a7a1cf2948
gnu: bash-static: Use 'modify-phases'.
...
* gnu/packages/bash.scm (static-bash)[arguments]: Use 'modify-phases'.
2016-10-01 00:00:02 +02:00
0c64d8564f
gnu: readline: Update to 7.0.
...
* gnu/packages/readline.scm (readline): Update to 7.0.
2016-10-01 00:00:02 +02:00
42d1e525bc
gnu: texinfo: Update to 6.3.
...
* gnu/packages/texinfo.scm (texinfo): Update to 6.3.
(texinfo-6.3): Remove.
2016-09-30 12:06:46 +02:00
79355ae3e8
Merge branch 'master' into core-updates
2016-09-30 12:05:27 +02:00
bddf22b99e
gnu: libreoffice: Update to 5.1.5.2.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.5.2.
2016-09-30 01:17:24 -04:00
cfb7e269e9
gnu: xonsh: Remove bundled PLY.
...
* gnu/packages/shells.scm (xonsh)[source]: Add snippet to remove bundled
python-ply.
[inputs]: Add python-ply.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-29 17:13:05 -04:00
86d8f6d3ef
services: Add 'openssh-service'.
...
* gnu/packages/ssh.scm (openssh)[arguments]: Set sysconfdir to /etc/ssh.
* gnu/services/ssh.scm (<openssh-configuration>): New record type.
(%openssh-accounts): New variable.
(openssh-activation, openssh-config-file, openssh-shepherd-service)
(openssh-service): New procedures.
(openssh-service-type): New variable.
* doc/guix.texi (Networking Services): Document 'openssh-services'.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 23:11:48 +02:00
01c5c21a67
gnu: emacs: Build with m17n support.
...
* gnu/packages/emacs.scm (emacs): Build with m17n support.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:33 +02:00
a80b60f484
gnu: Add m17n-lib.
...
* gnu/packages/emacs.scm (m17n-lib): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:33 +02:00
154c71e003
gnu: Add m17n-db.
...
* gnu/packages/emacs.scm (m17n-db): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-29 17:54:32 +02:00
0da1b7062a
gnu: c-ares: Update to 1.12.0 [fixes CVE-2016-5180].
...
* gnu/packages/adns.scm (c-ares): Update to 1.12.0.
[source]: Use HTTPS URL.
[home-page]: Use HTTPS URL.
2016-09-29 11:18:52 -04:00
b9f7895d39
Revert "gnu: %default-extra-linux-options: Remove redundant options."
...
Options aren't redundant and are required for building the initrd.
This reverts commit 50dbc03647
2016-09-29 12:59:37 +02:00
d06ce0466f
gnu: dbus-c++: License has "or later" clause.
...
* gnu/packages/glib.scm (dbus-c++)[license]: Change to LGPL2.1+.
2016-09-29 09:01:22 +02:00
39d6b9c99f
gnu: linux-pam@1.2: Remove erroneous 'name' field.
...
* gnu/packages/linux.scm (linux-pam-1.2)[name]: Remove.
2016-09-28 23:03:00 +02:00
411264c250
gnu: linux-pam: Allow compilation on GNU/Hurd.
...
* gnu/packages/patches/linux-pam-no-setfsuid.patch: New file.
* gnu/packages/linux.scm (linux-pam)[source]: Use it.
(linux-pam-1.2)[source]: Likewise.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 23:01:49 +02:00
789f09a073
gnu: binutils: Work around Bash 4.2 bug.
...
Fixes a 'binutils-cross-boot0' build failure on mips64el.
Reported at
<https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01083.html >.
* gnu/packages/patches/binutils-mips-bash-bug.patch: New file.
* gnu/packages/base.scm (binutils)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-28 22:44:38 +02:00
2320e76b82
gnu: sra-tools: Fix build on i686.
...
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass
"VDB_LIBDIR" in make-flags; dynamically link libmagic.
2016-09-28 22:30:41 +02:00
37042a0fb4
gnu: tilda: Update to 1.3.3.
...
* gnu/packages/terminals.scm (tilda): Update to 1.3.3.
2016-09-28 21:38:38 +03:00
1d51585573
gnu: Add xonsh.
...
