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Author SHA1 Message Date
Marius Bakke
087c94019d
gnu: OpenBLAS: Update to 0.3.8.
* gnu/packages/maths.scm (openblas): Update to 0.3.8.
2020-02-15 22:02:56 +01:00
Marius Bakke
7edafc884c
Merge branch 'master' into core-updates 2020-02-14 19:05:45 +01:00
Kei Kebreau
8a0dd289c5
gnu: octave, octave-cli: Update to 5.2.0.
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0.
[inputs]: Add bdb.
2020-02-10 14:43:06 -05:00
Marius Bakke
52665d2b6b
Merge branch 'staging' into core-updates 2020-02-03 15:45:44 +01:00
Eric Bavier
aa2e83cce2
gnu: superlu-dist: Update to 6.2.0.
* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0.
[source]: Update upstream url.  Remove mpi deprecations patch.
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-01-31 09:17:16 -06:00
Eric Bavier
48fe5c36a2
gnu: superlu: Update upstream url.
* gnu/packages/maths.scm (superlu)[source,home-page]: Update url.
2020-01-31 09:13:57 -06:00
Marius Bakke
12d8adbfc0
Merge branch 'staging' into core-updates 2020-01-23 23:11:11 +01:00
Kei Kebreau
48446f0f94
gnu: wxmaxima: Update to 20.01.3.
* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3.
[home-page]: Update URL.
2020-01-23 14:22:41 -05:00
Marius Bakke
4bd428a7ce
gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'.
* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to
LIBJPEG-TURBO.
* gnu/packages/admin.scm (testdisk)[inputs]: Likewise.
* gnu/packages/algebra.scm (giac)[inputs]: Likewise.
* gnu/packages/animation.scm (synfig)[inputs]: Likewise.
* gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise.
* gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise.
* gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise.
* gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise.
* gnu/packages/display-managers.scm (slim)[inputs]: Likewise.
* gnu/packages/ebook.scm (fbreader)[inputs]: Likewise.
* gnu/packages/emacs.scm (emacs)[inputs]: Likewise.
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise.
* gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise.
* gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise.
* gnu/packages/freedesktop.scm (weston)[inputs]: Likewise.
* gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame,
eureka, ioquake3)[inputs]: Likewise.
* gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest,
fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise.
* gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise.
* gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise.
(ghostscript)[inputs, native-inputs]: Likewise.
* gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise.
* gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise.
* gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise.
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise.
* gnu/packages/graphics.scm (blender, blender-2.79, openimageio,
openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise.
* gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise.
* gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise.
* gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise.
* gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl,
insight-toolkit)[inputs]: Likewise.
* gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise.
* gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage,
vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise.
* gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise.
* gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11,
openjdk12)[inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[inputs]: Likewise.
* gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise.
* gnu/packages/mate.scm (atril, eom)[inputs]: Likewise.
* gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise.
* gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise.
* gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise.
* gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin,
rawtherapee)[inputs]: Likewise.
* gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise.
* gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise.
* gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise.
* gnu/packages/scheme.scm (racket)[inputs]: Likewise.
* gnu/packages/scribus.scm (scribus)[inputs]: Likewise.
* gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise.
(guile-sdl)[native-inputs]: Likewise.
* gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise.
* gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise.
* gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise.
* gnu/packages/upnp.scm (readymedia)[inputs]: Likewise.
* gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise.
* gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise.
* gnu/packages/web.scm (netsurf)[inputs]: Likewise.
* gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise.
* gnu/packages/wine.scm (wine)[inputs]: Likewise.
* gnu/packages/wv.scm (wv)[inputs]: Likewise.
* gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise.
* gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise.
* gnu/packages/xfce.scm (tumbler)[inputs]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise.
* gnu/packages/xorg.scm (xpra)[inputs]: Likewise.
