00
ce84ba5bd7
gnu: r-vdiffr: Update to 1.0.2.
...
* gnu/packages/cran.scm (r-vdiffr): Update to 1.0.2.
[source]: Remove snippet.
[arguments]: Remove.
[inputs]: Remove freetype and harfbuzz; add libpng and zlib.
[propagated-inputs]: Remove r-bh, r-devtools, r-fontquiver,
r-freetypeharfbuzz, r-gdtools, r-htmlwidgets, r-purrr, r-r6, r-rcpp, r-shiny,
and r-usethis; add r-cpp11 and r-lifecycle.
[native-inputs]: Remove esbuild and js-jquery.
2021-07-10 21:35:27 +02:00
94be433332
gnu: r-rintrojs: Update to 0.3.0.
...
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.0.
[source]: Delete minified JavaScript in snippet.
[arguments]: Minify with esbuild.
[native-inputs]: Replace uglify-js with esbuild; update intro.js to 3.2.1.
[license]: Add license of intro.js.
2021-07-10 21:35:24 +02:00
5c45ed059c
gnu: qpdfview: Use qt-build-system.
...
This fixes compilation after the recent reorganization of qt-build-system. As
a side effect, specifying Qt plugins with environment variables now works.
* gnu/packages/pdf.scm (qpdfview)[build-system]: Use qt-build-system.
[arguments]: Drop #:modules and #:imported-modules, and the 'qt-wrap
phase. Specify that there are no tests.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-07-10 14:17:49 -04:00
45fdb03500
gnu: sbcl-generic-cl: Update to 0.9.
...
* gnu/packages/lisp-xyz.scm (sbcl-generic-cl): Update to 0.9.
2021-07-10 17:07:17 +02:00
e1b53728cc
gnu: Add cl-form-types.
...
* gnu/packages/lisp-xyz.scm (cl-form-types, ecl-cl-form-types,
sbcl-cl-form-types): New variables.
2021-07-10 17:07:17 +02:00
c21ccbf14e
gnu: Add ocaml-bibtex2html.
...
* gnu/packages/ocaml.scm (ocaml-bibtex2html): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-07-10 15:02:12 +02:00
f7f6cbb6b6
gnu: Add texlive-preprint.
...
* gnu/packages/tex.scm (texlive-preprint): New variable.
2021-07-10 15:01:59 +02:00
bfa0df0d61
gnu: hevea: Update to 2.35.
...
* gnu/packages/ocaml.scm (hevea): Update to 2.35.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-07-10 15:01:31 +02:00
4dc0337146
gnu: sbcl-cl-gserver: Update to 1.8.0.
...
* gnu/packages/lisp-xyz.scm (sbcl-cl-gserver): Update to 1.8.0.
2021-07-10 12:18:22 +02:00
24ee1448e8
gnu: Add netdiscover.
...
* gnu/packages/networking.scm (netdiscover): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-07-10 15:11:26 +05:30
2ea2bca1dd
services: qemu-binfmt: Preserve argv[0] by default.
...
Previously, argv[0] would be replaced by the absolute file name of the
executable. This could cause discrepancies, for example in the
Coreutils test suite: <https://issues.guix.gnu.org/49485 >.
* gnu/services/virtualization.scm (<qemu-platform>)[flags]: Default to "FP".
2021-07-10 00:24:59 +02:00
4ac2e09051
gnu: go-github-com-golang-snappy: Update to 0.0.4.
...
* gnu/packages/syncthing.scm (go-github-com-golang-snappy): Update to 0.0.4.
2021-07-09 21:34:34 +05:30
314beace60
gnu: emacs-dash: Update to 2.19.0.
...
* gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.19.0.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 17:57:11 +02:00
2086a6a335
gnu: emacs-telega: Fix 'patch-source' phase.
...
* gnu/packages/emacs-xyz.scm (emacs-telega)[#:phases]<patch-sources>:
Add missing slash in ‘/bin’ when patching general commands.