* gnu/packages/shells.scm (xonsh): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-28 13:42:06 -04:00
b2fe918302
gnu: attic: Superseded by borg.
...
* gnu/packages/backup.scm (attic)[properties]: New field.
2016-09-28 13:07:06 -04:00
415ee287fa
gnu: nestopia-ue: Update to version 1.47.
2016-09-28 17:00:35 +02:00
dac65f90b6
gnu: higan: Update to version 101.
...
* gnu/packages/games.scm (higan): Update to version 101.
2016-09-28 17:00:12 +02:00
9e01589469
gnu: gettext: Install Emacs tools.
...
Fixes <http://bugs.gnu.org/24442 >.
Reported by Ivan Vilata i Balaguer <ivan@selidor.net>.
* gnu/packages/gettext.scm (gnu-gettext)[native-inputs]: Add 'emacs'.
[arguments]: Add 'add-emacs-autoloads' phase.
2016-09-28 17:54:50 +03:00
b94a6ca074
gnu: Add and use gettext-minimal.
...
* gnu/packages/gettext.scm (gnu-gettext): Rename to...
(gettext-minimal): ... this. Adjust synopsis and description.
(gnu-gettext): Inherit from it.
(po4a): Use 'gettext-minimal' instead of 'gnu-gettext'.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/apl.scm: Likewise.
* gnu/packages/attr.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/commencement.scm: Likewise.
* gnu/packages/crypto.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/education.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/enlightenment.scm: Likewise.
* gnu/packages/fcitx.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gkrellm.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/ibus.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/iso-codes.scm: Likewise.
* gnu/packages/kde-frameworks.scm: Likewise.
* gnu/packages/kodi.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/man.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mono.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/nano.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/sawfish.scm: Likewise.
* gnu/packages/statistics.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/webkit.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wine.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
2016-09-28 17:54:50 +03:00
b411517a19
gnu: git: Add input perl-term-readkey for 'git-svn'.
...
* gnu/packages/version-control.scm (git)[inputs]: Add perl-term-readkeys.
[arguments]: Add perl-term-readkeys to the PERL5LIB of `git-svn'.
Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-09-28 21:23:47 +08:00
7a0630035c
gnu: linux-libre-beagle-bone-black: Remove kernel variant.
...
linux-libre-beagle-bone-black is misslabeled. This kernel variant is
for the original beagle board.
* gnu/packages/linux.scm (linux-libre-beagle-bone-black): Remove.
2016-09-28 12:40:12 +02:00
e4e9c0a083
gnu: make-linux-libre: Install device tree files.
...
* gnu/packages/linux.scm (make-linux-libre): Install device tree files.
2016-09-28 12:40:12 +02:00
50dbc03647
gnu: %default-extra-linux-options: Remove redundant options.
...
* gnu/packages/linux.scm (%default-extra-linux-options): Remove
redundant options.
2016-09-28 12:40:12 +02:00
33619c3ae0
gnu: Add sdcc.
...
* gnu/packages/sdcc.scm (sdcc): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-09-28 12:40:12 +02:00
a3af70aca8
gnu: Add picocom.
...
* gnu/packages/terminals.scm (picocom): New variable.
2016-09-28 12:40:12 +02:00
615c999055
gnu: opendht: Propagate msgpack.
...
* gnu/packages/crypto.scm (opendht)[inputs]: Remove msgpack.
[propagated-inputs]: Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:45:02 +02:00
974aaf71e5
gnu: telephony: Add 'license:' prefix.
...
* gnu/packages/telephony.scm (commoncpp) [license]: Add prefix.
(ucommon) [license]: Add prefix.
(ccrtp) [license]: Add prefix.
(osip) [license]: Add prefix.
(exosip) [license]: Add prefix.
(sipwitch) [license]: Add prefix.
(libsrtp) [license]: Add prefix.
(libiax2) [license]: Add prefix.
(seren) [license]: Add prefix.
(pjproject-sfl) [license]: Add prefix.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:25:34 +02:00
9a4c032cc4
gnu: Add gsm.
...
* gnu/packages/audio.scm (gsm): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:14:42 +02:00
89eb7581a4
gnu: Add dbus-c++.
...
* gnu/packages/glib.scm (dbus-c++): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-28 11:08:33 +02:00
a7c9b062ad
gnu: libressl: Update to 2.5.0.