2020-01-22 22:12:34 +01:00
Marius Bakke
8ed9be3fac
Merge branch 'staging' into core-updates 2020-01-21 22:39:42 +01:00
Tobias Geerinckx-Rice
1e05e837c7
gnu: elemental: Update home page.
* gnu/packages/maths.scm (elemental)[home-page]: Use repository home
page.
2020-01-19 17:57:09 +01:00
Tobias Geerinckx-Rice
2299d83e2f
gnu: petsc: Use HTTPS home page.
* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS.
2020-01-19 06:09:02 +01:00
Tobias Geerinckx-Rice
0a44f9c4e4
gnu: Use HTTPS for www.hdfgroup.org.
* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS.
(hdf-java, h5check)[source]: Likewise.
2020-01-17 23:32:34 +01:00
Tobias Geerinckx-Rice
821aa687b4
gnu: netcdf: Use HTTPS home page.
* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS.
2020-01-17 23:32:34 +01:00
Tobias Geerinckx-Rice
d5730000e2
gnu: scotch: Use HTTPS home page.
* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS.
2020-01-17 23:32:34 +01:00
Amin Bandali
a3143063ae
Update email address for Amin Bandali.
* .mailmap: Add name and email addresses for Amin Bandali.
* gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm:
Update email address for Amin Bandali.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2020-01-17 18:30:33 +01:00
Marius Bakke
3cfe76bec0
Merge branch 'master' into core-updates 2020-01-15 00:09:46 +01:00
Paul Garlick
09bad3cd42
gnu: python-slepc4py: Update to 3.11.0.
* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0.
2020-01-14 17:24:11 +00:00
Paul Garlick
f1cc312e15
gnu: python-petsc4py: Update to 3.11.0.
* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0.
2020-01-14 17:23:50 +00:00
Marius Bakke
b7bf02a418
Merge branch 'master' into core-updates 2020-01-11 22:38:24 +01:00
Tobias Geerinckx-Rice
cb169aae81
gnu: hdf5@1.10: Update to 1.10.6.
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6.
2020-01-10 23:47:28 +01:00
Konrad Hinsen
e6de152dc1
gnu: lapack: Update to 3.9.0.
* gnu/packages/maths.scm (lapack): Update to 3.9.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-01-07 12:25:09 +01:00
Mathieu Othacehe
ce9383c090
Merge remote-tracking branch 'master' into core-updates. 2019-12-31 11:04:51 +01:00
Ludovic Courtès
94fea21b21
gnu: hdf5@1.10: Update to 1.10.5.
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5.  Remove
"hdf5-mpi-deprecations.patch".
* gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-13 18:04:04 +01:00
Efraim Flashner
c9e676d0b1
Merge remote-tracking branch 'origin/master' into core-updates 2019-12-12 04:10:59 +02:00
Andreas Enge
0ffc2d537d
gnu: Add lrslib.
* gnu/packages/maths.scm (lrslib): New variable.
2019-12-06 22:56:02 +01:00
Marius Bakke
9d5aa00906
Merge branch 'master' into core-updates 2019-12-05 17:57:35 +01:00
Marius Bakke
33b59c1a3e
Merge branch 'staging' 2019-12-04 20:12:41 +01:00
Tobias Geerinckx-Rice
dbef037ff4
gnu: z3: Update to 4.8.7.
* gnu/packages/maths.scm (z3): Update to 4.8.7.
2019-12-01 00:49:15 +01:00
Tobias Geerinckx-Rice
1ff64c503a
gnu: nauty: Update to 2.6r12.
* gnu/packages/maths.scm (nauty): Update to 2.6r12.
2019-12-01 00:49:14 +01:00
Marius Bakke
0897ad7fac
Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
Ricardo Wurmus
f3640e7395
gnu: Remove obsolete import of R build system module.
* gnu/packages/maths.scm: Remove import of (guix build-system r).
2019-11-27 18:29:32 +01:00
zimoun
ef7944b94f
gnu: r-subplex: Move to (gnu packages cran).
