Ben Woodcroft
|
0d2b2fd4f4
|
gnu: diamond: Update to 0.9.3.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.3.
|
2017-05-28 21:06:06 -04:00 |
|
Ben Woodcroft
|
ca40d4e7c5
|
gnu: diamond: Update to 0.9.2.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.2.
|
2017-05-27 22:03:00 -04:00 |
|
Ben Woodcroft
|
b608765a2c
|
gnu: diamond: Update to 0.9.1.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.1.
|
2017-05-22 21:17:41 +01:00 |
|
Ricardo Wurmus
|
296b3c631c
|
gnu: Add r-edaseq.
* gnu/packages/bioinformatics.scm (r-edaseq): New variable.
|
2017-05-22 18:54:59 +02:00 |
|
Ricardo Wurmus
|
7b46532779
|
gnu: Add r-deseq.
* gnu/packages/bioinformatics.scm (r-deseq): New variable.
|
2017-05-22 18:54:59 +02:00 |
|
Ricardo Wurmus
|
d4b83651d1
|
gnu: Add r-aroma-light.
* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
|
2017-05-22 18:54:58 +02:00 |
|
Ben Woodcroft
|
74297231be
|
gnu: fraggenescan: Update to 1.30.
* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30.
[arguments]: Update patching of paths, install procedure. Add new test
case.
|
2017-05-22 11:44:20 +01:00 |
|
Ben Woodcroft
|
7569613076
|
gnu: roary: Update to 3.8.2.
* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2.
|
2017-05-22 11:44:20 +01:00 |
|
Ben Woodcroft
|
3cbfc149c3
|
gnu: taxtastic: Update to 0.6.4.
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4.
[source]: Use PyPI URI.
|
2017-05-22 11:44:19 +01:00 |
|
Roel Janssen
|
b458413721
|
gnu: r-mutationalpatterns: Update to 1.2.1.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1.
|
2017-05-22 09:44:08 +02:00 |
|
Ben Woodcroft
|
ef81341f0e
|
gnu: diamond: Update to 0.9.0.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0.
[license]: Change to AGPL3+.
|
2017-05-21 16:08:03 +01:00 |
|
Ben Woodcroft
|
88682c9a72
|
gnu: fasttree: Update to 2.1.10.
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10.
|
2017-05-21 15:42:08 +01:00 |
|
Ben Woodcroft
|
abc08cbae6
|
gnu: python-biom-format: Update to 2.1.6.
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6.
[propagated-inputs]: Add python-pandas.
|
2017-05-21 15:42:08 +01:00 |
|
Pjotr Prins
|
2b18ad054c
|
gnu: Add gemma.
* gnu/packages/bioinformatics.scm (gemma): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
2017-05-18 14:22:03 +02:00 |
|
Ludovic Courtès
|
2252f087d4
|
gnu: guile-json: Rename "guile2.2-json" to "guile-json".
* gnu/packages/guile.scm (guile-json)[native-inputs]: Change GUILE-2.0
to GUILE-2.2.
(guile2.2-json): Define using 'deprecated-package'.
(guile2.0-json): New variable.
* gnu/packages/bioinformatics.scm (rcas-web)[inputs]: Update accordingly.
* gnu/packages/ci.scm (cuirass)[inputs]: Likewise.
* gnu/packages/package-management.scm (guix)[inputs]: Likewise.
|
2017-05-13 22:25:22 +02:00 |
|
Ben Woodcroft
|
c033f5d6b5
|
gnu: Add pplacer.
* gnu/packages/bioinformatics.scm (pplacer, pplacer-scripts): New
variables.
|
2017-05-10 22:13:55 +02:00 |
|
Ben Woodcroft
|
ad0ae297d4
|
gnu: Add taxtastic.
* gnu/packages/bioinformatics.scm (taxtastic): New variable.
|
2017-05-10 22:13:55 +02:00 |
|
Petter
|
2f3108ad03
|
gnu: Avoid circular dependencies by Perl license.
* guix/licenses.scm (perl-license): New variable.
* gnu/packages/bioinformatics.scm: Change (package-license perl) to perl-license.
* gnu/packages/compression.scm: Same.
* gnu/packages/databases.scm: Same.
* gnu/packages/gd.scm: Same.
* gnu/packages/language.scm: Same.
* gnu/packages/libevent.scm: Same.
* gnu/packages/mail.scm: Same.
* gnu/packages/messaging.scm: Same.
* gnu/packages/ncurses.scm: Same.
* gnu/packages/networking.scm: Same.
* gnu/packages/photo.scm: Same.
* gnu/packages/tcl.scm: Same.
* gnu/packages/tex.scm: Same.
* gnu/packages/tls.scm: Same.
* gnu/packages/web.scm: Same.
* gnu/packages/wm.scm: Same.
* gnu/packages/xml.scm: Same.
* gnu/packages/xorg.scm: Same.
* gnu/packages/zip.scm: Same.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
2017-05-02 23:41:14 +02:00 |
|
Roel Janssen
|
f432254237
|
gnu: vcftools: Update to 0.1.15.
* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.15.
|
2017-05-01 16:18:39 +02:00 |
|
Efraim Flashner
|
90f83099e8
|
gnu: r-genomeinfodbdata: Fix source url.