...
* gnu/packages/tls.scm (libressl): Update to 2.5.0.
2016-09-27 20:40:39 -04:00
ffabdc185c
gnu: encfs: Update to 1.9.1.
...
* gnu/packages/crypto.scm (encfs): Update to 1.9.1.
2016-09-28 00:20:30 +02:00
9da3c49837
gnu: btrfs-progs: Update to 4.7.3.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.7.3.
2016-09-28 00:20:30 +02:00
8c120e4f3b
gnu: zip: Use 'modify-phases'.
...
* gnu/packages/zip.scm (zip)[arguments]: Use 'modify-phases'.
2016-09-28 00:20:30 +02:00
8be2428e85
gnu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes CVE-2016-2776].
...
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to 9.9.9-P3.
2016-09-27 15:19:14 -04:00
cc132e0f38
gnu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776].
...
* gnu/packages/dns.scm (bind): Update to 9.10.4-P3.
2016-09-27 15:19:14 -04:00
e8c9b01090
gnu: Add python-q.
...
* gnu/packages/python.scm (python-q, python2-q): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 14:54:58 -04:00
b9bc6e8420
gnu: expat: Fix regression caused by fix for CVE-2016-0718.
...
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
* gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:49:49 -04:00
32f70e1f86
gnu: Add gctp.
...
* gnu/packages/maths.scm (gctp): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:37:46 -04:00
3973e137f0
gnu: Add gloox.
...
* gnu/packages/messaging.scm (gloox): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:31:18 -04:00
419fb3f1ac
gnu: femtolisp: Don't build on mips64el or armhf.
...
* gnu/packages/lisp.scm (femtolisp)[supported-systems]: New field,
remove support for mips64el and armhf.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 12:29:35 -04:00
e9070933bf
gnu: Add gobby.
...
* gnu/packages/gobby.scm (gobby): New variable.
2016-09-27 14:46:10 +02:00
22a3cff3c8
gnu: Add obby.
...
* gnu/packages/gobby.scm (obby): New variable.
2016-09-27 14:46:10 +02:00
c8105e811b
gnu: Add libnet6.
...
* gnu/packages/gobby.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
2016-09-27 14:46:10 +02:00
b61d962723
gnu: Add libxml++-2.
...
* gnu/packages/gnome.scm (libxml++-2): New variable.
2016-09-27 14:46:10 +02:00
66329c23a1
gnu: New default Dovecot service postmaster_address
...
* gnu/services/mail.scm (dovecot-configuration): Change default for
postmaster-address, as dovecot is now requiring a non-empty value and
will fail to start up otherwise.
* doc/guix.texi (Mail Services): Update.
2016-09-27 14:45:07 +02:00
a777535cd7
gnu: aria2: Update to 1.27.1.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.27.1.
2016-09-27 14:52:48 +03:00
99caa6f75f
gnu: python-plastid: Update to 1.4.6.
...
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to
1.4.6.
[propagated-inputs]: Add python-termcolor.
2016-09-27 20:07:12 +10:00
67f66812f5
gnu: Add python-termcolor.
...
* gnu/packages/python.scm (python-termcolor, python2-termcolor): New
variables.
2016-09-27 20:07:02 +10:00
f536dce522
gnu: python-pysam: Enable tests.
...
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from
PyPi to source archive due to missing test data.
[arguments]: Add check phase after install.
[native-inputs]: Add python-nose, samtools and bcftools.
2016-09-27 20:06:00 +10:00
dff26b2363
gnu: python-pysam: Delete bundled htslib.
...
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet
to delete htslib.
[arguments]: Add htslib flags in 'set-flags phase.
[propagated-inputs]: New field. Add htslib.
2016-09-27 20:06:00 +10:00
397d463a12
gnu: python-pysam: Use 'modify-phases'.
...
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use
'modify-phases'.
2016-09-27 20:06:00 +10:00
bdc7be59eb
gnu: Add bcftools.
...
* gnu/packages/bioinformatics.scm (bcftools): New variable.
2016-09-27 20:06:00 +10:00
e301bfc886
gnu: python2-pbcore: Update to 1.2.10.
...
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
2016-09-27 20:06:00 +10:00
c2efe1aea8
gnu: Add python-pyxb.