* gnu/packages/maths.scm (r-subplex): Move from here...
* gnu/packages/cran.scm (r-subplex): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27 18:15:34 +01:00
zimoun
682768deb0
gnu: r-pracma: Move to (gnu packages cran).
* gnu/packages/maths.scm (r-pracma): Move from here...
* gnu/packages/cran.scm (r-pracma): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27 18:15:34 +01:00
zimoun
9bd56b1a77
gnu: r-desolve: Move to (gnu packages cran).
* gnu/packages/maths.scm (r-desolve): Move from here...
* gnu/packages/cran.scm (r-desolve): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27 18:15:34 +01:00
zimoun
0eb59d9eac
gnu: r-quadprog: Move to (gnu packages cran).
* gnu/packages/maths.scm (r-quadprog): Move from here...
* gnu/packages/cran.scm (r-quadprog): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27 18:15:34 +01:00
Efraim Flashner
7ad3c81240
gnu: gsl: Update to 2.6.
* gnu/packages/maths.scm (gsl): Update to 2.6.
[source]: Remove patch.
* gnu/packages/patches/gsl-test-i686.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-11-26 22:26:20 +02:00
Kei Kebreau
1e8609f238
gnu: wxmaxima: Update to 19.11.1.
* gnu/packages/maths.scm (wxmaxima): Update to 19.11.1.
2019-11-23 15:33:14 -05:00
Tobias Geerinckx-Rice
ec9a15c2eb
gnu: r-quadprog: Update to 1.5-8.
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-8.
2019-11-23 02:00:40 +01:00
Tobias Geerinckx-Rice
3db9cbf676
gnu: r-desolve: Update to 1.25.
* gnu/packages/maths.scm (r-desolve): Update to 1.25.
2019-11-23 02:00:40 +01:00
Marius Bakke
b60d2bfff9
Merge branch 'master' into staging 2019-11-21 22:44:15 +01:00
Robert Smith
3b7828cc7f
gnu: Add minisat.
* gnu/packages/patches/minisat-friend-declaration.patch: New file.
* gnu/packages/patches/minisat-install.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add both files above.
* gnu/packages/maths.scm (minisat): New exported variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-19 17:27:58 +01:00
Marius Bakke
023522d3a1
Merge branch 'master' into staging 2019-10-21 00:33:43 +02:00
Marius Bakke
9d731fb61d
gnu: vc: Update to 1.4.1.
* gnu/packages/maths.scm (vc): Update to 1.4.1.
[native-inputs]: Add VIRTEST and a test data origin.
[arguments]: Add phase to copy test data.
2019-10-20 00:31:15 +02:00
Marius Bakke
b95d1b3289
Merge branch 'master' into staging 2019-10-18 18:10:47 +02:00
Maurice Brémond
06e1239502
gnu: mumps: Build and install shared libraries.
* gnu/packages/patches/mumps-shared-libseq.patch,
gnu/packages/patches/mumps-shared-mumps.patch,
gnu/packages/patches/mumps-shared-pord.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (mumps)[source](patches): Add them.
[arguments]: In 'configure' phase, adjust "Makefile.inc" for shared
library support.  In 'install' phase, install libmpiseq.so when it
exists.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2019-10-14 18:25:31 +02:00
Maurice Brémond
5dbc79eb60
gnu: mumps: Update to 5.2.1.
* gnu/packages/maths.scm (mumps): Update to 5.2.1.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2019-10-14 18:25:31 +02:00
Marius Bakke
378ebc048c
Merge branch 'master' into staging 2019-10-13 23:04:06 +02:00
Jan Nieuwenhuizen
185152e39e
gnu: mcrl2: Update source url.
* gnu/packages/maths.scm (mcrl2): Update source url.
2019-10-08 23:25:51 +02:00
Marius Bakke
2ea095300a
gnu: OpenBLAS: Update to 0.3.7.
* gnu/packages/maths.scm (openblas): Update to 0.3.7.
2019-10-08 21:23:06 +02:00