cee17521ec
gnu: python-pymc: Update to 5.7.2.
...
* gnu/packages/statistics.scm (python-pymc): Update to 5.7.2.
2023-09-02 11:17:03 -03:00
99ed03843c
gnu: r-clubsandwich: Update to 0.5.10.
...
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.10.
2023-08-28 17:08:55 +02:00
00cb411a0c
gnu: r-deoptimr: Update to 1.1-1.
...
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-1.
2023-08-28 17:08:55 +02:00
8016c913b3
gnu: r-sfsmisc: Update to 1.1-16.
...
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-16.
2023-08-28 17:08:55 +02:00
47757d9f2b
gnu: r-biased-urn: Update to 2.0.11.
...
* gnu/packages/statistics.scm (r-biased-urn): Update to 2.0.11.
2023-08-28 17:08:55 +02:00
6ba6b8da32
gnu: r-purrr: Update to 1.0.2.
...
* gnu/packages/statistics.scm (r-purrr): Update to 1.0.2.
2023-08-28 17:08:55 +02:00
9692aa657b
gnu: r-viridis: Update to 0.6.4.
...
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.4.
2023-08-28 17:08:55 +02:00
53fd472591
gnu: r-mvtnorm: Update to 1.2-3.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-3.
2023-08-28 17:08:55 +02:00
130eae02a6
gnu: r-glmnet: Update to 4.1-8.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-8.
2023-08-28 17:08:55 +02:00
1bed7fc281
gnu: r-rmarkdown: Update to 2.24.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.24.
[native-inputs]: Add esbuild.
2023-08-28 17:08:55 +02:00
e04fd37d35
gnu: r-rcpparmadillo: Update to 0.12.6.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.6.1.0.
2023-08-28 17:08:55 +02:00
00d19699e2
gnu: r-multitaper: Update to 1.0-17.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-17.
2023-08-28 17:08:55 +02:00
37ac27ce5d
gnu: r-markdown: Update to 1.8.
...
* gnu/packages/statistics.scm (r-markdown): Update to 1.8.
2023-08-28 17:08:55 +02:00
68f2b8c176
gnu: r-nlme: Update to 3.1-163.
...
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-163.
2023-08-28 17:08:55 +02:00
a21ad0d56e
gnu: r-matrix: Update to 1.6-1.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-1.
2023-08-28 17:08:55 +02:00
47629756b6
gnu: r-httr: Update to 1.4.7.
...
* gnu/packages/statistics.scm (r-httr): Update to 1.4.7.
2023-08-28 14:22:44 +02:00
e67dce9934
gnu: r-gtable: Update to 0.3.4.
...
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.4.
2023-08-28 14:22:44 +02:00
5092c98c12
gnu: r-cairo: Add optional libraries.
...
* gnu/packages/statistics.scm (r-cairo)[inputs]: Remove libxt; add harfbuzz,
icu4c, libjpeg-turbo, and libtiff.
2023-08-28 14:22:44 +02:00
11038f9509
gnu: r-cairo: Update to 1.6-1.
...
* gnu/packages/statistics.scm (r-cairo): Update to 1.6-1.
2023-08-28 14:22:44 +02:00
edddda11cd
gnu: r-quantreg: Update to 5.97.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.97.
[arguments]: Quote phases instead of argument list.
2023-08-28 14:22:44 +02:00
84e63470de
gnu: r-acepack: Update to 1.4.2.
...
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.2.
[properties]: Protect gfortran input from updater.
2023-08-28 14:22:44 +02:00
4aeee4b57d
gnu: r-spatial: Update to 7.3-17.
...
* gnu/packages/statistics.scm (r-spatial): Update to 7.3-17.
2023-08-28 14:22:44 +02:00
091bf43b7f
gnu: r-survival: Update to 3.5-7.
...
* gnu/packages/statistics.scm (r-survival): Update to 3.5-7.
2023-08-28 14:22:44 +02:00
05044a5446
gnu: r-ggplot2: Update to 3.4.3.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.3.
2023-08-28 14:22:43 +02:00
c4b9f726e3
gnu: python-pymc: Update to 5.7.1.
...
* gnu/packages/statistics.scm (python-pymc): Update to 5.7.1.
2023-08-05 18:40:01 -03:00
02a36d939a
gnu: python-pymc: Update to 5.6.1.
...
* gnu/packages/statistics.scm (python-pymc): Update to 5.6.1.
2023-07-29 14:25:03 -03:00
26e24d8018
gnu: python-arviz: Update to 0.16.1.
...
* gnu/packages/statistics.scm (python-arviz): Update to 0.16.1.
2023-07-29 14:25:03 -03:00
7a18bd9e74
gnu: Rationalize texlive-updmap.cfg and texlive-tiny inputs.
...
TEXLIVE-UPDMAP.CFG and TEXLIVE-TINY should only be used as native inputs.
Also remove texlive packages already provided by them.