...
* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
2016-09-27 20:06:00 +10:00
fd49eb213f
gnu: python-pysam: Update to 0.9.1.4.
...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
2016-09-27 20:05:57 +10:00
3c185b24f5
Add missing exports.
...
Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html >.
* gnu/system/file-systems.scm (%tty-gid): Export.
* guix/build-system/python.scm (default-python, default-python2):
Export.
2016-09-27 11:22:56 +02:00
9ad0965228
gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].
...
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
2016-09-26 17:09:08 -04:00
8be42e5daf
gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052].
...
* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
2016-09-26 17:09:05 -04:00
58478cc1cb
gnu: libftdi: Propagate the libusb input.
...
* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-26 14:30:37 -04:00
675d7ae26f
gnu: ncbi-vdb: Only build on i686 and x86_64.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
2016-09-26 14:30:59 +02:00
bc600b80a2
gnu: ghc-pandoc: Update to 1.17.2.
...
* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
2016-09-26 14:30:59 +02:00
5a502d9abd
gnu: ghc-texmath: Update to 0.8.6.5.
...
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5.
2016-09-26 14:30:58 +02:00
2e9b1276b7
gnu: ghc-cmark: Update to 0.5.3.1.
...
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1.
2016-09-26 14:30:58 +02:00
8f1e2dca55
gnu: ghc-highlighting-kate: Update to 0.6.3.
...
* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3.
2016-09-26 14:30:58 +02:00
ae87e4fcde
gnu: ghc-pandoc-types: Update to 1.16.1.1.
...
* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1.
2016-09-26 14:30:58 +02:00
1da48e4302
gnu: ghc-tagsoup: Update to 0.14.
...
* gnu/packages/haskell.scm (ghc-tagsoup): Update to 0.14.
2016-09-26 14:30:58 +02:00
1a545a1e7c
gnu: tbb: Fail on test errors.
...
* gnu/packages/tbb.scm (tbb)[arguments]: Add phase
"fail-on-test-errors".
2016-09-26 14:30:58 +02:00
ba4529c4f7
gnu: ghc-tls: Update to 1.3.8.
...
* gnu/packages/haskell.scm (ghc-tls): Update to 1.3.8.
2016-09-26 14:30:57 +02:00
7f5ca399bf
gnu: tbb: Use modify-phases syntax.
...
* gnu/packages/tbb.scm (tbb)[arguments]: Use "modify-phases" syntax.
2016-09-26 14:30:57 +02:00
af8de20386
gnu: vsearch: Update to 2.1.1.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1.
2016-09-26 20:35:32 +10:00
204adc3017
gnu: azr3: Fix libsigc++ build errors.
...
* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag.
[source]: Add patch.
* gnu/packages/patches/azr3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-26 10:47:58 +02:00
3ef08dceb3
gnu: qtractor: Update to 0.7.9.
...
* gnu/packages/music.scm (qtractor): Update to 0.7.9.
2016-09-26 08:16:13 +02:00
f3cfe4515a
gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.
...
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
New variable.
2016-09-26 07:47:55 +02:00
684f29bd2e
gnu: Add r-grohmm.
...
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
2016-09-26 07:47:55 +02:00
7f903d7300
gnu: Add r-systempiper.
...
* gnu/packages/bioinformatics.scm (r-systempiper): New variable.
2016-09-26 07:47:55 +02:00
cb99d457f0
gnu: Add r-shortread.
...
* gnu/packages/bioinformatics.scm (r-shortread): New variable.
2016-09-26 07:47:54 +02:00
89f40c5e4e
gnu: Add r-gostats.
...
* gnu/packages/bioinformatics.scm (r-gostats): New variable.
2016-09-26 07:47:54 +02:00
1a1931f7e0
gnu: Add r-category.
...
* gnu/packages/bioinformatics.scm (r-category): New variable.
2016-09-26 07:47:54 +02:00
ad740ff818
gnu: Add r-gseabase.
...
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
2016-09-26 07:47:53 +02:00
cd9e7dc7ff
gnu: Add r-rbgl.
...
* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
2016-09-26 03:25:23 +02:00
e816377374
gnu: Add r-annotationforge.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
2016-09-26 03:25:17 +02:00
9e330278ee
gnu: Add r-batchjobs.