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata)[source]: Use
source uri and not bioconductor-uri shortener.
|
2017-04-29 22:53:43 +03:00 |
|
Roel Janssen
|
524bfe2dbf
|
gnu: r-msnid: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.10.0.
|
2017-04-28 11:05:42 +02:00 |
|
Roel Janssen
|
82359c72cb
|
gnu: r-msnbase: Update to 2.2.0.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.2.0.
|
2017-04-28 11:05:41 +02:00 |
|
Roel Janssen
|
5bfa6e090d
|
gnu: r-pcamethods: Update to 1.68.0.
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0.
|
2017-04-28 11:05:40 +02:00 |
|
Roel Janssen
|
63bf2102cd
|
gnu: r-mzid: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0.
|
2017-04-28 11:05:38 +02:00 |
|
Roel Janssen
|
60c08b2ff4
|
gnu: r-vsn: Update to 3.44.0.
* gnu/packages/bioinformatics.scm (r-vsn):
[source]: Update to 3.44.0,
[propagated-inputs]: Add r-hexbin.
|
2017-04-28 11:05:37 +02:00 |
|
Roel Janssen
|
bd3cc4cc52
|
gnu: r-affy: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0.
|
2017-04-28 11:05:37 +02:00 |
|
Roel Janssen
|
71abcc4cbf
|
gnu: r-affyio: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0.
|
2017-04-28 11:05:36 +02:00 |
|
Roel Janssen
|
e440ad6d4f
|
gnu: r-mzr: Update to 2.10.0.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.10.0.
|
2017-04-28 11:05:35 +02:00 |
|
Roel Janssen
|
5b1337cc60
|
gnu: r-protgenerics: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.8.0.
|
2017-04-28 11:05:33 +02:00 |
|
Roel Janssen
|
1d09d017db
|
gnu: r-sva: Update to 3.24.0.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.0.
|
2017-04-28 11:05:20 +02:00 |
|
Roel Janssen
|
d52d2d623a
|
gnu: r-copywriter: Update to 2.8.0.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.0.
|
2017-04-28 11:05:19 +02:00 |
|
Roel Janssen
|
7d72f2a803
|
gnu: r-chipseq: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.26.0.
|
2017-04-28 11:05:18 +02:00 |
|
Roel Janssen
|
04049a5f2c
|
gnu: r-rhdf5: Update to 2.20.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.20.0.
|
2017-04-28 11:05:18 +02:00 |
|
Roel Janssen
|
ff58a1af98
|
gnu: r-tximport: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.4.0.
|
2017-04-28 11:05:16 +02:00 |
|
Roel Janssen
|
cf4ac4e465
|
gnu: r-mutationalpatterns: Update to 1.2.0.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns):
[source]: Update to 1.2.0,
[propagated-inputs]: Add r-bsgenome-hsapiens-1000genomes-hs37d5,
r-bsgenome-hsapiens-ucsc-hg19.
|
2017-04-28 11:05:13 +02:00 |
|
Roel Janssen
|
ccd2aade98
|
gnu: r-bamsignals: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.8.0.
|
2017-04-28 11:05:12 +02:00 |
|
Roel Janssen
|
37631ddc28
|
gnu: r-rhtslib: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.8.0.
|
2017-04-28 11:05:11 +02:00 |
|
Roel Janssen
|
8444f6067a
|
gnu: r-zlibbioc: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.22.0.
|
2017-04-28 11:05:10 +02:00 |
|
Roel Janssen
|
a7b90ea990
|
gnu: r-motifrg: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.20.0.
|
2017-04-28 11:05:09 +02:00 |
|
Roel Janssen
|
0fce7d9be5
|
gnu: r-seqlogo: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.42.0.
|
2017-04-28 11:05:08 +02:00 |
|
Roel Janssen
|
3ae82c8dfe
|
gnu: r-genomation: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.8.0.
|
2017-04-28 11:05:07 +02:00 |
|
Roel Janssen
|
08b9224d2d
|
gnu: r-seqpattern: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.8.0.
|
2017-04-28 11:05:06 +02:00 |
|
Roel Janssen
|
5999359f56
|
gnu: r-impute: Update to 1.50.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.50.0.
|
2017-04-28 11:05:06 +02:00 |
|
Roel Janssen
|
c54a702a28
|
gnu: r-bsgenome: Update to 1.44.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.44.0.
|
2017-04-28 11:05:04 +02:00 |
|
Roel Janssen
|
6e70b6d63c
|
gnu: r-topgo: Update to 2.28.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.28.0.
|
2017-04-28 11:05:03 +02:00 |
|
Roel Janssen
|
56373771b3
|
gnu: r-graph: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.54.0.
|
2017-04-28 11:05:02 +02:00 |
|
Roel Janssen
|
5d0301a339
|
gnu: r-genomicfeatures: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.0.
|
2017-04-28 11:05:01 +02:00 |
|
Roel Janssen
|
2ea7155b04
|
gnu: r-rtracklayer: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.0.
|
2017-04-28 11:05:00 +02:00 |
|
Roel Janssen
|
5f16d1e47d
|
gnu: r-genomicalignments: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.0.
|
2017-04-28 11:04:59 +02:00 |
|
Roel Janssen
|
d006ee31af
|
gnu: r-summarizedexperiment: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment):
[source]: Update to 1.6.0,
[propagated-inputs]: Add r-delayedarray.
|
2017-04-28 11:04:58 +02:00 |
|