* doc/build.scm (pdf-manual):
* gnu/packages/algebra.scm (pari-gp):
* gnu/packages/bioinformatics.scm (discrover):
(phyml):
(velvet):
* gnu/packages/chemistry.scm (yaehmop):
* gnu/packages/chez.scm (stex-bootstrap):
(chez-web):
(chez-sockets):
* gnu/packages/cran.scm (r-prereg):
* gnu/packages/docbook.scm (dblatex):
* gnu/packages/emacs-xyz.scm (emacs-auctex):
* gnu/packages/engineering.scm (fastcap):
* gnu/packages/fsf.scm (book-faif):
* gnu/packages/graphviz.scm (dot2tex):
* gnu/packages/maths.scm (hypre):
* gnu/packages/ocaml.scm (unison):
(ocaml-bibtex2html):
* gnu/packages/plotutils.scm (asymptote):
* gnu/packages/python-xyz.scm (python-nbconvert):
(python-pypandoc):
* gnu/packages/radio.scm (gnuradio):
(libosmo-dsp):
* gnu/packages/statistics.scm (r-with-tests):
* gnu/packages/tex.scm (texlive-makecmds):
(texlive-innerscript):
(teximpatient):
(texlive-xkeyval): Remove texlive packages already provided by
TEXLIVE-UPDMAP.CFG. Don't add TEXLIVE-TINY or TEXLIVE-UPDMAP.CFG as inputs.
2023-07-18 18:16:47 +02:00
520551a596
gnu: Replace texlive-latex-base with texlive-latex-bin.
...
Although `latex-base' is clearly defined on CTAN, it isn't a proper TeX Live
package. Since we're trying to follow as closely as possible this TeX
distribution, we replace the package with the closest one, which is
`texlive-latex-bin'. As a consequence, the #:TEXLIVE-LATEX-BASE argument
becomes #:TEXLIVE-LATEX-BIN?, emphasizing the fact that the meaningful values
for it are booleans.
* gnu/packages/graphviz.scm (dot2tex)[propagated-inputs]: Remove
TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN.
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Remove
TEXLIVE-LATEX-BASE, TEXLIVE-GRAPHICS, TEXLIVE-L3BACKEND. Use
TEXLIVE-UPDMAP.CFG.
* gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Remove
TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN.
* gnu/packages/tex.scm (texlive-latex-base): Deprecate variable.
(texlive-hyphen-complete):
(texlive-tex):
(texlive-latex):
(texlive-docstrip):
(texlive-unicode-data):
(texlive-hyphen-base):
(texlive-tex-ini-files):
(texlive-metafont):
(texlive-modes):
(texlive-knuth-lib):
(texlive-latex-fonts):
(texlive-etex):
(texlive-plain):
(texlive-kpathsea):
(texlive-latexconfig):
(texlive-latex-bin):
(texlive-l3kernel):
(texlive-l3backend):
(texlive-l3packages):
(texlive-luatex):
(texlive-luahbtex):
(texlive-babel):
(texlive-cyrillic):
(texlive-pdftex):
(texlive-cm)[arguments]: Replace #:TEXLIVE-LATEX-BASE with #:TEXLIVE-LATEX-BIN?.
(texlive-lm):
(texlive-lua-alt-getopt):
(texlive-luaotfload):
(texlive-graphics-def):
(texlive-graphics-cfg): Set #:TEXLIVE-LATEX-BIN? to #F.
(texlive-graphics):
(texlive-lualibs):
(texlive-firstaid):
(texlive-atveryend)[arguments]: Set #:TEXLIVE-LATEX-BIN? to #F.
[native-inputs]: Add TEXLIVE-DOCSTRIP, TEXLIVE-PDFTEX.
(texlive-updmap.cfg): Remove TEXLIVE-CM, TEXLIVE-GRAPHICS,
TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN.
(texlive-atbegshi)[arguments]: Set #:TEXLIVE-LATEX-BIN? to #F.
[native-inputs]: Add TEXLIVE-DOCSTRIP, TEXLIVE-PDFTEX.
[propagated-inputs]: Remove TEXLIVE-IFTEX, TEXLIVE-INFWARERR and
TEXLIVE-LTXCMDS.
(texlive-everyshi)[arguments]: Build package with a temporary "latex.fmt"
file.
(texlive-cyrillic): Set #:TEXLIVE-LATEX-BIN? to #T.
* guix/build-system/texlive.scm (default-texlive-latex-base): Rename to
TEXLIVE-LATEX-BIN.
(lower): Set default value for TEXLIVE-LATEX-BIN? to #TRUE.
* gnu/packages/statistics.scm (r-with-tests): Remove TEXLIVE-LATEX-BASE and
TEXLIVE-GRAPHICS.
* doc/guix.texi (Build Systems): Document #:TEXLIVE-LATEX-BIN? argument.
Remove reference to #:TEXLIVE-LATEX-BASE.
2023-07-18 18:15:03 +02:00
36d7acf003
gnu: Deprecate texlive-base in favor of texlive-scheme-basic.
...
* gnu/packages/tex.scm (texlive-base): Deprecate variable.
(texlive-updmap.cfg): Use default packages from now deprecated TEXLIVE-BASE.
Also remove already implemented TODO.
* doc/build.scm (pdf-manual):
* gnu/packages/statistics.scm: Replace TEXLIVE-BASE with call to
TEXLIVE-UPDMAP.CFG.