...
* gnu/packages/statistics.scm (r-batchjobs): New variable.
2016-09-26 03:25:11 +02:00
dc4fb16d25
gnu: Add r-fail.
...
* gnu/packages/statistics.scm (r-fail): New variable.
2016-09-26 03:25:06 +02:00
cd26ec3bbf
gnu: Add r-bbmisc.
...
* gnu/packages/statistics.scm (r-bbmisc): New variable.
2016-09-26 03:25:02 +02:00
929d4aaea1
gnu: Add r-checkmate.
...
* gnu/packages/statistics.scm (r-checkmate): New variable.
2016-09-26 03:24:59 +02:00
0d90462fa3
gnu: Add r-backports.
...
* gnu/packages/statistics.scm (r-backports): New variable.
2016-09-26 03:24:55 +02:00
8e1bfc7e8c
gnu: Add r-sendmailr.
...
* gnu/packages/statistics.scm (r-sendmailr): New variable.
2016-09-26 03:24:50 +02:00
0c77fd50f8
gnu: Add r-pheatmap.
...
* gnu/packages/statistics.scm (r-pheatmap): New variable.
2016-09-26 03:24:44 +02:00
092197a548
gnu: Add r-matrix.
...
* gnu/packages/statistics.scm (r-matrix): New variable.
2016-09-26 03:21:32 +02:00
ad34f0ac96
gnu: Add r-deseq2.
...
* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
2016-09-26 03:21:27 +02:00
2301fd3e4d
gnu: Add r-genefilter.
...
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
2016-09-26 03:21:19 +02:00
2d21d44dbd
gnu: Add r-hmisc.
...
* gnu/packages/statistics.scm (r-hmisc): New variable.
2016-09-26 03:21:13 +02:00
07a664cde0
gnu: Add r-geneplotter.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
2016-09-26 03:21:07 +02:00
8c6de58849
gnu: Add r-annotate.
...
* gnu/packages/bioinformatics.scm (r-annotate): New variable.
2016-09-26 03:20:59 +02:00
2213730c5b
gnu: Add r-rpart.
...
* gnu/packages/statistics.scm (r-rpart): New variable.
2016-09-26 03:20:52 +02:00
356c6d61a6
gnu: Add r-rjson.
...
* gnu/packages/web.scm (r-rjson): New variable.
2016-09-26 03:20:44 +02:00
bbed0ab6b4
gnu: Add r-hwriter.
...
* gnu/packages/web.scm (r-hwriter): New variable.
2016-09-26 03:20:19 +02:00
57a31efb4b
gnu: tcc: Disable build on MIPS.
...
* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on
mips64el.
2016-09-26 03:01:06 +02:00
9311722703
gnu: Add optipng.
...
* gnu/packages/image.scm (optipng): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-09-25 16:53:00 -04:00
217f3fdfe6
gnu: openldap: Use gnutls.
...
* gnu/packages/openldap.scm (openldap)[inputs]: Switch to gnutls.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-25 22:25:02 +03:00
5babe521c8
system: Don't emit a GRUB 'search' command when passed a GRUB file name.
...
Reported by Tomáš Čech <tcech@suse.com>
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20067#26 >.
* gnu/system/grub.scm (grub-root-search): Don't emit anything when FILE
is a string that does not denote an absolute file name.
2016-09-26 00:18:39 +09:00
7acd71d13d
gnu: epiphany: Drop NSS and libwnck.
...
These dependencies were dropped in Epiphany 3.21.x.
* gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck".
2016-09-25 13:04:00 +02:00
9f58932ecc
gnu: epiphany: Update to 3.22.0.
...
* gnu/packages/gnome.scm (epiphany): Update to 3.22.0.
2016-09-25 13:04:00 +02:00
58d04dbaf0
gnu: python-virtualenv: Update to 15.0.3.
...
* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3.
[arguments]: Disable failing test.
2016-09-25 13:04:00 +02:00
1535c0a6b6
gnu: linux-libre: Update to 4.7.5.
...
* gnu/packages/linux.scm (linux-libre): Update to 4.7.5.
2016-09-25 03:57:57 -04:00
dfcce0cc8d
gnu: linux-libre@4.4: Update to 4.4.22.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22.