Also patch telega-vvnote.el.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 17:57:10 +02:00
4236b8586d
gnu: emacs-xyz: Fix indentation.
...
* gnu/packages/emacs-xyz.scm: Delete trailing newline.
(emacs-purescript-mode): Delete trailing space.
2021-07-09 15:08:04 +02:00
55d8eca5e9
gnu: emacs-telega-server: Update to 0.7.025.
...
* gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to 0.7.025.
2021-07-09 15:08:04 +02:00
cd42e8001a
gnu: emacs-telega-contrib: Update to 0.7.024.
...
* gnu/packages/emacs-xyz.scm(emacs-telega-contrib): Update to 0.7.024.
[arguments]<#:phases>: Back to root directory of build before phase
'install-license-files' to properly install licenses.
[propagated-inputs]: Add emacs-dashboard, emacs-transient.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 15:08:04 +02:00
a303be7c3b
gnu: emacs-telega: Update to 0.7.024.
...
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.7.024.
[build-system] Use emacs-build-system.
[arguments] Add #:emacs.
Drop outdated phases.
Update ‘patch-sources’ phase to find new occurences of ffmpeg to patch.
Add new ‘configure’ and ‘install-share-files’ phases.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 15:08:04 +02:00
d0ccdd707d
gnu: Add emacs-telega-server.
...
* gnu/packages/emacs-xyz.scm (emacs-telega-server): New variable.
* gnu/packages/patches/emacs-telega-path-placeholder.patch: New file.
* gnu/package/patches/emacs-telega-patch-server-functions.patch: Remove stale patch.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09 15:08:04 +02:00
37861f6c29
ci: Add bootstrap packages to the core subset.
...
* gnu/ci.scm (%bootstrap-packages): New variable.
(cuirass-jobs): Add it to the core subset.
2021-07-09 14:12:15 +02:00
74168d99bb
system: Provide mg instead of zile.
...
Since the update to the 2.6.2 release, the closure size of zile has
increased. Switch to mg which is lighter.
* gnu/system.scm (%base-packages-interactive): Replace zile by mg.
* doc/guix.texi (Proceeding with the Installation,
Using the Configuration System): Adapt those sections.
2021-07-09 12:08:12 +02:00
b182121458
gnu: python-arrow: Honor #:tests? in 'check' phase.
...
* gnu/packages/time.scm (python-arrow)[arguments]: 'check' phase honors
#:tests?.
2021-07-09 11:58:52 +02:00
7ad7b07806
gnu: python-arrow: Update to 1.1.1.
...
* gnu/packages/time.scm (python-arrow): Update to 1.1.1.
2021-07-09 11:58:51 +02:00
af7708261f
gnu: Add repo2docker.
...
* gnu/packages/jupyter.scm (repo2docker): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
faa26f2342
gnu: Add python-pydata-sphinx-theme.
...
* gnu/packages/sphinx.scm (python-pydata-sphinx-theme): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
885c1bd06e
gnu: Add python-sphinxcontrib-autoprogram.
...
* gnu/packages/sphinx.scm (python-sphinxcontrib-autoprogram): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
d6b3908840
gnu: Add python-jupyter-sphinx.
...
* gnu/packages/sphinx.scm (python-jupyter-sphinx): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
e31979c3a5
gnu: Add python-pytest-regressions.
...
* gnu/packages/check.scm (python-pytest-regressions): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
778ae273e9
gnu: Add python-pytest-datadir.
...
* gnu/packages/check.scm (python-pytest-datadir): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:51 +02:00
68a33f3d19
gnu: Add python-recommonmark.
...
* gnu/packages/python-xyz.scm (python-recommonmark): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:50 +02:00
4204af9967
gnu: Add python-escapism.
...
* gnu/packages/python-xyz.scm (python-escapism): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-07-09 11:58:50 +02:00
9bfc4a8187
gnu: python-seaborn: Update to 0.11.1.
...
* gnu/packages/patches/python-seaborn-kde-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-seaborn): Use it, and update to
0.11.1.