* guix/profiles.scm (texlive-font-maps): Trigger TeX Live hook whenever
a texlive package is included in the manifest.
2023-07-18 18:15:02 +02:00
eab3b80369
gnu: texlive-jknappen: Deprecate package.
...
* gnu/packages/tex.scm (texlive-jknappen): Deprecate variable.
(texlive-paralist):
(texlive-jadetex):
(texlive-xindy):
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-nbconvert): Use TEXLIVE-JKNAPLTX instead.
2023-07-18 18:11:41 +02:00
402f256f81
gnu: texlive-latex-xkeyval -> texlive-xkeyval.
...
* gnu/packages/tex.scm (texlive-xkeyval): New variable.
(texlive-latex-xkeyval): Deprecate variable.
(texlive-bidi):
(texlive-pstool):
(texlive-polyglossia):
(texlive-zref):
(texlive-standalone):
(texlive-todonotes):
(texlive-adjustbox):
(texlive-qrcode):
(texlive-breakurl):
* gnu/packages/graphviz.scm (dot2tex):
* gnu/packages/statistics.scm (r-with-tests): Use new name.
2023-07-18 18:10:48 +02:00
76819a9655
gnu: texlive-fonts-ec -> texlive-ec.
...
* gnu/packages/tex.scm (texlive-ec): New variable.
(texlive-fonts-ec): Deprecate variable.
(lyx):
(biber):
* gnu/packages/python-xyz.scm (python-pypandoc):
* gnu/packages/statistics.scm (r-with-tests):
* doc/build.scm (pdf-manual):
* gnu/packages/bioinformatics.scm (discrover):
(phyml):
(velvet):
* gnu/packages/chemistry.scm (yaehmop):
* gnu/packages/chez.scm (stex-bootstrap):
* gnu/packages/ocaml.scm (unison):
(ocaml-bibtex2html):
* gnu/packages/plotutils.scm (asymptote): Use new name.
2023-07-18 18:10:48 +02:00
9550a20361
gnu: texlive-latex-upquote -> texlive-upquote.
...
* gnu/packages/tex.scm (texlive-upquote): New variable.
(texlive-latex-upquote): Deprecate variable.
* gnu/packages/cran.scm (r-prereg):
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/sphinx.scm (python-sphinx):
* gnu/packages/statistics.scm (r-with-tests): Use new name.
2023-07-18 18:10:46 +02:00
ed58e991f5
gnu: r-puniform: Update to 0.2.6.
...
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.6.
2023-07-17 14:19:54 +02:00
a450a5aafa
gnu: r-clubsandwich: Update to 0.5.9.
...
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.9.
2023-07-17 14:19:54 +02:00
7d6bdd1c8a
gnu: r-matrixmodels: Update to 0.5-2.
...
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-2.
2023-07-17 14:19:54 +02:00
b5fede2809
gnu: r-deoptimr: Update to 1.1-0.
...
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-0.
2023-07-17 14:19:54 +02:00
f96c109be9
gnu: r-mgcv: Update to 1.9-0.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.9-0.
2023-07-17 14:19:53 +02:00
af6b542954
gnu: r-openssl: Update to 2.1.0.
...
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.0.
[properties]: Add hint to keep openssl input.
[inputs]: Add zlib.
2023-07-17 14:18:43 +02:00
8d2a016f1b
gnu: r-with-tests: Update to 4.3.1.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.1.
2023-07-16 10:48:00 +02:00
ff0d34a29b
gnu: r-with-tests: Fix reference to grep.
...
detectCores.R fails to return the number of cores when running R in a
container without grep.
Reported-by: Jonas Freimuth.
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Fix references to
grep and wc in detectCores.R.
[inputs]: Add grep.
2023-07-16 10:48:00 +02:00
ee50cae529
gnu: r-norm: Update to 1.0-11.1.
...
* gnu/packages/statistics.scm (r-norm): Update to 1.0-11.1.
2023-07-12 14:29:09 +02:00
c141725c65
gnu: r-logspline: Update to 2.1.20.
...
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.20.
2023-07-12 14:29:09 +02:00
5a1c16fa18
gnu: r-pbapply: Update to 1.7-2.
...
* gnu/packages/statistics.scm (r-pbapply): Update to 1.7-2.
2023-07-12 14:29:09 +02:00
42c29d9d22
gnu: r-robust: Update to 0.7-2.
...
* gnu/packages/statistics.scm (r-robust): Update to 0.7-2.
2023-07-12 14:29:09 +02:00
2108aa1975
gnu: r-rrcov: Update to 1.7-4.
...
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-4.
2023-07-12 14:29:09 +02:00
387c1fafce
gnu: r-robustbase: Update to 0.99-0.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-0.
2023-07-12 14:29:08 +02:00
86c7032abf
gnu: r-deoptimr: Update to 1.0-14.
...
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.0-14.
2023-07-12 14:29:08 +02:00
f9dc378cb4
gnu: r-mvtnorm: Update to 1.2-2.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-2.
2023-07-12 14:29:08 +02:00
Vinicius Monego
Ricardo Wurmus
Nicolas Goaziou