2016-09-25 03:55:37 -04:00
94c5dc8c03
gnu: Add pam-krb5
...
* gnu/packages/admin.scm (pam-krb5): New variable.
2016-09-25 06:40:29 +02:00
9f2989b6cc
gnu: perl: Split configure phase.
...
* gnu/packages/perl.scm (perl)[arguments]: Split 'configure' phase into
'setup-configure' and 'configure' phases.
2016-09-25 10:09:00 +10:00
a8f3d49280
gnu: privoxy: Update to 3.0.26.
...
* gnu/packages/tor.scm (privoxy): Update to 3.0.26.
[home-page]: Use https.
2016-09-24 23:09:14 +03:00
0ab57b0d04
gnu: tor: Update to 0.2.8.8.
...
* gnu/packages/tor.scm (tor): Update to 0.2.8.8.
[source]: Update source url.
[home-page]: Use https.
2016-09-24 22:27:16 +03:00
0f65f54ebd
system: grub.cfg uses correct file names when store is not in root partition.
...
Fixes <http://bugs.gnu.org/24346 >.
Reported by csanchezdll@gmail.com (Carlos Sánchez de La Lama).
* guix/scripts/system.scm (previous-grub-entries): Get the initrd file
name from PARAMS.
* gnu/system.scm (operating-system-grub.cfg): Use
'operating-system-initrd-file' to retrieve the initrd file name.
* gnu/system/grub.scm (strip-mount-point): New procedure.
(grub-configuration-file)[entry->gexp]: Call 'strip-mount-point' for
LINUX and INITRD.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-09-24 17:48:13 +09:00
d7b342d815
system: 'read-boot-parameters' reads the 'initrd' parameter.
...
* gnu/system.scm (<boot-parameters>)[initrd]: New field.
(read-boot-parameters): Read the 'initrd' element and fill in the
'initrd' field of the result.
2016-09-24 17:48:12 +09:00
b5b5105c3d
gnu: xorg-server: Set default font path to empty.
...
* gnu/packages/xorg.scm (xorg-server)[arguments]: Pass
"--with-default-font-path=" to #:configure-flags.
2016-09-24 14:28:09 +08:00
6fc48c2ee2
gnu: Add gforth.
...
* gnu/packages/gforth.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Co-authored-by: 宋文武 <iyzsong@gmail.com>
2016-09-24 14:07:12 +08:00
54021cd8c6
gnu: Add gnome-calculator.
...
* gnu/packages/gnome.scm (gnome-calculator): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-09-24 00:51:52 -04:00
8058880017
gnu: Add cmark.
...
* gnu/packages/markdown.scm (cmark): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 20:56:51 -04:00
93666cf783
gnu: Add enet.
...
* gnu/packages/networking.scm (enet): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 19:18:10 -04:00
03ddad84ba
gnu: flashrom: Update to 0.9.9
...
* gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9.
[source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch".
[aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags.
* gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 19:03:19 -04:00
0f5de84e98
gnu: Add nickle.
...
* gnu/packages/nickle.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 18:54:24 -04:00
047cd01d11
gnu: orpheus: Use 'modify-phases'.
...
* gnu/packages/orpheus.scm (orpheus)[arguments]: Use the 'modify-phases'
syntax.
2016-09-23 17:38:25 +03:00
5bd6270211
gnu: orpheus: Fix build on mips64el.
...
* gnu/packages/orpheus.scm (orpheus)[arguments]: On mips64el, pass
"--host=mips64el-unknown-linux-gnu" to ./configure.
2016-09-23 17:38:24 +03:00
236d522b80
gnu: giac-xcas: Update to 1.2.2-81.
...
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-81.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 09:57:20 -04:00
8f309571d3
gnu: r-curl: Respect CURL_CA_BUNDLE variable.
...
* gnu/packages/web.scm (r-curl)[arguments]: Add phase
"allow-CURL_CA_BUNDLE".
2016-09-23 13:13:41 +02:00
646a84338d
gnu: sra-tools: Update to 2.7.0.
...
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.7.0.
2016-09-23 11:46:53 +02:00
40974c933e
gnu: ncbi-vdb: Update to 2.7.0.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.7.0.