2021-07-09 11:58:50 +02:00
3125255cc5
gnu: python-seaborn: Simplify 'start-xserver' phase.
...
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: In
'start-xserver' phase, assume "Xvfb" is in $PATH.
2021-07-09 11:58:50 +02:00
c7cfe54018
gnu: python-seaborn: 'check' phase honors #:tests?.
...
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Change
'check' phase to honor #:tests?.
2021-07-09 11:58:50 +02:00
ef3d60fc76
gnu: mergerfs-tools: Update to 0.0.0-3.3b6fe00.
...
* gnu/packages/file-systems.scm (mergerfs-tools): Update to 0.0.0-3.3b6fe00.
2021-07-09 04:30:45 +02:00
7292585f3c
gnu: mergerfs: Clean up arguments.
...
* gnu/packages/file-systems.scm (mergerfs)[arguments]: Remove some
incorrect comments & rewrite code accordingly. Pass the PREFIX as a
make flag.
2021-07-09 04:30:39 +02:00
478104c398
gnu: mergerfs: Do not refer to the native bash.
...
* gnu/packages/linux.scm (mergerfs)[inputs]: Add bash-minimal.
[arguments]: Refer to it rather than to the native build bash.
2021-07-09 04:27:33 +02:00
5f071925ef
gnu: mergerfs: Cross-compile.
...
* gnu/packages/file-systems.scm (mergerfs)[arguments]: Use CC-FOR-TARGET
and CXX-FOR-TARGET. Don't let the Makefile strip binaries.
2021-07-09 04:26:45 +02:00
73a2edf25b
gnu: mergerfs: Update to 2.32.6.
...
* gnu/packages/file-systems.scm (mergerfs): Update to 2.32.6.
2021-07-09 03:30:20 +02:00
e499500730
gnu: Add bibtool.
...
* gnu/packages/tex.scm (bibtool): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-09 00:22:05 +02:00
889c5c584f
gnu: clikan: Upgrade to 0.2.1.
...
* gnu/packages/task-management.scm (clikan)[version]: Upgrade to
0.2.1.
[arguments]: Enable tests.
[inputs]: Add python-rich.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-09 00:08:49 +02:00
e01ae01e57
gnu: drawing: Update to 0.8.2.
...
* gnu/packages/gnome.scm (drawing): Update to 0.8.2.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-09 00:01:31 +02:00
65c70b820b
gnu: lightspark: Update to 0.8.5.
...
* gnu/packages/animation.scm (lightspark): Update to 0.8.5.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-07-09 00:00:37 +02:00
000083c098
gnu: linux-libre 5.4: Update to 5.4.130.
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* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.130.
(linux-libre-5.4-pristine-source): Update hash.
2021-07-08 16:27:14 -04:00
6d625242a6
gnu: linux-libre 5.10: Update to 5.10.48.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.48.
(linux-libre-5.10-pristine-source): Update hash.
2021-07-08 16:27:14 -04:00
d9b1cd8d28
gnu: linux-libre: Update to 5.12.15.
...
* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.15.
(linux-libre-5.12-pristine-source): Update hash.
2021-07-08 16:27:13 -04:00
efdb07729c
gnu: python-shiboken-2: Update to 5.15.2.
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* gnu/packages/qt.scm (python-shiboken-2): Update to 5.15.2.
2021-07-08 16:27:10 -04:00
f78a09f0c4
gnu: libolm: Respect "--without-tests".
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* gnu/packages/libolm.scm
(libolm)[arguments]<#:phases>{check}: Respect #:tests?.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 21:20:17 +02:00
f78975c8e0
gnu: python-h2: Respect "--without-tests".
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* gnu/packages/python-web.scm
(python-h2)[arguments]<#:phases>{check}: Respect #:tests?.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 21:20:13 +02:00
c46c8531dd
gnu: python-h11: Respect "--without-tests".
...
* gnu/packages/python-web.scm
(python-h11)[arguments]<#:phases>{check}: Respect #:tests?.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-08 21:20:09 +02:00
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