2016-09-23 11:46:26 +02:00
48b419ebd6
gnu: ngs-sdk: Update to 1.2.5.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.5.
2016-09-23 11:45:24 +02:00
4781820147
gnu: randomjungle: Only build on x86_64 and i686.
...
* gnu/packages/machine-learning.scm (randomjungle)[supported-systems]:
Only build on x86_64 and i686.
2016-09-23 08:23:51 +02:00
fc3b2cbb04
gnu: retroarch: Update to 1.3.6.
...
* gnu/packages/games.scm (retroarch): Update to 1.3.6.
2016-09-23 09:02:03 +03:00
5989d4eaac
gnu: synfig: Fix isnan error.
...
* gnu/packages/animation.scm (synfig)[arguments]: Add build phase to
replace "::isnan" with "std::isnan".
2016-09-23 07:45:16 +02:00
56f33f3fd5
gnu: ccache: Upgrade to 3.3.1.
...
* gnu/packages/ccache.scm (ccache): Upgrade to 3.3.1.
[description]: Adjust supported languages.
2016-09-22 23:56:17 -05:00
bd368c7174
gnu: ccache: Use modify-phases.
...
* gnu/packages/ccache.scm (ccache)[arguments]: Use modify-phases.
2016-09-22 23:43:20 -05:00
1a0ae573c7
gnu: boost: Add -j for build.
...
* gnu/packages/boost.scm (boost)[arguments]: Add -j flag for build
phase.
2016-09-22 22:34:04 -05:00
6941965526
gnu: boost: Upgrade to 1.61.0.
...
* gnu/packages/boost.scm (boost): Upgrade to 1.61.0
* gnu/packages/databases.scm (mysql)[arguments]: Compute boost minor
version for substitution.
2016-09-22 22:33:37 -05:00
71b611bc34
gnu: Add ghc-transformers-0.4.2.0.
...
* gnu/packages/haskell.scm (ghc-transformers-0.4.2.0): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:01 -04:00
10a03d6665
gnu: Add ghc-system-fileio.
...
* gnu/packages/haskell.scm (ghc-system-fileio): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
23feb6e4fb
gnu: Add ghc-system-filepath.
...
* gnu/packages/haskell.scm (ghc-system-filepath): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
58c85b1f82
gnu: Add ghc-options.
...
* gnu/packages/haskell.scm (ghc-options): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
c92d944c1e
gnu: Add ghc-chell-quickcheck.
...
* gnu/packages/haskell.scm (ghc-chell-quickcheck): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
475d366866
gnu: Add ghc-chell-quickcheck-bootstrap.
...
* gnu/packages/haskell.scm (ghc-chell-quickcheck-bootstrap): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
8ea94489fd
gnu: Add ghc-chell.
...
* gnu/packages/haskell.scm (ghc-chell): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
7e06c4aa98
gnu: Add ghc-options-bootstrap.
...
* gnu/packages/haskell.scm (ghc-options-bootstrap): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
25b3bdb5ff
gnu: Add ghc-shelly.
...
* gnu/packages/haskell.scm (ghc-shelly): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
3f7aa1029b
gnu: Add ghc-system-fileio-bootstrap.
...
* gnu/packages/haskell.scm (ghc-system-fileio-bootstrap): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ddd5955b1e
gnu: Add ghc-system-filepath-bootstrap.
...
* gnu/packages/haskell.scm (ghc-system-filepath-bootstrap): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
2b41f4afc1
gnu: Add ghc-lifted-async.
...
* gnu/packages/haskell.scm (ghc-lifted-async): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
Ludovic Courtès
Leo Famulari
Danny Milosavljevic
Julien Lepiller
Arun Isaac
David Craven
Rene Saavedra
Ricardo Wurmus
Efraim Flashner
Stefan Reichoer
Taylan Ulrich Bayırlı/Kammer
Alex Kost
Thomas Danckaert
Lukas Gradl
Tobias Geerinckx-Rice
ng0
ng0
Andy Wingo
Ben J Woodcroft
Marius Bakke
Ricardo Wurmus
Alex Vong
Mark H Weaver
John Darrington
Carlos Sánchez de La Lama
宋文武
Erik Edrosa
Nicolas Goaziou
Eric Bavier